EWM26803.1, cds3838 (CDS) Nannochloropsis gaditana

Overview
NameEWM26803.1
Unique Namecds3838
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:203556..203577 -
Alignment locationCM002462.1:202997..203194 -
Alignment locationCM002462.1:202505..202773 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26803.1
ProductComplex 1 LYR protein
Orig transcript idgnl|cribi|Naga_100018g62.2783.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:203556..203577 -
CM002462.1supercontigCM002462.1:202997..203194 -
CM002462.1supercontigCM002462.1:202505..202773 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR008011Complex1_LYR
Homology
BLAST of EWM26803.1 vs. NCBI_GenBank
Match: gi|585108894|gb|EWM26803.1| (Complex 1 LYR protein [Nannochloropsis gaditana])

HSP 1 Score: 340.887 bits (873), Expect = 1.062e-118
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0
Query:    1 MAWRQCQTFILPRASHINNAELQNKCVGLNMPHLSVPASATSAAVLHLYRRIIKNAKVFPSKGRDRMLKEIREEFRLNAKETDPEKVKHHRSMAIQGLSQLQAYTGLEDSDMDWSVTMEQAPLGGLSEEKVEEKLRRVPQMAMTSGKDVADETGQENDDRRK 162
            MAWRQCQTFILPRASHINNAELQNKCVGLNMPHLSVPASATSAAVLHLYRRIIKNAKVFPSKGRDRMLKEIREEFRLNAKETDPEKVKHHRSMAIQGLSQLQAYTGLEDSDMDWSVTMEQAPLGGLSEEKVEEKLRRVPQMAMTSGKDVADETGQENDDRRK
Sbjct:    1 MAWRQCQTFILPRASHINNAELQNKCVGLNMPHLSVPASATSAAVLHLYRRIIKNAKVFPSKGRDRMLKEIREEFRLNAKETDPEKVKHHRSMAIQGLSQLQAYTGLEDSDMDWSVTMEQAPLGGLSEEKVEEKLRRVPQMAMTSGKDVADETGQENDDRRK 162          
BLAST of EWM26803.1 vs. NCBI_GenBank
Match: gi|553183961|ref|XP_005854002.1| (hypothetical protein NGA_0419902 [Nannochloropsis gaditana CCMP526] >gi|422295058|gb|EKU22357.1| hypothetical protein NGA_0419902 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 272.322 bits (695), Expect = 4.176e-92
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 0
Query:   31 MPHLSVPASATSAAVLHLYRRIIKNAKVFPSKGRDRMLKEIREEFRLNAKETDPEKVKHHRSMAIQGLSQLQAYTGLEDSDMDWSVTMEQAPLGGLSEEKVEEKLRRVPQMAMTSGKDVADETGQENDDRRK 162
            MPHLSVPASATSAAVLHLYRRIIKNAKVFPSKGRDRMLKEIREEFRLNAKE+DPEKVKHHRSMAIQGLSQLQAYTGLEDSDMDWSVTMEQAPLGGLSEEKVEEKLRRVPQMAMTSGKDVADETGQENDDRRK
Sbjct:    1 MPHLSVPASATSAAVLHLYRRIIKNAKVFPSKGRDRMLKEIREEFRLNAKESDPEKVKHHRSMAIQGLSQLQAYTGLEDSDMDWSVTMEQAPLGGLSEEKVEEKLRRVPQMAMTSGKDVADETGQENDDRRK 132          
BLAST of EWM26803.1 vs. NCBI_GenBank
Match: gi|298712513|emb|CBJ26781.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 107.842 bits (268), Expect = 1.258e-27
Identity = 50/87 (57.47%), Postives = 66/87 (75.86%), Query Frame = 0
Query:   43 AAVLHLYRRIIKNAKVFPSKGRDRMLKEIREEFRLNAKETDPEKVKHHRSMAIQGLSQLQAYTGLEDSDMDWSVTMEQAPLGGLSEE 129
            A +L LYR II+NA+V+PSK RDR+LKEIR EFR NA E+DP KV   R +A++GL QL  YT ++ S +D SVT+EQ PLGG +++
Sbjct:    4 AQMLSLYRHIIRNARVYPSKSRDRVLKEIRLEFRKNATESDPVKVDEQRQLAMKGLQQLMVYTKMDTSGLDMSVTLEQNPLGGPTQQ 90          
BLAST of EWM26803.1 vs. NCBI_GenBank
Match: gi|1004141367|gb|KXZ49360.1| (hypothetical protein GPECTOR_22g954 [Gonium pectorale])

HSP 1 Score: 78.5666 bits (192), Expect = 4.011e-16
Identity = 36/67 (53.73%), Postives = 51/67 (76.12%), Query Frame = 0
Query:   39 SATSAAVLHLYRRIIKNAKVFPSKGRDRMLKEIREEFRLNAKETDPEKVKHHRSMAIQGLSQLQAYT 105
            SA + +VL LYR+I+K AK FPS+ RD +++EI+ EFR N   T+PE+V+H R++A +GLS LQAY 
Sbjct:    2 SANAPSVLSLYRQILKAAKYFPSRKRDNIIREIKAEFRANKALTEPERVQHCRTLAERGLSDLQAYV 68          
BLAST of EWM26803.1 vs. NCBI_GenBank
Match: gi|159471301|ref|XP_001693795.1| (predicted protein [Chlamydomonas reinhardtii] >gi|158283298|gb|EDP09049.1| predicted protein [Chlamydomonas reinhardtii])

HSP 1 Score: 76.6406 bits (187), Expect = 2.868e-15
Identity = 35/68 (51.47%), Postives = 49/68 (72.06%), Query Frame = 0
Query:   38 ASATSAAVLHLYRRIIKNAKVFPSKGRDRMLKEIREEFRLNAKETDPEKVKHHRSMAIQGLSQLQAYT 105
            ++A+   VLHLYR I+K AK FPSK R  +++EI+EEFR N   +DP+++ H R +A +GLS LQAY 
Sbjct:    2 SAASPPGVLHLYRHILKAAKYFPSKKRTSIIREIKEEFRSNKTLSDPDRIAHCRVLAERGLSDLQAYV 69          
BLAST of EWM26803.1 vs. NCBI_GenBank
Match: gi|673034452|ref|XP_008871187.1| (hypothetical protein H310_07567 [Aphanomyces invadans] >gi|574473158|gb|ETW00162.1| hypothetical protein H310_07567 [Aphanomyces invadans])

HSP 1 Score: 75.8702 bits (185), Expect = 4.264e-15
Identity = 35/85 (41.18%), Postives = 54/85 (63.53%), Query Frame = 0
Query:   40 ATSAAVLHLYRRIIKNAKVFPSKGRDRMLKEIREEFRLNAKETDPEKVKHHRSMAIQGLSQLQAYTGLEDSDMDWSVTMEQAPLG 124
            + S  V  +YRR+++ AK FPS  RD+++++I+ EF  N   TDP K+K   ++AI+G+ QL  Y  L+ +   WSV ME+ P G
Sbjct:    2 SASPTVPQIYRRVLQLAKKFPSIKRDQLVEDIKAEFHDNKVLTDPVKIKEKVNIAIKGIQQLNQYVSLDPNAQHWSVDMEKDPFG 86          
BLAST of EWM26803.1 vs. NCBI_GenBank
Match: gi|1210515569|dbj|GAX25462.1| (hypothetical protein FisN_12Lu003 [Fistulifera solaris])

HSP 1 Score: 75.485 bits (184), Expect = 7.481e-15
Identity = 35/89 (39.33%), Postives = 57/89 (64.04%), Query Frame = 0
Query:   38 ASATSAAVLHLYRRIIKNAKVFPSKGRDRMLKEIREEFRLNAKETDPEKVKHHRSMAIQGLSQLQAYT---GLEDSDMDWSVTMEQAPL 123
            A++T  ++LHLYR+++++ + FPS+ RD + + IRE+FR    E DP K++   S+AI+GL QLQ +        S   W+V +EQ P+
Sbjct:    3 ATSTQQSLLHLYRKLLRSCQTFPSRKRDSIHQAIREDFRFYQNEQDPHKIEQQISIAIKGLDQLQQFNVSRMTSTSSSSWNVHLEQNPM 91          
BLAST of EWM26803.1 vs. NCBI_GenBank
Match: gi|676384107|ref|XP_009035332.1| (hypothetical protein AURANDRAFT_62461 [Aureococcus anophagefferens] >gi|323454678|gb|EGB10548.1| hypothetical protein AURANDRAFT_62461 [Aureococcus anophagefferens])

HSP 1 Score: 73.9442 bits (180), Expect = 5.452e-14
Identity = 42/91 (46.15%), Postives = 54/91 (59.34%), Query Frame = 0
Query:   35 SVPAS-ATSAAVLHLYRRIIKNAKVFPSKGRDRMLKEIREEFRLNAK-ETDPEKVKHHRSMAIQGLSQLQAYTGLEDSDMDWSVTMEQAPL 123
            +VPA  AT   +L LYRRII  A  FPSK RD++  EIR+EFR NA  E   +      ++A Q L QLQAYT ++  D  W + ME  P+
Sbjct:   32 AVPAGQATRPHILWLYRRIIFAAARFPSKNRDKVYAEIRDEFRRNAALEPGSDAAIEQVALAQQSLRQLQAYTNMQRDDGSWELNMESNPM 122          
BLAST of EWM26803.1 vs. NCBI_GenBank
Match: gi|255075235|ref|XP_002501292.1| (predicted protein [Micromonas commoda] >gi|226516556|gb|ACO62550.1| predicted protein [Micromonas commoda])

HSP 1 Score: 70.8626 bits (172), Expect = 2.972e-13
Identity = 35/84 (41.67%), Postives = 52/84 (61.90%), Query Frame = 0
Query:   42 SAAVLHLYRRIIKNAKVFPSKGRDRMLKEIREEFRLNAKETDPEKVKHHRSMAIQGLSQLQAYTGLEDSDMDWSVTMEQAPLGG 125
            S + L LYR I+K AK FPSK R  +++EI+ EFR NA  TD   V+   ++A  GL +++A+TGL+     W V++ + P  G
Sbjct:    2 SGSTLRLYRHILKAAKTFPSKNRAGLIEEIKTEFRENAGATDAGDVQKKLALARDGLDRMRAFTGLDQGASKWDVSL-KGPYDG 84          
BLAST of EWM26803.1 vs. NCBI_GenBank
Match: gi|698796244|ref|XP_009831151.1| (hypothetical protein H257_07358 [Aphanomyces astaci] >gi|574113821|gb|ETV79310.1| hypothetical protein H257_07358 [Aphanomyces astaci])

HSP 1 Score: 70.4774 bits (171), Expect = 6.525e-13
Identity = 31/85 (36.47%), Postives = 53/85 (62.35%), Query Frame = 0
Query:   40 ATSAAVLHLYRRIIKNAKVFPSKGRDRMLKEIREEFRLNAKETDPEKVKHHRSMAIQGLSQLQAYTGLEDSDMDWSVTMEQAPLG 124
            ++S  V  +YRR+++ A  FPS  + +++++I+ EF  N   TDP K+K   ++AI+G+ QL  Y  L+ +   WSV M++ P G
Sbjct:    2 SSSPTVPQIYRRVLQLANKFPSIKQKQLVQDIKLEFHENKALTDPAKIKEKINIAIKGIQQLNQYVALDPNAQSWSVDMDKDPFG 86          
The following BLAST results are available for this feature:
BLAST of EWM26803.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Position :
0
Zoom :
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01SequenceEWM26803.1XP_005854002.1CBJ26781.1KXZ49360.1XP_001693795.1XP_008871187.1GAX25462.1XP_009035332.1XP_002501292.1XP_009831151.1
Match NameE-valueIdentityDescription
gi|585108894|gb|EWM26803.1|1.062e-118100.00Complex 1 LYR protein [Nannochloropsis gaditana][more]
gi|553183961|ref|XP_005854002.1|4.176e-9299.24hypothetical protein NGA_0419902 [Nannochloropsis ... [more]
gi|298712513|emb|CBJ26781.1|1.258e-2757.47conserved unknown protein [Ectocarpus siliculosus][more]
gi|1004141367|gb|KXZ49360.1|4.011e-1653.73hypothetical protein GPECTOR_22g954 [Gonium pector... [more]
gi|159471301|ref|XP_001693795.1|2.868e-1551.47predicted protein [Chlamydomonas reinhardtii] >gi|... [more]
gi|673034452|ref|XP_008871187.1|4.264e-1541.18hypothetical protein H310_07567 [Aphanomyces invad... [more]
gi|1210515569|dbj|GAX25462.1|7.481e-1539.33hypothetical protein FisN_12Lu003 [Fistulifera sol... [more]
gi|676384107|ref|XP_009035332.1|5.452e-1446.15hypothetical protein AURANDRAFT_62461 [Aureococcus... [more]
gi|255075235|ref|XP_002501292.1|2.972e-1341.67predicted protein [Micromonas commoda] >gi|2265165... [more]
gi|698796244|ref|XP_009831151.1|6.525e-1336.47hypothetical protein H257_07358 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3847rna3847Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications