rna3849, rna3849 (mRNA) Nannochloropsis gaditana

Overview
Namerna3849
Unique Namerna3849
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length660
Alignment locationCM002462.1:204356..205927 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100018g60.2776.mrna
Orig protein idgnl|cribi|Naga_100018g60.2776
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:204356..205927 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100018g60gene3704Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3849rna3849-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26796.1cds3840Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3849 ID=rna3849|Name=rna3849|organism=Nannochloropsis gaditana|type=mRNA|length=660bp
ATGTTTGAAGTGCATGGCTTGTGGCCGGTTGTACATTTGGGTATAGCAGG
CGCCATCTTCGCCCTTTTCCTTGTATGTCTTGTGCAATTGTGGTATCGAT
ACTTCCGACAGCGCGGCGTGGGAAGCGAAATTCCGGTCCAGTACACAGAA
CTCCCGCAGAGACATGGTCATGCACGATTTGATCTGAGCGATGCACGATG
TGACGAAGGCCATTTTATCGACGAAGTGGGAGAAGATGAGGAATACGGGG
AAGACATCTTTGATGCCCTGTACGGGGACGAGGAGGAGGAGGAATTTCGT
GGGGGGGCAAAAAGGAGGCCAGACGATGGACGAAGACTGTTCGGAGGGAG
AAGAGATCAAGGCATTTTTTCGTCATTCCCTACCCCGCGTCCACCACGAA
GAAATGCAGCAACCACAGTGCCGACGAGAGGCGATGTGGACTGTGCGGAC
GTGTCAGAGACGAAATCGGTCGCGAAATACACCGAAAAGTCCCGTCCAGA
ACCCGCAAGGGACCACGGAGGACTTTCTCAAGGAGGAGGGAAGGAGAAGC
GTGGGGAAGAGGAGCATGACACGTCAGGCAGGATCTCGGAAAGGAATGGG
GTGGAAGGGGAAAAGGGGGACCTGGAGGCCGCACTAGTGGAGCAAGAAGG
GAGTGTATAG
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protein sequence of rna3849

>rna3849-protein ID=rna3849-protein|Name=rna3849|organism=Nannochloropsis gaditana|type=polypeptide|length=369bp
MHILHPHRAEKRRLCLSGYIFMTSTVGHDPNAFHQLPGDYASENKHDENG
TEVSVVERVKEEYLHPCCQKELEATRARTKLMTKLTAADITRHAMERRRN
VFGPGQANDQHQHVHGTGCCSLTVDYPALSDLRERQGGGSRAMEVGMPVG
SGDGDEQALLRQAEREQNGDEEEEESDDEWLQELEDGDDGGFQEVRRAEM
VRRALEQAELQALGVGLHTYVAPARALKIVQRASCPLVMHCYDPYSPISA
ALDLELEVLAARYPGTRFLRTAFGANGGTRDGRGGQGSKVLRESLRVPAP
APTGEYRKSVVLAVKEGRLVDSCYDFGRRFGDVKEGRVYGEAVEQWLQHC
RVLERASVKSSAAAFSVGY
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mRNA from alignment at CM002462.1:204356..205927-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3849 ID=rna3849|Name=rna3849|organism=Nannochloropsis gaditana|type=mRNA|length=1572bp|location=Sequence derived from alignment at CM002462.1:204356..205927- (Nannochloropsis gaditana)
ATGCACATACTCCATCCCCACAGGGCTGAGAAAAGGCGGCTTTGTCTGTC
AGGTTACATCTTCATGACGTCGACCGTAGGCCATGACCCCAATGCATTCC
ATCAACTGCCCGGTGACTATGCCTCCGAAAATAAACACGACGAAAATGGC
ACGGAAGTCAGCGTAGTAGAGCGTGTGAAGGAAGAATACCTCCACCCTTG
CTGCCAAAAAGAGTTGGAAGCCACACGGGCTCGGACCAAACTCATGACCA
AATTGACGGCAGCCGACATCACGAGGCATGCGATGGAGCGCAGAAGGAAC
GTGTTCGGCCCGGGGCAGGCCAATGATCAACACCAGCATGTGCATGGCAC
GGGCTGTTGTTCCCTGACGGTAGATTATCCCGCGTTGTCCGACCTCAGAG
AAAGACAAGGTGGTGGCAGCAGGGCTATGGAAGTTGGCATGCCCGTCGGA
TCAGGAGATGGCGACGAACAAGCTCTCCTCCGCCAAGCAGAGAGGGAACA
AAATGGTGACGAGGAAGAGGAAGAGAGTGACGACGAGTGGTTGCAGGAAT
TGGAGGACGGGGACGACGGAGGTTTTCAGGAAGTCCGCCGGGCGGAAATG
GTGCGGAGGGCGTTGGAGCAGGCGGAATTGCAGGCGCTCGGCGTGGGCTT
ACACACTTACGTAGCGCCTGCGCGGGCCTTGAAAATAGTGCAGAGGGCAT
CCTGTCCCTTGGTCATGCACTGCTATGATCCGTACAGCCCCATCAGCGCC
GCCCTTGACTTAGAATTGGAGGTTCTGGCTGCCCGTTACCCAGGCACACG
CTTCCTGCGCACGGCCTTTGGGGCTAACGGAGGGACGAGGGACGGTCGTG
GGGGACAGGGATCGAAAGTGCTGCGTGAGAGCCTTCGTGTGCCGGCGCCA
GCGCCCACGGGGGAGTATCGAAAATCGGTAGTATTGGCTGTGAAAGAGGG
AAGGCTAGTGGATTCCTGCTATGACTTTGGGAGGCGGTTCGGGGACGTGA
AGGAGGGACGGGTGTACGGCGAGGCAGTGGAGCAGTGGTTGCAGCACTGT
CGCGTGCTTGAGAGGGCGAGCGTGTGCGTGGACGACGCGAGGCGGATGGA
CGGAGAAGGAAAGGGGGAGGGAAAGAGGGGGGAGGGGGGGGCTGCGGTGG
ATGAGGAGGGAGGGCGGGGCATCGAGGGGAAAGGAGAGGTTTGGTGGAGA
GGGGGAGGAGACGGAAGAGGAGGAGGAGGAGGGGGAGGAAATTTACGACT
GTGGAGTGGAGGGATGCGCCAAGACCTTCGCGCATGCTCACGTGGGGGGG
GAAGACGGTGGGGTGCCGAGGGAGTTCGCGTTCTCGGTGAACGAGGCAGC
CAATGCGTGAGCTGAACGACAGGAAAGCAATATACAAATGCTGGGGCGCC
AGATTTAGCGTGCATGCCCGCACCCACACACCCTGGACAGCTCGCTTTGA
GGGGCTTCCTGACATTGCTTTCGGGGCTGCCGGAAAAGCCTTTTCTCCTT
GACCCTCCTCCCGTGCCGCCCCCTCCCTTACCCAGCAAATCTTCCGCGGC
GGCATTTTCGGTCGGCTACTGA
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Coding sequence (CDS) from alignment at CM002462.1:204356..205927-

>rna3849 ID=rna3849|Name=rna3849|organism=Nannochloropsis gaditana|type=CDS|length=2220bp|location=Sequence derived from alignment at CM002462.1:204356..205927- (Nannochloropsis gaditana)
CAAATCTTCCGCGGCGGCATTTTCGGTCGGCTACTGAATGCACATACTCC
ATCCCCACAGGGCTGAGAAAAGGCGGCTTTGTCTGTCAGGTTACATCTTC
ATGACGTCGACCGTAGGCCATGACCCCAATGCATTCCATCAACTGCCCGG
TGACTATGCCTCCGAAAATAAACACGACGAAAATGGCACGGAAGTCAGCG
TAGTAGAGCGTGTGAAGGAAGAATACCTCCACCCTTGCTGCCAAAAAGAG
TTGGAAGCCACACGGGCTCGGACCAAACTCATGACCAAATTGACGGCAGC
CGACATCACGAGGCATGCGATGGAGCGCAGAAGGAACGTGTTCGGCCCGG
GGCAGGCCAATGATCAACACCAGCATGTGCATGGCACGGGCTGTTGTTCC
CTGACGGTAGATTATCCCGCGTTGTCCGACCTCAGAGAAAGACAAGGTGG
TGGCAGCAGGGCTATGGAAGTTGGCATGCCCGTCGGATCAGGAGATGGCG
ACGAACAAGCTCTCCTCCGCCAAGCAGAGAGGGAACAAAATGGTGACGAG
GAAGAGGAAGAGAGTGACGACGAGTGGTTGCAGGAATTGGAGGACGGGGA
CGACGGAGGTTTTCAGGAAGTCCGCCGGGCGGAAATGGTGCGGAGGGCGT
TGGAGCAGGCGGAATTGCAGGCGCTCGGCGTGGGCTTACACACTTACGTA
GCGCCTGCGCGGGCCTTGAAAATAGTGCAGAGGGCATCCTGTCCCTTGGT
CATGCACTGCTATGATCCGTACAGCCCCATCAGCGCCGCCCTTGACTTAG
AATTGGAGGTTCTGGCTGCCCGTTACCCAGGCACACGCTTCCTGCGCACG
GCCTTTGGGGCTAACGGAGGGACGAGGGACGGTCGTGGGGGACAGGGATC
GAAAGTGCTGCGTGAGAGCCTTCGTGTGCCGGCGCCAGCGCCCACGGGGG
AGTATCGAAAATCGGTAGTATTGGCTGTGAAAGAGGGAAGGCTAGTGGAT
TCCTGCTATGACTTTGGGAGGCGGTTCGGGGACGTGAAGGAGGGACGGGT
GTACGGCGAGGCAGTGGAGCAGTGGTTGCAGCACTGTCGCGTGCTTGAGA
GGGCGAGCGTCAAATCTTCCGCGGCGGCATTTTCGGTCGGCTACTGAATG
CACATACTCCATCCCCACAGGGCTGAGAAAAGGCGGCTTTGTCTGTCAGG
TTACATCTTCATGACGTCGACCGTAGGCCATGACCCCAATGCATTCCATC
AACTGCCCGGTGACTATGCCTCCGAAAATAAACACGACGAAAATGGCACG
GAAGTCAGCGTAGTAGAGCGTGTGAAGGAAGAATACCTCCACCCTTGCTG
CCAAAAAGAGTTGGAAGCCACACGGGCTCGGACCAAACTCATGACCAAAT
TGACGGCAGCCGACATCACGAGGCATGCGATGGAGCGCAGAAGGAACGTG
TTCGGCCCGGGGCAGGCCAATGATCAACACCAGCATGTGCATGGCACGGG
CTGTTGTTCCCTGACGGTAGATTATCCCGCGTTGTCCGACCTCAGAGAAA
GACAAGGTGGTGGCAGCAGGGCTATGGAAGTTGGCATGCCCGTCGGATCA
GGAGATGGCGACGAACAAGCTCTCCTCCGCCAAGCAGAGAGGGAACAAAA
TGGTGACGAGGAAGAGGAAGAGAGTGACGACGAGTGGTTGCAGGAATTGG
AGGACGGGGACGACGGAGGTTTTCAGGAAGTCCGCCGGGCGGAAATGGTG
CGGAGGGCGTTGGAGCAGGCGGAATTGCAGGCGCTCGGCGTGGGCTTACA
CACTTACGTAGCGCCTGCGCGGGCCTTGAAAATAGTGCAGAGGGCATCCT
GTCCCTTGGTCATGCACTGCTATGATCCGTACAGCCCCATCAGCGCCGCC
CTTGACTTAGAATTGGAGGTTCTGGCTGCCCGTTACCCAGGCACACGCTT
CCTGCGCACGGCCTTTGGGGCTAACGGAGGGACGAGGGACGGTCGTGGGG
GACAGGGATCGAAAGTGCTGCGTGAGAGCCTTCGTGTGCCGGCGCCAGCG
CCCACGGGGGAGTATCGAAAATCGGTAGTATTGGCTGTGAAAGAGGGAAG
GCTAGTGGATTCCTGCTATGACTTTGGGAGGCGGTTCGGGGACGTGAAGG
AGGGACGGGTGTACGGCGAGGCAGTGGAGCAGTGGTTGCAGCACTGTCGC
GTGCTTGAGAGGGCGAGCGT
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Synonyms
Publications