EWM26796.1, cds3840 (CDS) Nannochloropsis gaditana

Overview
NameEWM26796.1
Unique Namecds3840
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:204855..205927 -
Alignment locationCM002462.1:204356..204392 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26796.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100018g60.2776.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:204855..205927 -
CM002462.1supercontigCM002462.1:204356..204392 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR012336Thioredoxin-like_fold
Homology
BLAST of EWM26796.1 vs. NCBI_GenBank
Match: gi|585108887|gb|EWM26796.1| (hypothetical protein Naga_100018g60 [Nannochloropsis gaditana])

HSP 1 Score: 758.829 bits (1958), Expect = 0.000e+0
Identity = 369/369 (100.00%), Postives = 369/369 (100.00%), Query Frame = 0
Query:    1 MHILHPHRAEKRRLCLSGYIFMTSTVGHDPNAFHQLPGDYASENKHDENGTEVSVVERVKEEYLHPCCQKELEATRARTKLMTKLTAADITRHAMERRRNVFGPGQANDQHQHVHGTGCCSLTVDYPALSDLRERQGGGSRAMEVGMPVGSGDGDEQALLRQAEREQNGDEEEEESDDEWLQELEDGDDGGFQEVRRAEMVRRALEQAELQALGVGLHTYVAPARALKIVQRASCPLVMHCYDPYSPISAALDLELEVLAARYPGTRFLRTAFGANGGTRDGRGGQGSKVLRESLRVPAPAPTGEYRKSVVLAVKEGRLVDSCYDFGRRFGDVKEGRVYGEAVEQWLQHCRVLERASVKSSAAAFSVGY 369
            MHILHPHRAEKRRLCLSGYIFMTSTVGHDPNAFHQLPGDYASENKHDENGTEVSVVERVKEEYLHPCCQKELEATRARTKLMTKLTAADITRHAMERRRNVFGPGQANDQHQHVHGTGCCSLTVDYPALSDLRERQGGGSRAMEVGMPVGSGDGDEQALLRQAEREQNGDEEEEESDDEWLQELEDGDDGGFQEVRRAEMVRRALEQAELQALGVGLHTYVAPARALKIVQRASCPLVMHCYDPYSPISAALDLELEVLAARYPGTRFLRTAFGANGGTRDGRGGQGSKVLRESLRVPAPAPTGEYRKSVVLAVKEGRLVDSCYDFGRRFGDVKEGRVYGEAVEQWLQHCRVLERASVKSSAAAFSVGY
Sbjct:    1 MHILHPHRAEKRRLCLSGYIFMTSTVGHDPNAFHQLPGDYASENKHDENGTEVSVVERVKEEYLHPCCQKELEATRARTKLMTKLTAADITRHAMERRRNVFGPGQANDQHQHVHGTGCCSLTVDYPALSDLRERQGGGSRAMEVGMPVGSGDGDEQALLRQAEREQNGDEEEEESDDEWLQELEDGDDGGFQEVRRAEMVRRALEQAELQALGVGLHTYVAPARALKIVQRASCPLVMHCYDPYSPISAALDLELEVLAARYPGTRFLRTAFGANGGTRDGRGGQGSKVLRESLRVPAPAPTGEYRKSVVLAVKEGRLVDSCYDFGRRFGDVKEGRVYGEAVEQWLQHCRVLERASVKSSAAAFSVGY 369          
BLAST of EWM26796.1 vs. NCBI_GenBank
Match: gi|553189691|ref|XP_005855052.1| (hypothetical protein NGA_2012310, partial [Nannochloropsis gaditana CCMP526] >gi|422294005|gb|EKU21305.1| hypothetical protein NGA_2012310, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 690.263 bits (1780), Expect = 0.000e+0
Identity = 335/339 (98.82%), Postives = 338/339 (99.71%), Query Frame = 0
