rna3847, rna3847 (mRNA) Nannochloropsis gaditana

Overview
Namerna3847
Unique Namerna3847
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2565
Alignment locationCM002462.1:202505..203577 -

Link to JBrowse

Properties
Property NameValue
ProductComplex 1 LYR protein
Orig transcript idgnl|cribi|Naga_100018g62.2783.mrna
Orig protein idgnl|cribi|Naga_100018g62.2783
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:202505..203577 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100018g62gene3702Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3847rna3847-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26803.1cds3838Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3847 ID=rna3847|Name=rna3847|organism=Nannochloropsis gaditana|type=mRNA|length=2565bp
GTAGGCCGCTGCGTCCATCAATGCCTCGAATTCTGCCTTGTCTGTCACCT
TGAACTTCGTGAACCACGCGTCTGTTTCCGCGGCGTTGTTCACATTCCCG
GGGTCCTCGGAAAGGGACGCATTCGACTCGATGATCTCTCCTGAGACGGG
CGCGTACACGTCGCTGGCGGCCTTGACAGACTCGACGGAGCCAAAGGGGT
CCCTGGAATAGGGGGGTCGAGGGGGGAGACGCGTTGTATTATATATATGC
GGGCTTCAAAGCACCATATTCATGGCGTGTACGTTGATTCGACATGTGGC
GTGTCCAAACGTGTAAAAAGGAAAAGGAAATGCCAGGTAAGCACCCGGAT
AGAAGCGATGGGGTCGCTGAGCGGTCGAAAGATCCTCTTCACACCGCCGT
GCTTACCCTTTACTGAAGGATGCCCCTACTTCCGGCAAGTCCACGTAAAC
CACGTCCCCCAGGGCCTTGGCCGCGAAGTCAGTAATGCCCACAGTGGCGA
TGTCCCCATCCAGCTTCACCCACTCGTGTGACGTTGCGTAGCGTGTGGTT
GCTATCGTACGGCGCAGTGTCGGCTGAAAGACGGTTGACTGGACTCAGAC
AAAGAACAGATGTATGATCGTGGGACATCGAGGAAGGTAAATCAGTAGCA
GATAACGATCGCTTCAACGCATGGCGATCAAGGCGGATTTGTTTCCATGT
AATATGCACAGAATGGGACGAGGCGGCTCACAGAAGGGATTGGCACGTGT
GCTTGATATCATGAAAAGGGAGCTCAAAATCTGAAAACTTACGGAGCAGG
CGATGCGACGAGCTACGTGACGGGTGGCCGTAGCAAGCATTGTGAAATTT
TTTGGAGAGAATGCACGAAAAAGTGCGTCGAAGATCCTGAACGATTTGTG
GTAGGAATACGACATCGTGATATGAGACTGAACATAAGCGAGAGAGGAGC
ACTGCTTCTTTCGTGAGGATCGGGCGACATGAACCACTTTCGTCAGTAAT
AAGTACTGGTGCAGTCCTGTAGTATGAACAGGTGAGGGGTAGATTTTCGA
GAGACCGATGAACAGCCAATTTGTGTGCATTTGCTGAAGTCCTAGAGGCA
CCTTATCGCCGGTCTCATTGCACGCATCGAGCTCGAGAAAAGACTCGTCC
CCACCCCATCCGCCACTCCTTCGCATGACCTCGGACATCACGTCTCCCTG
CCTATCAAACGCCACACGCGTCGCGCCCGTGGCGTGCAGGTACTGGGTAC
CAAGCAATCAGGTTGCACAGCCAGAGAAAGTGACCGCCGGGGGGGGGGAA
GATCGTATGGTAAAGAGCGAGCCAACGGGTTCGGACCACCCCCACGCCAA
ATTTCCTCCGGCCGTGGGCAGGGGGGAATTATTTGGATTGCTGGTGTCCT
GATGATGGATGCTCGGCTTGGTGGTTGATATGATGCGTAGACGCTTTTTA
AGATTGTCTCGTGGGGCAGGATGTTGCTTTGTTTCGGGCACTGGCACTTG
GATTATAATGCCCCGGTCGTTTGCCAATGCAAGTCAGTCAAGGACATCAT
TAACAGCATGATTTTTTTTTATCGCCTTTATTATCCCGCACTCCTAGACC
CTTCATTTACATCTTAACATCTAGAAATGGCCCGCCAAAAGAATATCTTC
TCTGTGATGGCCATGGTCACTGTCGGCGCGTCCGCGTTTATTCTGCCCCT
GAAGCAACCCCTCAACGGCCCAGCCCTATGTGTTCAACGTGCCTCTTCTA
CCGCCCGCTTTGCGGTTAGTCAAGACGAATTGAAGAAGCAAGTGGGCTAC
AAATCGGTGGACGACTACGTGCAGAGTGGAATGGTTGTGGGTTTGGGCAC
TGGCTCCACTGCCGCTTTTGCTGTGGAGCGATTGGGCATGAAGCTTAAAG
CAGACCCGGCCCTGAATTTGGTCAAGGGACGTGGAGGGGCCTTATTGCGC
GAGAAGATGGTGGAGGTGTGCGCCAAGAAGTTCATCGTTATCGTGGATGA
CAGCAAAATGGTTCCGGGATTGGGCGTGACGGGAGCCATGCCCGTGGAAA
TTACCCCTTTCTGCCATGAACACACTCAACGCACGATTCTGGAGCTCCCG
GGGGTCAAGGGCGCAGCCACAGGGAAGCTGCGCATGGACGGCGACAAGCC
CTACGTTACGGACAACGACAACTACATTGTGGATTTGTACTACACGGATC
CGATCGCGGACGTGAAAGCGGTGGCGCGGGCCTTGGAGGGAGTGGTGGGG
GTGGTGGAGCACGGTTTCTTCTTGGACATGACCACCGCGGTGATTGTGGC
TGGCAAAGAGGGAATCGAGGTCATCAACAAGAAGTAAGGAGGGGAAAGGA
TACTATGGGGGATATGACGAAGGCTTGATTGAGGGCCTGAAGCCCGAAAA
AGGGGTGAAAGGGCGAAACTTTGCGAGAAAGGAGAAAGTGATGCATGTAA
TGACGTGGAACGGCGGCATCTCGCAGGCCACCTCTCTTCTTGCGATCTTG
TTCACCGCACACGATGAATGGAAGCAAAACAAAGCGCTAGAAGCGATCAT
TGGCATCAATGTTGG
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protein sequence of rna3847

>rna3847-protein ID=rna3847-protein|Name=rna3847|organism=Nannochloropsis gaditana|type=polypeptide|length=162bp
MAWRQCQTFILPRASHINNAELQNKCVGLNMPHLSVPASATSAAVLHLYR
RIIKNAKVFPSKGRDRMLKEIREEFRLNAKETDPEKVKHHRSMAIQGLSQ
LQAYTGLEDSDMDWSVTMEQAPLGGLSEEKVEEKLRRVPQMAMTSGKDVA
DETGQENDDRRK
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mRNA from alignment at CM002462.1:202505..203577-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3847 ID=rna3847|Name=rna3847|organism=Nannochloropsis gaditana|type=mRNA|length=1073bp|location=Sequence derived from alignment at CM002462.1:202505..203577- (Nannochloropsis gaditana)
ATGGCTTGGCGTCAATGTCAAAGTAATGTCCCCTTGCCTGTCGTACGGAT
CGTATTTCTGTGTGAACTCAAGACAACGCCTCGATTGATGGAGTACCAAT
GGTAAGCACTGAAATAATTGCATTCTAGATCGCCTTGGCACGTTGCATAC
AAACGAGACTCCTCCTTGACCCAAGTTCATCCTTTCAGAGATGTAGCGCG
ATTAACGATTGTTATTCTCAACGTGTGCGAGTTTTGAGGGACGAGTACTT
CAAACGACGTGTCTCCTTTGTATTTCGTGTTTCACAATACTTCCAATCTC
ACCCAGGTGAATTGCAGGATCACACTATAAAGAGTGCTCGCTTTGGTCAC
TCGACCTCGGGTAACCTCCCCACCCCTGCAAAGCTTTCATTCTGCCACGG
GCTTCGCACATCAATAACGCAGAACTACAGAATAAGTGCGTCGGTCTCAA
CATGCCGCATCTTTCTGTGCCAGCATCAGCCACAAGTGCTGCGGTTCTCC
ACCTTTACCGGCGTATTATCAAGAACGCCAAGGTGTTTCCTAGTAAAGGT
CGCGATCGCATGCTCAAGGAAATCAGGGAAGGTAATGTTCCGAATACATC
CTTTCCATTTTTCCTCGACCAAGGGCGAGACTTTGATAAAAATGTTGAAG
ACTAAGTTATGTGTAGACGCGGTGTCTCTTCCATCCTTTTCCCACTGGGG
ATGCTCGTGCCAAGACTGAATGATTCACGGAATGCCCCCCCGAGCATGAA
AAGAAAAGATTAGAATGCTTAGATCTCTTTTGCCACCGGAACTTCACGCC
ACAGAGTTTCGCCTCAATGCCAAAGAAACCGACCCGGAGAAGGTTAAGCA
CCACAGGAGTATGGCAATCCAGGGACTGAGTCAGTTGCAGGCCTACACGG
GATTGGAGGACTCGGACATGGACTGGAGCGTCACAATGGAGCAAGCGCCA
TTGGGGGGGCTATCGGAGGAAAAAGTGGAGGAGAAATTGCGTCGCGTCCC
ACAAATGGCAATGACCTCCGGGAAGGACGTCGCAGACGAAACAGGGCAAG
AAAACGATGACAGAAGGAAGTAG
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Coding sequence (CDS) from alignment at CM002462.1:202505..203577-

>rna3847 ID=rna3847|Name=rna3847|organism=Nannochloropsis gaditana|type=CDS|length=1467bp|location=Sequence derived from alignment at CM002462.1:202505..203577- (Nannochloropsis gaditana)
AGTTTCGCCTCAATGCCAAAGAAACCGACCCGGAGAAGGTTAAGCACCAC
AGGAGTATGGCAATCCAGGGACTGAGTCAGTTGCAGGCCTACACGGGATT
GGAGGACTCGGACATGGACTGGAGCGTCACAATGGAGCAAGCGCCATTGG
GGGGGCTATCGGAGGAAAAAGTGGAGGAGAAATTGCGTCGCGTCCCACAA
ATGGCAATGACCTCCGGGAAGGACGTCGCAGACGAAACAGGGCAAGAAAA
CGATGACAGAAGGAAGTAGCTTTCATTCTGCCACGGGCTTCGCACATCAA
TAACGCAGAACTACAGAATAAGTGCGTCGGTCTCAACATGCCGCATCTTT
CTGTGCCAGCATCAGCCACAAGTGCTGCGGTTCTCCACCTTTACCGGCGT
ATTATCAAGAACGCCAAGGTGTTTCCTAGTAAAGGTCGCGATCGCATGCT
CAAGGAAATCAGGGAAGATGGCTTGGCGTCAATGTCAAAAGTTTCGCCTC
AATGCCAAAGAAACCGACCCGGAGAAGGTTAAGCACCACAGGAGTATGGC
AATCCAGGGACTGAGTCAGTTGCAGGCCTACACGGGATTGGAGGACTCGG
ACATGGACTGGAGCGTCACAATGGAGCAAGCGCCATTGGGGGGGCTATCG
GAGGAAAAAGTGGAGGAGAAATTGCGTCGCGTCCCACAAATGGCAATGAC
CTCCGGGAAGGACGTCGCAGACGAAACAGGGCAAGAAAACGATGACAGAA
GGAAGTAGCTTTCATTCTGCCACGGGCTTCGCACATCAATAACGCAGAAC
TACAGAATAAGTGCGTCGGTCTCAACATGCCGCATCTTTCTGTGCCAGCA
TCAGCCACAAGTGCTGCGGTTCTCCACCTTTACCGGCGTATTATCAAGAA
CGCCAAGGTGTTTCCTAGTAAAGGTCGCGATCGCATGCTCAAGGAAATCA
GGGAAGATGGCTTGGCGTCAATGTCAAAAGTTTCGCCTCAATGCCAAAGA
AACCGACCCGGAGAAGGTTAAGCACCACAGGAGTATGGCAATCCAGGGAC
TGAGTCAGTTGCAGGCCTACACGGGATTGGAGGACTCGGACATGGACTGG
AGCGTCACAATGGAGCAAGCGCCATTGGGGGGGCTATCGGAGGAAAAAGT
GGAGGAGAAATTGCGTCGCGTCCCACAAATGGCAATGACCTCCGGGAAGG
ACGTCGCAGACGAAACAGGGCAAGAAAACGATGACAGAAGGAAGTAGCTT
TCATTCTGCCACGGGCTTCGCACATCAATAACGCAGAACTACAGAATAAG
TGCGTCGGTCTCAACATGCCGCATCTTTCTGTGCCAGCATCAGCCACAAG
TGCTGCGGTTCTCCACCTTTACCGGCGTATTATCAAGAACGCCAAGGTGT
TTCCTAGTAAAGGTCGCGATCGCATGCTCAAGGAAATCAGGGAAGATGGC
TTGGCGTCAATGTCAAA
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Synonyms
Publications