rna3860, rna3860 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3860
Unique Name	rna3860
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1779
Alignment location	CM002462.1:264503..266590 +

Link to JBrowse

Properties


Property Name	Value
Product	autophagy-related 7 isoform cra_a
Orig transcript id	gnl\|cribi\|Naga_100018g46.2789.mrna
Orig protein id	gnl\|cribi\|Naga_100018g46.2789
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:264503..266590 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100018g46	gene3714	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3860	rna3860-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26809.1	cds3851	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:264503..266590+
coding sequence from alignment at CM002462.1:264503..266590+

mRNA sequence

>rna3860 ID=rna3860|Name=rna3860|organism=Nannochloropsis gaditana|type=mRNA|length=1779bp
ATGAAGGTGATTGCATTCATGACTTTAACCGTGACGGGTCTCATTTCTTG
CTGCTCAGGCCGCGCATTAGCCAGCATCACCTATGCTGCCGGTAGAAGGC
AAAACATTGCTGGCTTTCTAGGGAGGGCCCGAATTAGCACATTCCGATCA
CCAACGAGTACTAAGCAGCCTTTACAGCAGATTGATCAGCCAAAAAGCTC
ACCCGATGCCTTGTTTGCCCGCCGCATGTCCACGTTGATGGCGGCTGTGA
GGGTCCGTTTCGCGCCTTCACCTACTGGGACGTTGCATGTGGGAGGAGCT
CGCACGGCATTGTACAATTATCTGGTAGCCAGGCAACATAAGGACGGCGT
CTTCGTTCTCCGCATCGAAGATACGGACACGGCAAGGTCCACGCGGGAAT
CCGAGGAGAGCATGTTGGCAGATTTGCGTTTTTTGGGGCTGGACTGGGAC
GAAGGGCCGGATAAACCGGGCGCGGTGGGACCGTACCGTCAATCAGAACG
CATTGACGTCTACAAGAAAGTGGCGCAGCAACTATTGGAGTCCGGAGATG
CTTACCCTTGTTTTTGCACGGAAGAAGAGCTGGAGGCCAAGCGGCAGGCG
GCGGAGGCGGCCGGGAAACCTCCTCAATACGACAGAACGTGGCGAGACGC
GGACCCGGCACTGGTAAAGGAGAAGATTGAGGCAGGAGAGCCGTATACTG
TCCGGTTCAAGGTAGCCCCGGGCAGGCGGGTGGAGATTGATGACGCGGTG
CGTGGTACTGTGGGATGGGACGCAGACGCGACGGTGGGGGACTTCATCCT
CCTTCGGTCGAGCGGGATGCCTGTCTATAATTTCTGCGTGGCCGTGGATG
ATGCCTTGATGGGTATCACCACCGTGATTCGCGCGGAGGAACACCTGACC
AACACATTGCGGCAGTGTTTGATTTTGGAGGCGCTCAAGTACCCCGCACC
CAAGTACGCCCATTGTTCGCTCATTCTCGGGGAGGATCGGTCCAAGCTCT
CCAAGCGGCACGGGGCAACCTCGGTGGATCAGTTCCGGGCCCAGGGTTTC
CTGCCTGACGCCATGTTGAACTATCTGGCCCTGCTGGGTTGGAACGATGG
GACCGAGCAGGAGGTGTTCTCCAGACAGGAGCTGATCGACCGGTTTTCCT
TGAATCGGGTAGTGAAAAGCCCCTCTGTCTTTGACATGGCCAAGTTGCGG
TGGGTGAATGGGCAGCATCTGAGGGCCTTGCCGGACGAGAACTTGGTGCC
ATTGGTAGGGGCGTGCTTGGAGGAGGAAGGGATGGTCAAGGTTGGGGCCG
AAGGCGCGGCTTTTGTGTCCTACGCTACTCAGGTGGCGAAGGGCTCCATG
GAATTGGTGAACGATGCGGCGACTATTGTCGGTGATGTCTTGACGTACCC
CTTGGAAGAAACCTTGGCGTCTGGGGAGGCGGATGCCTTGGTAGCAGAAG
GCTTGTGGGAGATGGCCAGGGAAGTGGTGAGTGCGTTCGAAGCGAACGAG
ATGCCGCGAGGAAAGGAAGAAGATTTTGCCGCGTTATGGAAGGCGTGGGT
GAAAGCTGTTGGTAAGAAAATGGGGAGGAAAGGAAAGCAGCTCTTTCACC
CTATCCGCCTCGCATTGACGGGACGCATGAGTGGACCGGATGTAGGCGAG
CAAATTAGGATGTTGCATTTGGCGGAGACAGGGGCCACTAGCGTTGTAGA
CTTGCCCACGCGAATTGAAAAATTGAGAGAGATCCTGCGCAAGGCTCCCG
TTGAAGCCAAGGAGCCCGTAGCGGGTTGA

protein sequence of rna3860

>rna3860-protein ID=rna3860-protein|Name=rna3860|organism=Nannochloropsis gaditana|type=polypeptide|length=695bp
MLRGHQTECFHLLVRLSHGGQCPALPALEGARPFGRGWARGRKPIFFRDR
VLSSVPGLAGVPSTSLPGDGRRVLSSLLPHPPFHDPPPQTADDREGGSSS
LSLEVCPLDAYEKMDRSHGEQPQVMFGYVDPGTVPDAPGWPLRNFLLLLA
NRWGLCEATVVCYRGRVTGPTHDPEAGGNGSHLNPLGGAQVMRGSFVLHV
SLAPLASSPSSSPPGALTTTGWEMHKGKYMPRRVDLSATMDPIRLAEQSV
DLNLKLMRWRLLPALDIAALARTKCLLLGAGTLGCSVARGLLGWGVRTIT
LVDNGRVALSNPVRQSLFEYTDCADGGKPKALAAAAALRRIFPGVVAEGH
VMTIPMPGHPVSSPAEEASARREVELLDKLVAEHDVIFLLTDTRESRWLP
TVLGAVHDKILVNAALGFDTFMVMRHGAQPNPPLTSVAPSCSGGEDGGTA
GESKARTGKGSPGPADGDGIGCYFCNDVVAPDDSTKDRTLDQQCTVTRPG
LAPVASALAVELMVALLHHPLRHRAPADGGEASGLGHRFLDDPDRPLGIL
PQQIRGYLAHFTTILPVTRAFQHCTGCAPAVIEAYKREGAGLVVRVCNEQ
GVLEEMTGLAQMRRETDALELSWSEDEDEEEEEELGGGGKEKEVEMGEKE
QKGREKPTQEWDVKEEEKKSGGLDLALEDLAIEHAGIRRTGGNCE

mRNA from alignment at CM002462.1:264503..266590+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3860 ID=rna3860|Name=rna3860|organism=Nannochloropsis gaditana|type=mRNA|length=2088bp|location=Sequence derived from alignment at CM002462.1:264503..266590+ (Nannochloropsis gaditana)
ATGCTTCGCGGACATCAAACGGAATGTTTTCATCTACTGGTTCGCCTTTC
CCACGGTGGTCAGTGCCCCGCCCTTCCGGCACTTGAAGGCGCCCGCCCCT
TTGGCAGAGgctgggcaaggggaaggaaacccATTTTTTTCAGGGACCGA
GTGCTCTCTTCTGTACCAGGGCTTGCTGGCGTACCGTCAACGTCGCTTCC
AGGAGACGGGCGACgcgtcctgtcctcccttcttcctcatcctccgttcc
acgacccccccccccaaaccgCGGAcgaccgggaggggggatcctcctcc
ctctccctggagGTCTGCCCTTTGGATGCCTACGAGAAGATGGATCGCTC
CCATGGAGAGCAACCACAGGTGATGTTTGGATACGTAGACCCCGGAACGG
TGCCGGATGCGCCGGGGTGGCCCCTGCGAAATTTCTTGCTGCTCCTTGCG
AACCGGTGGGGGCTCTGCGAGGCAACCGTCGTCTGCTACCGCGGTCGGGT
CACGGGGCCTACGCATGATCCAGAAGCAGGTGGTAATGGAAGCCACTTGA
ATCCCCTGGGAGGGGCCCAGGTGATGCGGGGCAGCTTCGTGCTGCACGtc
tccctcgcgcccctggcgtcctcgccttcctcttccccccccggcgccct
cACGACCACAGGCTGGGAGATGCACAAAGGCAAATACATGCCTCGACGCG
TCGACCTCTCTGCCACCATGGACCCTATCCGCCTGGCCGAGCAGTCCGTG
GATCTGAATCTGAAGCTCATGCGCTGGCGGCTGCTCCCAGCCCTGGACat
cgccgccctggcccgcaCCAAATGCCTCTTGCTAGGCGCCGGGACCCTTG
GCTGCAGTGTGGCACGGGGCTTGCTTGGGTGGGGCGTGCGGACGATCACG
CTGGTGGACAACGGGCGGGTCGCGCTCTCGAACCCTGTCCGTCAATCCCT
CTTTGAGTACACGGACTGcgcggacgggggaaagcccaaggccctggcgg
cggcggcggctttgCGGAGGATTTTTCCCGGGGTGGTTGCGGAGGGACAT
GTCATGACCATCCCTATGCCGGGCCACCCAGTTTCCTCGCCGGCCGAAGA
GGCAAGCGcgcggcgggaggtggagttGTTGGACAAGCTGGTGGCGGAGC
ACGACGTGATCTTCCTGCTTACCGACACACGGGAGAGTCGATGGTTGCCG
ACCGTCCTGGGGGCCGTGCACGACAAGATCCTCGTGAATGCGGCCTTGGG
CTTTGACACCTTCATGGTGATGCGTCATGGTGCTCAACCGAATCCCCCCC
TGACCTCGGTCGCGCCATCCTGCAgcggtggggaggatgggggtaCTGCG
GGGGAATCGAAAgccaggacggggaagggaagcccCGGCCCGGCGGATGG
AGACGGCATTGGCTGCTATTTCTGCAATGACGTGGTGGCTCCCGACGACT
CGACCAAAGACCGCACGCTCGATCAACAGTGCACGGTCACGCGGCCCGGC
CTGGCGCCTGTAGCCTCTGCGCTGGCGGTGGAACTCATGGTAGCGTtgct
ccaccaccccctcaGGCATCGGGCACCCGCCGACGGGGGCGAGGCAAGCG
GTTTGGGGCATCGCTTTCTGGACGATCCGGACCGGCCGTTGGGAATTTTA
CCCCAGCAGATTCGTGGGTATTTGGCGCATTTCACAACGATTTTGCCAGT
GACGAGGGCGTTCCAGCATTGTACAGGCTGCGCTCCTGCTGTCATCGAAG
CCtacaagagggagggggcggggctaGTGGTGCGTGTCTGCAACGAGCAG
GGGGTCTTGGAGGAAATGACGGGTTTGGcgcagatgaggagggagaccga
CGCGTTGGAACTTTCGTGgagtgaggatgaggacgaggaggaagaagagg
agttgggaggtggtgggaaggagaaggaagtggaaatgggggaaaaggag
caaaagggaagggagaagccgACGCAAGAATGGgatgtgaaagaggagga
aaagaagagtgGTGGTTTGGACTTGGCGCTTGAGGATTTGGCGATCGAGC
ATGCAGGAATAAGGAGAACAGGGGGCAATTGTGAGTGA

Coding sequence (CDS) from alignment at CM002462.1:264503..266590+

>rna3860 ID=rna3860|Name=rna3860|organism=Nannochloropsis gaditana|type=CDS|length=2088bp|location=Sequence derived from alignment at CM002462.1:264503..266590+ (Nannochloropsis gaditana)
ATGCTTCGCGGACATCAAACGGAATGTTTTCATCTACTGGTTCGCCTTTC
CCACGGTGGTCAGTGCCCCGCCCTTCCGGCACTTGAAGGCGCCCGCCCCT
TTGGCAGAGgctgggcaaggggaaggaaacccATTTTTTTCAGGGACCGA
GTGCTCTCTTCTGTACCAGGGCTTGCTGGCGTACCGTCAACGTCGCTTCC
AGGAGACGGGCGACgcgtcctgtcctcccttcttcctcatcctccgttcc
acgacccccccccccaaaccgCGGAcgaccgggaggggggatcctcctcc
ctctccctggagGTCTGCCCTTTGGATGCCTACGAGAAGATGGATCGCTC
CCATGGAGAGCAACCACAGGTGATGTTTGGATACGTAGACCCCGGAACGG
TGCCGGATGCGCCGGGGTGGCCCCTGCGAAATTTCTTGCTGCTCCTTGCG
AACCGGTGGGGGCTCTGCGAGGCAACCGTCGTCTGCTACCGCGGTCGGGT
CACGGGGCCTACGCATGATCCAGAAGCAGGTGGTAATGGAAGCCACTTGA
ATCCCCTGGGAGGGGCCCAGGTGATGCGGGGCAGCTTCGTGCTGCACGtc
tccctcgcgcccctggcgtcctcgccttcctcttccccccccggcgccct
cACGACCACAGGCTGGGAGATGCACAAAGGCAAATACATGCCTCGACGCG
TCGACCTCTCTGCCACCATGGACCCTATCCGCCTGGCCGAGCAGTCCGTG
GATCTGAATCTGAAGCTCATGCGCTGGCGGCTGCTCCCAGCCCTGGACat
cgccgccctggcccgcaCCAAATGCCTCTTGCTAGGCGCCGGGACCCTTG
GCTGCAGTGTGGCACGGGGCTTGCTTGGGTGGGGCGTGCGGACGATCACG
CTGGTGGACAACGGGCGGGTCGCGCTCTCGAACCCTGTCCGTCAATCCCT
CTTTGAGTACACGGACTGcgcggacgggggaaagcccaaggccctggcgg
cggcggcggctttgCGGAGGATTTTTCCCGGGGTGGTTGCGGAGGGACAT
GTCATGACCATCCCTATGCCGGGCCACCCAGTTTCCTCGCCGGCCGAAGA
GGCAAGCGcgcggcgggaggtggagttGTTGGACAAGCTGGTGGCGGAGC
ACGACGTGATCTTCCTGCTTACCGACACACGGGAGAGTCGATGGTTGCCG
ACCGTCCTGGGGGCCGTGCACGACAAGATCCTCGTGAATGCGGCCTTGGG
CTTTGACACCTTCATGGTGATGCGTCATGGTGCTCAACCGAATCCCCCCC
TGACCTCGGTCGCGCCATCCTGCAgcggtggggaggatgggggtaCTGCG
GGGGAATCGAAAgccaggacggggaagggaagcccCGGCCCGGCGGATGG
AGACGGCATTGGCTGCTATTTCTGCAATGACGTGGTGGCTCCCGACGACT
CGACCAAAGACCGCACGCTCGATCAACAGTGCACGGTCACGCGGCCCGGC
CTGGCGCCTGTAGCCTCTGCGCTGGCGGTGGAACTCATGGTAGCGTtgct
ccaccaccccctcaGGCATCGGGCACCCGCCGACGGGGGCGAGGCAAGCG
GTTTGGGGCATCGCTTTCTGGACGATCCGGACCGGCCGTTGGGAATTTTA
CCCCAGCAGATTCGTGGGTATTTGGCGCATTTCACAACGATTTTGCCAGT
GACGAGGGCGTTCCAGCATTGTACAGGCTGCGCTCCTGCTGTCATCGAAG
CCtacaagagggagggggcggggctaGTGGTGCGTGTCTGCAACGAGCAG
GGGGTCTTGGAGGAAATGACGGGTTTGGcgcagatgaggagggagaccga
CGCGTTGGAACTTTCGTGgagtgaggatgaggacgaggaggaagaagagg
agttgggaggtggtgggaaggagaaggaagtggaaatgggggaaaaggag
caaaagggaagggagaagccgACGCAAGAATGGgatgtgaaagaggagga
aaagaagagtgGTGGTTTGGACTTGGCGCTTGAGGATTTGGCGATCGAGC
ATGCAGGAATAAGGAGAACAGGGGGCAATTGTGAGTGA

Synonyms

Publications