Query:   20 IFMTSTVGHDPNAFHQLPGDYASENKHDENGTEVSVVERVKEEYLHPCCQKELEATRARTKLMTKLTAADITRHAMERRRNVFGPGQANDQHQHVHGTGCCSLTVDYPALSDLRERQGGGSRAMEVGMPVGSGDGDEQALLRQAEREQNGDEEEEESDDEWLQELEDGDDGGFQEVRRAEMVRRALEQAELQALGVGLHTYVAPARALKIVQRASCPLVMHCYDPYSPISAALDLELEVLAARYPGTRFLRTAFGANGGTRDGRGGQGSKVLRESLRVPAPAPTGEYRKSVVLAVKEGRLVDSCYDFGRRFGDVKEGRVYGEAVEQWLQHCRVLERASV 358
            IFMTSTVGHDPNAFHQLPGDYASENKHDENGTEVSVVERVKEEYLHPCCQKELEATRARTKLMTKLTAADITRHAMERRRNVFGP QANDQHQHVHGTGCCSLTVDYPALSDLRE+QGGGSRAMEVGMPVGSGDGDEQALLRQAEREQNGDEEEEESDDEWL+ELEDGDDGGFQE+RRAEMVRRALEQAELQALGVGLHTYVAPARALKIVQRASCPLVMHCYDPYSPISAALDLELEVLAARYPGTRFLRTAFGANGGTRDGRGGQGSKVLRESLRVPAPAPTGEYRKSVVLAVKEGRLVDSCYDFGRRFGDVKEGRVYGEAVEQWLQHCRVLERASV
Sbjct:    1 IFMTSTVGHDPNAFHQLPGDYASENKHDENGTEVSVVERVKEEYLHPCCQKELEATRARTKLMTKLTAADITRHAMERRRNVFGPEQANDQHQHVHGTGCCSLTVDYPALSDLREKQGGGSRAMEVGMPVGSGDGDEQALLRQAEREQNGDEEEEESDDEWLRELEDGDDGGFQEIRRAEMVRRALEQAELQALGVGLHTYVAPARALKIVQRASCPLVMHCYDPYSPISAALDLELEVLAARYPGTRFLRTAFGANGGTRDGRGGQGSKVLRESLRVPAPAPTGEYRKSVVLAVKEGRLVDSCYDFGRRFGDVKEGRVYGEAVEQWLQHCRVLERASV 339          
BLAST of EWM26796.1 vs. NCBI_GenBank
Match: gi|224005797|ref|XP_002291859.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220972378|gb|EED90710.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 91.6633 bits (226), Expect = 9.736e-17
Identity = 96/328 (29.27%), Postives = 136/328 (41.46%), Query Frame = 0
Query:   64 LHPCCQKELEATRARTKLMTKLTAADITRHAMERRRNVFGP----GQANDQHQH-----VHG----TGC-CSLTVD-----YPALSDLRERQGGGSRAMEVGMPV------GSGDGDEQALLRQAEREQNGDEEEEESDDEWLQE-LEDGDDGGFQEVRRAEMVRRALEQAELQALGVGLHTYVAPARALKIVQRASCP---------LVMHCYDPYSPISAALDLELEVLAARYPGTRFLRTAFGANGGTRDGRGGQGSKVLRESLRVPAPAPTGEYRKSVVLAVKEGRLV---DSCYDFGRRFGDVKEGRVYGEAVEQWLQHCRVL 353
            L  CCQ+E+E+ R R+ L T L   D    A ++RR    P    G  N  + +     +HG    +GC C    +     Y  L+D +  +G                  G+GD   Q        + +G +  +   D  L E +    +   Q  RRAE+   A     ++  G G+H  + P R        S            V+H YD YSP+S +LDL LE +A+RYPGT+FLR     +    +G GG   K  +  L              +V+A+KEGR+V       DF    GD    RV   AVEQWL+H  VL
Sbjct:   27 LDSCCQREIESNRKRSALETTLRKHDRVAKAEDQRRQQQQPSLLVGSNNGGYNYKAFNLIHGLSFGSGCRCCYDPNGDGGEYELLADAKRERGDDQLNNNNNNSSSNSGGEGTGDATNQQRNGTTNEQTDGSDSGDSEFDYLLDEDIPSSSEYDMQAQRRAELESMAHHYEVIRFHGYGVHRQMHPKRVFASAGYGSSTDRDRVTVKGSVVHLYDAYSPLSVSLDLCLEDMASRYPGTKFLRGLGVTSLLFAEGDGGD-QKWKKGDL-------------PMVVALKEGRVVAFSSGLRDFYNAGGDQHNERVEPRAVEQWLEHAGVL 340          
BLAST of EWM26796.1 vs. NCBI_GenBank
Match: gi|224005799|ref|XP_002291860.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220972379|gb|EED90711.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 72.7886 bits (177), Expect = 1.509e-10
Identity = 73/235 (31.06%), Postives = 107/235 (45.53%), Query Frame = 0
Query:  153 DGDEQALLRQAEREQNGDEEEE----------------ESDDEWL----QELEDGDDGGFQEVRRAEMVRRALEQAELQALGVGLHTYVAPARALK-----------IVQRASCPLVMHCYDPYSPISAALDLELEVLAARYPGTRFLRTAFGANGGTRDGRGGQGSKVLRESLRVPAPAPTGEYRKS---VVLAVKEGRLVDSCYDFGRRFGDVKEGRVYGEAVEQWLQHCRVL 353
            DG E  LL +A+RE     E E                +SDDE+     +++ +  +   Q  RRAE+  +A +   L+  G G+H  + P+R L            +V R +   V+H YD YSP+S +LDL LE +A+RYPGT+F+R              G G   L   L V     +  ++     ++LA+KEG +V       R F +   G+V   AVEQWL    VL
Sbjct:   91 DGREYELLAEAKREMQMTVEGESEAIIHLGYEMKDAGSDSDDEFDYLLDEDISNSSEIDMQAQRRAELEAKAEQYQILRQYGYGVHRQIHPSRVLASAGFGGSCEDGVVPRGA---VVHLYDAYSPLSVSLDLCLEGMASRYPGTKFVR--------------GLGKASL---LSVNDDDTSHRWKNGHLPMLLALKEGAVVSFSSGL-RDFNNA--GQVESGAVEQWLGIAGVL 302          
BLAST of EWM26796.1 vs. NCBI_GenBank
Match: gi|397634056|gb|EJK71258.1| (hypothetical protein THAOC_07321, partial [Thalassiosira oceanica])

HSP 1 Score: 70.8626 bits (172), Expect = 8.242e-10
Identity = 88/323 (27.24%), Postives = 127/323 (39.32%), Query Frame = 0
Query:   64 LHPCCQKELEATRARTKLMTKLTAADITRHAMERRRNVFGPGQANDQHQHVHGTGCCSLTVDYPALSDLRERQGGGSRAMEVGMPVGSGDGDEQALLRQAEREQNGDEEEEESD------------------------DEWLQELEDGDDGGFQEVRRAEMVRRALEQAELQALGVGLHTYVAPARALKIV------QRASC---PLVMHCYDPYSPISAALDLELEVLAARYPGTRFLRTAFGANGGTRDGRGGQGSKVLRESLRVPAPAPTGEYRKSVVLAVKEGRLVDSCYDFGRRFGDVKEGRVYGEAVEQWLQHCRVL 353
            L  CCQ+E+E+ R +  +   L   D    A + RR               H     S   +Y   + +R   G G R         + DG E  LL +A RE+     +E S+                        D  L E   G    +   RRAE+   A         G G+H  + P RAL  V      +R +       +H +D YSP+SA+LDL LE LA+++PGT+F+R+             G  +    E    PA    G+    V+LA++EGR+V   +  G R  +     V   AVE WL+   VL
Sbjct:   86 LDSCCQREIESNRKQNAVEAALRVHDRVAKAEDSRR---------------HQQTLSSNWREYNPANLVRGEFGDGCRCCYDP----NEDGGEYELLAEARRERTNARPDEPSELDGDGESKDPVGSASDSDSSDDEFDYLLDEDLPGAHSEYDNSRRAELESLAKRVEVANYHGYGVHRQLHPKRALSAVGYGFDQKRETFRPRGAALHLFDAYSPLSASLDLCLEDLASKHPGTKFVRSI------------GVSTLTYAEGSDSPADWRRGDL--PVLLALREGRVV--AWSSGLRDFECGRSEVDTRAVELWLESAGVL 373          
BLAST of EWM26796.1 vs. NCBI_GenBank
Match: gi|219118444|ref|XP_002179994.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408251|gb|EEC48185.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 66.2402 bits (160), Expect = 1.869e-8
Identity = 86/309 (27.83%), Postives = 131/309 (42.39%), Query Frame = 0
Query:   64 LHPCCQKELEATRARTKLMTKLTAADITRHAMERRRNVFGPGQANDQHQHVHGTGCC----SLTVDYPALSDLR-ERQGGGSRAMEVGMPVGSGDGDEQALLRQAEREQNGDEEEEESDDEWLQELEDGDDGGFQEVRRAEMVRRA-LEQAELQ-----ALGVGLHTYVAPARALKIVQRA------SCPLVMHCYDPYSPISAALDLELEVLAAR-YPGTRFLRTAFGANGGTRDGRGGQGSKVLRESLRVPA-PAPTGEYRKSVVLAVKEGRLVDSCYDFGRRFGDVKEGRVYGEAVEQWLQHCRVL 353
            L  CCQ+E E+ R    L   L   D+      RRR +           +  G  CC    S   +Y AL +LR  R+     A E           E   + + +++   D   + SDDE+   L++   G  +E++  E +RRA LE +        + G G H  + P R LK    A      S  +V+H  DP S  SA+LDL LE LA +   GT+FLR+            GG+ + ++   L     P    E     ++A+++G   + C    +   D ++G+V   AV +WL  C VL
Sbjct:   29 LDECCQREEESNRKGNALRRTLQRYDVVAEKERRRRQLVN-------TTNFSGCRCCYDPNSDGGEYLALIELRTSRKQKEEDAEET----------EHQAMEEKKKDDTVDVASDPSDDEFDYLLDEELPGQGEELKALEDLRRAELEMSIFSREVALSHGYGTHRQMHPTRVLKAAGLAPGTRDPSPAVVLHLVDPDSIASASLDLYLEELAQKEAKGTKFLRS------------GGRSTLLMDAELATKVLPRLKPEKDMPAMVAIRDGVATNVCPRL-QGLTD-RDGQVVTRAVFEWLDRCGVL 306          
BLAST of EWM26796.1 vs. NCBI_GenBank
Match: gi|1210529495|dbj|GAX11837.1| (hypothetical protein FisN_20Lh106 [Fistulifera solaris])

HSP 1 Score: 65.4698 bits (158), Expect = 3.398e-8
Identity = 84/291 (28.87%), Postives = 116/291 (39.86%), Query Frame = 0
Query:   64 LHPCCQKELEATRARTKLMTKLTAADITRHAMERRRNVFGPGQANDQHQHVHGTGCCSLTVDYPALSDLRERQGGGSRAMEVGMPVGSGDGDEQALLRQAEREQNGDEEEEESDDEWLQELEDGDDGGFQEVRRAEMVRRALEQAELQALGVGLHTYVAPARALKIVQRASCPLVMHCYDPYSPISAALDLELE-VLAARYPGTRFLRTAFGANGGTRDGRGGQGSKVLRESLRVPAPAPTGEYRKSVVLAVKEGRLVDSCYDFGRRFGDVKEGRVYGEAVEQWLQHCRVL 353
            L  CCQ+E+E  R    LM  L+  D+      +RRN+  P              CC               Q GG     + +       DE       E ++   EEEE+  D  L++ E  +D    E RRAE+    L+    +  G G    + P+R L +  RA    V+H +D  SP SA+LDL  E  LA +  GT FLR+         DGR    S +L          P   +    ++A+K G ++     F     D   G V G AVE WL  C VL
Sbjct:   28 LESCCQREIETNRKGNALMATLSKHDVVAARERQRRNLITPEDCR----------CC-----------FDPNQDGGEYWALIQLKQQLRKVDEIENDEIEEIKKEDGEEEEDEFDYLLEDSELPED----EFRRAELEWNMLQTEIRRFHGYGSVRQMHPSRVLGVALRAPV-CVLHLFDTDSPASASLDLYFERTLAPKTMGTLFLRS---------DGR----STLLLNPKHFSDIDP--HHNLPALIALKNGAIIQQNLQFQGLIDDT--GAVIGTAVETWLDRCSVL 275          
BLAST of EWM26796.1 vs. NCBI_GenBank
Match: gi|299115794|emb|CBN74357.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 61.6178 bits (148), Expect = 6.416e-7
Identity = 77/256 (30.08%), Postives = 110/256 (42.97%), Query Frame = 0
Query:   34 HQLPGDYASENKHDENGTEVSVVERVKE--EYLHPCCQKELEATRARTKLMTKLTAADITRHAMERRRNVFGPGQANDQHQHVHGTGCCSLTVDYPALSDLR----------ERQGGGSRAMEVGMPVGSGDGDEQALLRQAEREQNGDEEEEESDDEWLQELEDGDDGGFQEVRRAEMVRRALEQAELQALGVGLHTYVAPARALKIVQRA---SCPLVMHCYDPYSPISAALDLELEVLAARYPGTRFLRTAFG 274
            H   GD    + H  +G +V   E   E  E  HPCCQK+ EA     KL + L   D+++ A   R+  F  G A        G        DYPAL + R           R  G +R        G GDG  +     +  + + D+++++ DD+    L+D +     ++R   M   A     L+ALG GLH  V P   ++   R       +V+H YD  S + A+LDL LE  A  Y GTRF+R   G
Sbjct:    6 HSHCGDSTCNHDHGTSG-QVDGEEDFHEFLEETHPCCQKDSEAKARALKLRSALDKVDLSQIAERARKAAFSSGLAGPPASRSGGG-------DYPALREARAAAAAAAAKDSRNDGAARG------AGYGDGIVEGHNNHSRVDSDDDDDDDDDDDDLDYLLDDPEITRMAQMRVEAMHADATRLQNLRALGFGLHIEV-PESGVEEASRGQFRGAGVVLHLYDADSELGASLDLLLEAKAGSYMGTRFVRCRLG 246          
The following BLAST results are available for this feature:
BLAST of EWM26796.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 8
Match NameE-valueIdentityDescription
gi|585108887|gb|EWM26796.1|0.000e+0100.00hypothetical protein Naga_100018g60 [Nannochlorops... [more]
gi|553189691|ref|XP_005855052.1|0.000e+098.82hypothetical protein NGA_2012310, partial [Nannoch... [more]
gi|224005797|ref|XP_002291859.1|9.736e-1729.27predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|224005799|ref|XP_002291860.1|1.509e-1031.06predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|397634056|gb|EJK71258.1|8.242e-1027.24hypothetical protein THAOC_07321, partial [Thalass... [more]
gi|219118444|ref|XP_002179994.1|1.869e-827.83predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210529495|dbj|GAX11837.1|3.398e-828.87hypothetical protein FisN_20Lh106 [Fistulifera sol... [more]
gi|299115794|emb|CBN74357.1|6.416e-730.08conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3849rna3849Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications