EWM26791.1, cds3858 (CDS) Nannochloropsis gaditana

Overview
NameEWM26791.1
Unique Namecds3858
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:277040..277540 -
Alignment locationCM002462.1:276510..276773 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26791.1
Productyip1 domain-containing protein
Orig transcript idgnl|cribi|Naga_100018g39.2771.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:277040..277540 -
CM002462.1supercontigCM002462.1:276510..276773 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR006977Yip1
Homology
BLAST of EWM26791.1 vs. NCBI_GenBank
Match: gi|553185644|ref|XP_005854283.1| (yip1 domain-containing protein [Nannochloropsis gaditana CCMP526] >gi|422294774|gb|EKU22074.1| yip1 domain-containing protein [Nannochloropsis gaditana CCMP526] >gi|585108882|gb|EWM26791.1| yip1 domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 509.99 bits (1312), Expect = 0.000e+0
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 0
Query:    1 MASYGHHQPQQWYAGGPSSFDTRAGAMAGAPGGSYPAPGMSGAGTVPGSNYLAQGVSGGSTMVNGGGGQWGGSMDSGGGEEDYSMEPPLLVELGINFQHIWEKTKTVLMPLGSMDEHIMDDADLAGPLFFLLSFGIFLLMTGKVHFGYIYGFGVSGCIAMYLVLNLLSPKDIDVWRVCSILGYGLLPVIGLAFLGIAVSLKGGVGQGLATLTIAWSTYASTRLFEKALNMSQQRYLVAYPVALVYAIFVLITVF 254
            MASYGHHQPQQWYAGGPSSFDTRAGAMAGAPGGSYPAPGMSGAGTVPGSNYLAQGVSGGSTMVNGGGGQWGGSMDSGGGEEDYSMEPPLLVELGINFQHIWEKTKTVLMPLGSMDEHIMDDADLAGPLFFLLSFGIFLLMTGKVHFGYIYGFGVSGCIAMYLVLNLLSPKDIDVWRVCSILGYGLLPVIGLAFLGIAVSLKGGVGQGLATLTIAWSTYASTRLFEKALNMSQQRYLVAYPVALVYAIFVLITVF
Sbjct:    1 MASYGHHQPQQWYAGGPSSFDTRAGAMAGAPGGSYPAPGMSGAGTVPGSNYLAQGVSGGSTMVNGGGGQWGGSMDSGGGEEDYSMEPPLLVELGINFQHIWEKTKTVLMPLGSMDEHIMDDADLAGPLFFLLSFGIFLLMTGKVHFGYIYGFGVSGCIAMYLVLNLLSPKDIDVWRVCSILGYGLLPVIGLAFLGIAVSLKGGVGQGLATLTIAWSTYASTRLFEKALNMSQQRYLVAYPVALVYAIFVLITVF 254          
BLAST of EWM26791.1 vs. NCBI_GenBank
Match: gi|325186291|emb|CCA20797.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 233.417 bits (594), Expect = 8.702e-74
Identity = 117/226 (51.77%), Postives = 154/226 (68.14%), Query Frame = 0
Query:   32 GGSYPAPGMSGAGTVPGSNYLAQGVSGGSTMVNGGGGQWGGSMDSGGGEEDYSMEPPLLVELGINFQHIWEKTKTVLMPLGSMDEHIMDDADLAGPLFFLLSFGIFLLMTGKVHFGYIYGFGVSGCIAMYLVLNLLSP-KDIDVWRVCSILGYGLLPVIGLAFLGIAVSLK--GGVGQGLATLTIAWSTYASTRLFEKALNMSQQRYLVAYPVALVYAIFVLITVF 254
            G +Y        G +P SNY A  V   +                   E DY  EPPLL ELGI+F+ IW KT++VL+P+  ++EHI+DDADLAGPL +   FG+ LL++ KVHFGYIYGFGV  C++MYL++NLLSP + ID++RVCS+LGY LLP+I LA L I +S+K  G VG  +A++   WST+ ++R FEKAL MS+Q+YLVAYP+ LVY+ FVLITVF
Sbjct:   20 GSNYTMDTSQSQGRIPPSNYAAPLVHDAAE------------------ESDYDNEPPLLEELGIHFEQIWVKTQSVLLPMKQINEHILDDADLAGPLVYCFVFGMCLLLSAKVHFGYIYGFGVISCLSMYLLMNLLSPQRTIDIYRVCSVLGYCLLPIIALAALNIVLSIKDLGFVGFAVASVCAMWSTHTASRFFEKALFMSEQKYLVAYPIMLVYSCFVLITVF 227          
BLAST of EWM26791.1 vs. NCBI_GenBank
Match: gi|953489714|emb|CEG47080.1| (Rab GTPase interacting factor, Golgi membrane protein [Plasmopara halstedii])

HSP 1 Score: 233.802 bits (595), Expect = 1.240e-73
Identity = 124/227 (54.63%), Postives = 155/227 (68.28%), Query Frame = 0
Query:   31 PGGSYPAPGMSGAGTVPGSNYLAQGVSGGSTMVNGGGGQWGGSMDSGGGEEDYSMEPPLLVELGINFQHIWEKTKTVLMPLGSMDEHIMDDADLAGPLFFLLSFGIFLLMTGKVHFGYIYGFGVSGCIAMYLVLNLLSP-KDIDVWRVCSILGYGLLPVIGLAFLGIAVSLK--GGVGQGLATLTIAWSTYASTRLFEKALNMSQQRYLVAYPVALVYAIFVLITVF 254
            P  + PA  M    + PG    A G S G   +NG      G  D    +E ++ EPPLL ELGINF HIW KT +VL+P   ++EHI+DDADLAGPL F   FG+ LL+  KVHFGYIYGFGV  CI +YL++NLLSP + ID++RVCS+LGY LLP+IGLA + I VS+K  G VG  LA++   WST+ ++R FEKAL M++Q+YLV YP  LVYA FVLITVF
Sbjct:   22 PSINTPASHMHNNNSGPGFQTTAPGSSSG---INGTVVSSTGYYDDEDTDE-FANEPPLLEELGINFDHIWAKTVSVLLPTKQINEHILDDADLAGPLVFCFLFGMCLLLAAKVHFGYIYGFGVLSCIFVYLLMNLLSPERTIDIYRVCSVLGYCLLPIIGLAAINIVVSVKDLGMVGFFLASVCTLWSTHTASRFFEKALYMTEQKYLVMYPTMLVYACFVLITVF 244          
BLAST of EWM26791.1 vs. NCBI_GenBank
Match: gi|1173928931|gb|OQR82327.1| (hypothetical protein ACHHYP_16226 [Achlya hypogyna])

HSP 1 Score: 231.876 bits (590), Expect = 3.380e-72
Identity = 123/234 (52.56%), Postives = 161/234 (68.80%), Query Frame = 0
Query:   29 GAPGGSYPAPGMSGAGTVPGSNYLAQGVSGGSTMVNGGGGQWGGSMDSGG-----GEEDYSMEPPLLVELGINFQHIWEKTKTVLMPLGSMDEHIMDDADLAGPLFFLLSFGIFLLMTGKVHFGYIYGFGVSGCIAMYLVLNLLSP-KDIDVWRVCSILGYGLLPVIGLAFLGIAVSLKG--GVGQGLATLTIAWSTYASTRLFEKALNMSQQRYLVAYPVALVYAIFVLITVF 254
            G P  S P P    +    GS+      S  S+ + G  G+ G    S G     G+EDY  EPPLL ELG+NF HIW KT++VL+P   + EHI+DD DLAGPL F   FG  LL++GK+HFGYIYGFGV G + M+ ++NLLSP + ID++RVCS+LGY LLP+I LA + I +S+KG   +G  LA L++AWST+ +TR FEKAL+MS+QR+L+AYP A+VY+ FVLITVF
Sbjct:   68 GQPSYSQPQPHSGNSPWFTGSD------SSPSSDMTGAMGRMGDGPSSTGQYGVGGDEDYENEPPLLEELGVNFGHIWMKTQSVLLPTKQITEHILDDTDLAGPLVFCFIFGTCLLLSGKIHFGYIYGFGVFGWVFMWAIMNLLSPTRTIDIYRVCSVLGYCLLPIIFLAAVNIIISVKGLNLIGFALAVLSVAWSTHTATRFFEKALHMSEQRFLIAYPTAMVYSCFVLITVF 295          
BLAST of EWM26791.1 vs. NCBI_GenBank
Match: gi|635361409|emb|CCI49643.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 224.942 bits (572), Expect = 8.761e-71
Identity = 108/188 (57.45%), Postives = 144/188 (76.60%), Query Frame = 0
Query:   71 GGSMDSGGGEED-YSMEPPLLVELGINFQHIWEKTKTVLMPLGSMDEHIMDDADLAGPLFFLLSFGIFLLMTGKVHFGYIYGFGVSGCIAMYLVLNLLSP-KDIDVWRVCSILGYGLLPVIGLAFLGIAVSLK--GGVGQGLATLTIAWSTYASTRLFEKALNMSQQRYLVAYPVALVYAIFVLITVF 254
