EWM26803.1, cds3838 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26803.1 vs. NCBI_GenBank
Match: gi|585108894|gb|EWM26803.1| (Complex 1 LYR protein [Nannochloropsis gaditana]) HSP 1 Score: 340.887 bits (873), Expect = 1.062e-118 Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0 Query: 1 MAWRQCQTFILPRASHINNAELQNKCVGLNMPHLSVPASATSAAVLHLYRRIIKNAKVFPSKGRDRMLKEIREEFRLNAKETDPEKVKHHRSMAIQGLSQLQAYTGLEDSDMDWSVTMEQAPLGGLSEEKVEEKLRRVPQMAMTSGKDVADETGQENDDRRK 162 MAWRQCQTFILPRASHINNAELQNKCVGLNMPHLSVPASATSAAVLHLYRRIIKNAKVFPSKGRDRMLKEIREEFRLNAKETDPEKVKHHRSMAIQGLSQLQAYTGLEDSDMDWSVTMEQAPLGGLSEEKVEEKLRRVPQMAMTSGKDVADETGQENDDRRK Sbjct: 1 MAWRQCQTFILPRASHINNAELQNKCVGLNMPHLSVPASATSAAVLHLYRRIIKNAKVFPSKGRDRMLKEIREEFRLNAKETDPEKVKHHRSMAIQGLSQLQAYTGLEDSDMDWSVTMEQAPLGGLSEEKVEEKLRRVPQMAMTSGKDVADETGQENDDRRK 162
BLAST of EWM26803.1 vs. NCBI_GenBank
Match: gi|553183961|ref|XP_005854002.1| (hypothetical protein NGA_0419902 [Nannochloropsis gaditana CCMP526] >gi|422295058|gb|EKU22357.1| hypothetical protein NGA_0419902 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 272.322 bits (695), Expect = 4.176e-92 Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 0 Query: 31 MPHLSVPASATSAAVLHLYRRIIKNAKVFPSKGRDRMLKEIREEFRLNAKETDPEKVKHHRSMAIQGLSQLQAYTGLEDSDMDWSVTMEQAPLGGLSEEKVEEKLRRVPQMAMTSGKDVADETGQENDDRRK 162 MPHLSVPASATSAAVLHLYRRIIKNAKVFPSKGRDRMLKEIREEFRLNAKE+DPEKVKHHRSMAIQGLSQLQAYTGLEDSDMDWSVTMEQAPLGGLSEEKVEEKLRRVPQMAMTSGKDVADETGQENDDRRK Sbjct: 1 MPHLSVPASATSAAVLHLYRRIIKNAKVFPSKGRDRMLKEIREEFRLNAKESDPEKVKHHRSMAIQGLSQLQAYTGLEDSDMDWSVTMEQAPLGGLSEEKVEEKLRRVPQMAMTSGKDVADETGQENDDRRK 132
BLAST of EWM26803.1 vs. NCBI_GenBank
Match: gi|298712513|emb|CBJ26781.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 107.842 bits (268), Expect = 1.258e-27 Identity = 50/87 (57.47%), Postives = 66/87 (75.86%), Query Frame = 0 Query: 43 AAVLHLYRRIIKNAKVFPSKGRDRMLKEIREEFRLNAKETDPEKVKHHRSMAIQGLSQLQAYTGLEDSDMDWSVTMEQAPLGGLSEE 129 A +L LYR II+NA+V+PSK RDR+LKEIR EFR NA E+DP KV R +A++GL QL YT ++ S +D SVT+EQ PLGG +++ Sbjct: 4 AQMLSLYRHIIRNARVYPSKSRDRVLKEIRLEFRKNATESDPVKVDEQRQLAMKGLQQLMVYTKMDTSGLDMSVTLEQNPLGGPTQQ 90
BLAST of EWM26803.1 vs. NCBI_GenBank
Match: gi|1004141367|gb|KXZ49360.1| (hypothetical protein GPECTOR_22g954 [Gonium pectorale]) HSP 1 Score: 78.5666 bits (192), Expect = 4.011e-16 Identity = 36/67 (53.73%), Postives = 51/67 (76.12%), Query Frame = 0 Query: 39 SATSAAVLHLYRRIIKNAKVFPSKGRDRMLKEIREEFRLNAKETDPEKVKHHRSMAIQGLSQLQAYT 105 SA + +VL LYR+I+K AK FPS+ RD +++EI+ EFR N T+PE+V+H R++A +GLS LQAY Sbjct: 2 SANAPSVLSLYRQILKAAKYFPSRKRDNIIREIKAEFRANKALTEPERVQHCRTLAERGLSDLQAYV 68
BLAST of EWM26803.1 vs. NCBI_GenBank
Match: gi|159471301|ref|XP_001693795.1| (predicted protein [Chlamydomonas reinhardtii] >gi|158283298|gb|EDP09049.1| predicted protein [Chlamydomonas reinhardtii]) HSP 1 Score: 76.6406 bits (187), Expect = 2.868e-15 Identity = 35/68 (51.47%), Postives = 49/68 (72.06%), Query Frame = 0 Query: 38 ASATSAAVLHLYRRIIKNAKVFPSKGRDRMLKEIREEFRLNAKETDPEKVKHHRSMAIQGLSQLQAYT 105 ++A+ VLHLYR I+K AK FPSK R +++EI+EEFR N +DP+++ H R +A +GLS LQAY Sbjct: 2 SAASPPGVLHLYRHILKAAKYFPSKKRTSIIREIKEEFRSNKTLSDPDRIAHCRVLAERGLSDLQAYV 69
BLAST of EWM26803.1 vs. NCBI_GenBank
Match: gi|673034452|ref|XP_008871187.1| (hypothetical protein H310_07567 [Aphanomyces invadans] >gi|574473158|gb|ETW00162.1| hypothetical protein H310_07567 [Aphanomyces invadans]) HSP 1 Score: 75.8702 bits (185), Expect = 4.264e-15 Identity = 35/85 (41.18%), Postives = 54/85 (63.53%), Query Frame = 0 Query: 40 ATSAAVLHLYRRIIKNAKVFPSKGRDRMLKEIREEFRLNAKETDPEKVKHHRSMAIQGLSQLQAYTGLEDSDMDWSVTMEQAPLG 124 + S V +YRR+++ AK FPS RD+++++I+ EF N TDP K+K ++AI+G+ QL Y L+ + WSV ME+ P G Sbjct: 2 SASPTVPQIYRRVLQLAKKFPSIKRDQLVEDIKAEFHDNKVLTDPVKIKEKVNIAIKGIQQLNQYVSLDPNAQHWSVDMEKDPFG 86
BLAST of EWM26803.1 vs. NCBI_GenBank
Match: gi|1210515569|dbj|GAX25462.1| (hypothetical protein FisN_12Lu003 [Fistulifera solaris]) HSP 1 Score: 75.485 bits (184), Expect = 7.481e-15 Identity = 35/89 (39.33%), Postives = 57/89 (64.04%), Query Frame = 0 Query: 38 ASATSAAVLHLYRRIIKNAKVFPSKGRDRMLKEIREEFRLNAKETDPEKVKHHRSMAIQGLSQLQAYT---GLEDSDMDWSVTMEQAPL 123 A++T ++LHLYR+++++ + FPS+ RD + + IRE+FR E DP K++ S+AI+GL QLQ + S W+V +EQ P+ Sbjct: 3 ATSTQQSLLHLYRKLLRSCQTFPSRKRDSIHQAIREDFRFYQNEQDPHKIEQQISIAIKGLDQLQQFNVSRMTSTSSSSWNVHLEQNPM 91
BLAST of EWM26803.1 vs. NCBI_GenBank
Match: gi|676384107|ref|XP_009035332.1| (hypothetical protein AURANDRAFT_62461 [Aureococcus anophagefferens] >gi|323454678|gb|EGB10548.1| hypothetical protein AURANDRAFT_62461 [Aureococcus anophagefferens]) HSP 1 Score: 73.9442 bits (180), Expect = 5.452e-14 Identity = 42/91 (46.15%), Postives = 54/91 (59.34%), Query Frame = 0 Query: 35 SVPAS-ATSAAVLHLYRRIIKNAKVFPSKGRDRMLKEIREEFRLNAK-ETDPEKVKHHRSMAIQGLSQLQAYTGLEDSDMDWSVTMEQAPL 123 +VPA AT +L LYRRII A FPSK RD++ EIR+EFR NA E + ++A Q L QLQAYT ++ D W + ME P+ Sbjct: 32 AVPAGQATRPHILWLYRRIIFAAARFPSKNRDKVYAEIRDEFRRNAALEPGSDAAIEQVALAQQSLRQLQAYTNMQRDDGSWELNMESNPM 122
BLAST of EWM26803.1 vs. NCBI_GenBank
Match: gi|255075235|ref|XP_002501292.1| (predicted protein [Micromonas commoda] >gi|226516556|gb|ACO62550.1| predicted protein [Micromonas commoda]) HSP 1 Score: 70.8626 bits (172), Expect = 2.972e-13 Identity = 35/84 (41.67%), Postives = 52/84 (61.90%), Query Frame = 0 Query: 42 SAAVLHLYRRIIKNAKVFPSKGRDRMLKEIREEFRLNAKETDPEKVKHHRSMAIQGLSQLQAYTGLEDSDMDWSVTMEQAPLGG 125 S + L LYR I+K AK FPSK R +++EI+ EFR NA TD V+ ++A GL +++A+TGL+ W V++ + P G Sbjct: 2 SGSTLRLYRHILKAAKTFPSKNRAGLIEEIKTEFRENAGATDAGDVQKKLALARDGLDRMRAFTGLDQGASKWDVSL-KGPYDG 84
BLAST of EWM26803.1 vs. NCBI_GenBank
Match: gi|698796244|ref|XP_009831151.1| (hypothetical protein H257_07358 [Aphanomyces astaci] >gi|574113821|gb|ETV79310.1| hypothetical protein H257_07358 [Aphanomyces astaci]) HSP 1 Score: 70.4774 bits (171), Expect = 6.525e-13 Identity = 31/85 (36.47%), Postives = 53/85 (62.35%), Query Frame = 0 Query: 40 ATSAAVLHLYRRIIKNAKVFPSKGRDRMLKEIREEFRLNAKETDPEKVKHHRSMAIQGLSQLQAYTGLEDSDMDWSVTMEQAPLG 124 ++S V +YRR+++ A FPS + +++++I+ EF N TDP K+K ++AI+G+ QL Y L+ + WSV M++ P G Sbjct: 2 SSSPTVPQIYRRVLQLANKFPSIKQKQLVQDIKLEFHENKALTDPAKIKEKINIAIKGIQQLNQYVALDPNAQSWSVDMDKDPFG 86 The following BLAST results are available for this feature:
BLAST of EWM26803.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10 Position : 0 Zoom : x 1
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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