              S+ S   EE  Y  EPPLL ELGI+F+ IW KT++VL+P+  ++EHI+DDADLAGPL +   FG+ LL++ KVHFGYIYGFG   C++MYL++NLLSP + ID++RVCS+LGY LLP+I LA L I +S+K  G +G  +A++   WST+ ++R FEKAL MS+Q+YLVAYP+ LVY+ FVLITVF
Sbjct:   17 STSLASDAAEETPYENEPPLLEELGIHFEQIWIKTQSVLLPMKKINEHILDDADLAGPLVYCFVFGMCLLLSAKVHFGYIYGFGAISCLSMYLLMNLLSPQRTIDIYRVCSVLGYCLLPIIALAALNIVLSIKDLGLLGFVVASVCAIWSTHTASRFFEKALFMSEQKYLVAYPIMLVYSCFVLITVF 204          
BLAST of EWM26791.1 vs. NCBI_GenBank
Match: gi|673040837|ref|XP_008874379.1| (hypothetical protein H310_09938 [Aphanomyces invadans] >gi|574470121|gb|ETV97133.1| hypothetical protein H310_09938 [Aphanomyces invadans])

HSP 1 Score: 227.254 bits (578), Expect = 9.224e-71
Identity = 123/248 (49.60%), Postives = 160/248 (64.52%), Query Frame = 0
Query:   28 AGAPGGSYPAPGMSGAGTVPGSNYLAQGVSGGSTMVNGGGGQW-------------GGSMDSGGGE-----EDYSMEPPLLVELGINFQHIWEKTKTVLMPLGSMDEHIMDDADLAGPLFFLLSFGIFLLMTGKVHFGYIYGFGVSGCIAMYLVLNLLSP-KDIDVWRVCSILGYGLLPVIGLAFLGIAVSLKG--GVGQGLATLTIAWSTYASTRLFEKALNMSQQRYLVAYPVALVYAIFVLITVF 254
            + A  GSY AP  +G  T PG     Q  S  +   +  GG W              GSM S G +     +D+  EPPL+ ELGINF+HIW KT+ VL+P  S+ EHI+DD DLAGPL F   FG+ LLM+ K+HFGYIYGFG+ GC++M+ ++NL+SP K IDV+RVCS+LGY  LP+I LA + I   +K    +G  LA L +AWST A+TR F+K L+M +QR+L+AYP A+VY  FVLITVF
Sbjct:   29 SDAHAGSYGAPQSAGHSTYPGGQGFVQ--STYTQQPHPPGGPWYAGDLSAPSSSPLAGSMGSLGDQSVSYGDDFENEPPLMEELGINFEHIWTKTQAVLIPTTSVSEHILDDVDLAGPLVFAFGFGMLLLMSAKIHFGYIYGFGLVGCLSMWTLMNLISPTKTIDVYRVCSVLGYSWLPIILLAAINIVAPIKDLKAIGFVLAFLCVAWSTQAATRFFDKYLHMKEQRWLIAYPTAMVYTCFVLITVF 274          
BLAST of EWM26791.1 vs. NCBI_GenBank
Match: gi|675196243|ref|XP_008907006.1| (hypothetical protein PPTG_13047 [Phytophthora parasitica INRA-310] >gi|567958665|gb|ETK84252.1| hypothetical protein L915_10767 [Phytophthora parasitica] >gi|567987386|gb|ETL37692.1| hypothetical protein L916_10657 [Phytophthora parasitica] >gi|568092920|gb|ETN07721.1| hypothetical protein PPTG_13047 [Phytophthora parasitica INRA-310] >gi|570324959|gb|ETO72907.1| hypothetical protein F444_11112 [Phytophthora parasitica P1976] >gi|570952039|gb|ETP17296.1| hypothetical protein F441_08305 [Phytophthora parasitica CJ01A1] >gi|570981778|gb|ETP42123.1| hypothetical protein F442_10944 [Phytophthora parasitica P10297])

HSP 1 Score: 226.098 bits (575), Expect = 9.634e-71
Identity = 123/231 (53.25%), Postives = 158/231 (68.40%), Query Frame = 0
Query:   30 APGGSYPAPGMSGAGTVPGSNYLAQG---VSGGSTMVNGGGGQWGGSMDSGGGEEDYSMEPPLLVELGINFQHIWEKTKTVLMPLGSMDEHIMDDADLAGPLFFLLSFGIFLLMTGKVHFGYIYGFGVSGCIAMYLVLNLLSP-KDIDVWRVCSILGYGLLPVIGLAFLGIAVSLK--GGVGQGLATLTIAWSTYASTRLFEKALNMSQQRYLVAYPVALVYAIFVLITVF 254
            AP G YP   M+     P S+    G     G S+ ++G  G      D  G E++++ EPPLL ELGINF+HIW KT +VL+P   ++EHI+DDADLAGPL F   FG+ LL+  KVHFGYIYGFGV  C+ MYL++NLLSP + ID++RVCS+LGY LLP+IGLA + I VS+K  G  G  LA++   WST+ ++R FEKAL M++Q+YLV YP  LVYA FVLI VF
Sbjct:   16 APEGEYPP--MNAQAAHPNSSNSGPGFHPAPGSSSGLSGTVGSSASYYDDDGDEDEFANEPPLLEELGINFEHIWAKTVSVLLPTKQINEHILDDADLAGPLVFCFLFGMCLLLAAKVHFGYIYGFGVLSCLFMYLLMNLLSPERTIDIYRVCSVLGYCLLPIIGLAAINIVVSIKDLGIAGFLLASVCTLWSTHTASRFFEKALYMTEQKYLVMYPTMLVYACFVLIAVF 244          
BLAST of EWM26791.1 vs. NCBI_GenBank
Match: gi|566021335|gb|ETI44246.1| (hypothetical protein F443_11043 [Phytophthora parasitica P1569] >gi|568016665|gb|ETL90842.1| hypothetical protein L917_10556 [Phytophthora parasitica] >gi|568047038|gb|ETM44137.1| hypothetical protein L914_10600 [Phytophthora parasitica])

HSP 1 Score: 225.713 bits (574), Expect = 1.426e-70
Identity = 124/231 (53.68%), Postives = 159/231 (68.83%), Query Frame = 0
Query:   30 APGGSYPAPGMSGAGTVPGSNYLAQG---VSGGSTMVNGGGGQWGGSMDSGGGEEDYSMEPPLLVELGINFQHIWEKTKTVLMPLGSMDEHIMDDADLAGPLFFLLSFGIFLLMTGKVHFGYIYGFGVSGCIAMYLVLNLLSP-KDIDVWRVCSILGYGLLPVIGLAFLGIAVSLK--GGVGQGLATLTIAWSTYASTRLFEKALNMSQQRYLVAYPVALVYAIFVLITVF 254
            AP G YP   M+     P S+    G     G S+ ++G  G   G  D  G E++++ EPPLL ELGINF+HIW KT +VL+P   ++EHI+DDADLAGPL F   FG+ LL+  KVHFGYIYGFGV  C+ MYL++NLLSP + ID++RVCS+LGY LLP+IGLA + I VS+K  G  G  LA++   WST+ ++R FEKAL M++Q+YLV YP  LVYA FVLI VF
Sbjct:   16 APEGEYPP--MNAQAAHPNSSNSGPGFHPAPGSSSGLSGTVGSSAGYYDDDGDEDEFANEPPLLEELGINFEHIWAKTVSVLLPTKQINEHILDDADLAGPLVFCFLFGMCLLLAAKVHFGYIYGFGVLSCLFMYLLMNLLSPERTIDIYRVCSVLGYCLLPIIGLAAINIVVSIKDLGIAGFLLASVCTLWSTHTASRFFEKALYMTEQKYLVMYPTMLVYACFVLIAVF 244          
BLAST of EWM26791.1 vs. NCBI_GenBank
Match: gi|301098513|ref|XP_002898349.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262105120|gb|EEY63172.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 232.261 bits (591), Expect = 1.918e-70
Identity = 127/231 (54.98%), Postives = 160/231 (69.26%), Query Frame = 0
Query:   30 APGGSYPAPGMSGAGTVPGSNYLAQGVS---GGSTMVNGGGGQWGGSMDSGGGEEDYSMEPPLLVELGINFQHIWEKTKTVLMPLGSMDEHIMDDADLAGPLFFLLSFGIFLLMTGKVHFGYIYGFGVSGCIAMYLVLNLLSP-KDIDVWRVCSILGYGLLPVIGLAFLGIAVSLK--GGVGQGLATLTIAWSTYASTRLFEKALNMSQQRYLVAYPVALVYAIFVLITVF 254
            AP G YP   M+   T P SN    G S   G S  ++G  G   G  D  GG+++++ EPPLL ELGINF HIW KT +VL+P   ++EHI+DDADLAGPL F   FG+ LL+  KVHFGYIYGFGV  C+ MYL++NLLSP + ID++RVCS+LGY LLP+IGLA + I VS+K  G  G  LA++   WST+ ++R FEKAL M++Q+YLV YP  LVYA FVLI VF
Sbjct:  231 APEGEYPP--MNAQPTHPNSNNSGAGFSPAPGSSNGLSGTVGSNAGYYDDDGGDDEFANEPPLLEELGINFDHIWAKTVSVLLPTKQINEHILDDADLAGPLVFCFLFGVCLLLAAKVHFGYIYGFGVLSCLFMYLLMNLLSPERTIDIYRVCSVLGYCLLPIIGLAAINIVVSVKDLGIAGFLLASVCTLWSTHTASRFFEKALYMTEQKYLVMYPTMLVYACFVLIAVF 459          
BLAST of EWM26791.1 vs. NCBI_GenBank
Match: gi|970646661|gb|KUF86741.1| (YIPF5 protein [Phytophthora nicotianae] >gi|970655367|gb|KUF93540.1| Dipeptidyl peptidase 8 [Phytophthora nicotianae])

HSP 1 Score: 225.328 bits (573), Expect = 2.431e-70
Identity = 121/231 (52.38%), Postives = 153/231 (66.23%), Query Frame = 0
Query:   30 APGGSYPAPGMSGAGTVPGSNYLAQGVSGGSTMVNGGGGQWGGSMDSGGGEED---YSMEPPLLVELGINFQHIWEKTKTVLMPLGSMDEHIMDDADLAGPLFFLLSFGIFLLMTGKVHFGYIYGFGVSGCIAMYLVLNLLSP-KDIDVWRVCSILGYGLLPVIGLAFLGIAVSLK--GGVGQGLATLTIAWSTYASTRLFEKALNMSQQRYLVAYPVALVYAIFVLITVF 254
            AP G YP   M+     P S+    G        +G  G  G S      + D   ++ EPPLL ELGINF+HIW KT +VL+P   ++EHI+DDADLAGPL F   FG+ LL+  KVHFGYIYGFGV  C+ MYL++NLLSP + ID++RVCS+LGY LLP+IGLA + I VS+K  G  G  LA++   WST+ ++R FEKAL M++Q+YLV YP  LVYA FVLI VF
Sbjct:   16 APEGEYPP--MNAQAAHPNSSNSGPGFHPAPDSSSGLSGTVGSSASYYDDDGDEDEFANEPPLLEELGINFEHIWAKTVSVLLPTKQINEHILDDADLAGPLVFCFLFGMCLLLAAKVHFGYIYGFGVLSCLFMYLLMNLLSPERTIDIYRVCSVLGYCLLPIIGLAAINIVVSIKDLGIAGFLLASVCTLWSTHTASRFFEKALYMTEQKYLVMYPTMLVYACFVLIAVF 244          
The following BLAST results are available for this feature:
BLAST of EWM26791.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553185644|ref|XP_005854283.1|0.000e+0100.00yip1 domain-containing protein [Nannochloropsis ga... [more]
gi|325186291|emb|CCA20797.1|8.702e-7451.77conserved hypothetical protein [Albugo laibachii N... [more]
gi|953489714|emb|CEG47080.1|1.240e-7354.63Rab GTPase interacting factor, Golgi membrane prot... [more]
gi|1173928931|gb|OQR82327.1|3.380e-7252.56hypothetical protein ACHHYP_16226 [Achlya hypogyna... [more]
gi|635361409|emb|CCI49643.1|8.761e-7157.45unnamed protein product [Albugo candida][more]
gi|673040837|ref|XP_008874379.1|9.224e-7149.60hypothetical protein H310_09938 [Aphanomyces invad... [more]
gi|675196243|ref|XP_008907006.1|9.634e-7153.25hypothetical protein PPTG_13047 [Phytophthora para... [more]
gi|566021335|gb|ETI44246.1|1.426e-7053.68hypothetical protein F443_11043 [Phytophthora para... [more]
gi|301098513|ref|XP_002898349.1|1.918e-7054.98conserved hypothetical protein [Phytophthora infes... [more]
gi|970646661|gb|KUF86741.1|2.431e-7052.38YIPF5 protein [Phytophthora nicotianae] >gi|970655... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3867rna3867Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications