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Properties
| Property Name | Value |
|---|
| Product | ribose-5-phosphate isomerase |
| Orig transcript id | gnl|cribi|Naga_100018g63.2773.mrna |
| Orig protein id | gnl|cribi|Naga_100018g63.2773 |
| Gene | RPI |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:199099..202457 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3845 ID=rna3845|Name=rna3845|organism=Nannochloropsis gaditana|type=mRNA|length=666bp
ATGTCGTATTCCTACCACAAATCGTTCAGGATCTTCGACGCACTTTTTCG
TGCATTCTCTCCAAAAAATTTCACAATGCTTGCTACGGCCACCCGTCACG
TAGCTCGTCGCATCGCCTGCTCCTCAACCGTCTTTCAGCCGACACTGCGC
CGTACGATAGCAACCACACGCTACGCAACGTCACACGAGTGGGTGAAGCT
GGATGGGGACATCGCCACTGTGGGCATTACTGACTTCGCGGCCAAGGCCC
TGGGGGACGTGGTTTACGTGGACTTGCCGGAAGGACCCCTTTGGCTCCGT
CGAGTCTGTCAAGGCCGCCAGCGACGTGTACGCGCCCGTCTCAGGAGAGA
TCATCGAGTCGAATGCGTCCCTTTCCGAGGACCCCGGGAATGTGAACAAC
GCCGCGGAAACAGACGCGTGGTTCACGAAGTTCAAGGTGACAGACAAGGC
AGAATTCGAGGCATTGATGGACGCAGCGGCCTACAAAAAACATACAGAGA
CGGCATAGGGGCTCGGAGTGATAAGAGAGACGTGTGGATGATAGCGAGTG
TGGGGCGGGCAGTGATTGTTATACATACCGAGGAAAAAGAGAGGGGAAGA
AGGGAGCAGGGCCGGGGAGGGACTTTGGTAGGGGGAAGACGGACGACGGC
ATGGACTAGGTGGTAA back to topprotein sequence of rna3845 >rna3845-protein ID=rna3845-protein|Name=rna3845|organism=Nannochloropsis gaditana|type=polypeptide|length=213bp
MAPFVPASSFPSLLAVDPTASTFPQEPNESLLLMLLIDHLTYPPPIFPLV
PSMSNSCSPVERLGMKLKADPALNLVKGRGGALLREKMVEVCAKKFIVIV
DDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGD
KPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVI
VAGKEGIEVINKK back to topmRNA from alignment at CM002462.1:199099..202457+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3845 ID=rna3845|Name=rna3845|organism=Nannochloropsis gaditana|type=mRNA|length=3359bp|location=Sequence derived from alignment at CM002462.1:199099..202457+ (Nannochloropsis gaditana)
GTAGGCCGCTGCGTCCATCAATGCCTCGAATTCTGCCTTGTCTGTCACCT
TGAACTTCGTGAACCACGCGTCTGTTTCCGCGGCGTTGTTCACATTCCCG
GGGTCCTCGGAAAGGGACGCATTCGACTCGATGATCTCTCCTGAGACGGG
CGCGTACACGTCGCTGGCGGCCTTGACAGACTCGACGGAGCCAAAGGGGT
CCCTGGAATaggggggtcgaggggggagacgcgTTGTATTATATATATGC
GGGCTTCAAAGCACCATATTCATGGCGTGTACGTTGATTCGACATGTGGC
GTGTCCAAACGTgtaaaaaggaaaaggaaatgcCAGGTAAGCACCCGGAT
AGAAGCGATGGGGTCGCTGAGCGGTCGAAAGATCCTCTTCACACCGCCGT
GCTTACCCTTTACTGAAGGATGCCCCTACTTCCGGCAAGTCCACGTAAAC
CACGTCCCccagggccttggccgcgaAGTCAGTAATGCCCACAGTGGCGA
TGTCCCCATCCAGCTTCACCCACTCGTGTGACGTTGCGTAGCGTGTGGTT
GCTATCGTACGGCGCAGTGTCGGCTGAAAGACGGTTGACTGGACTCAGAC
AAAGAACAGATGTATGATCGTGGGACATCGAGGAAGGTAAATCAGTAGCA
GATAACGATCGCTTCAACGCATGGCGATCAAGGCGGATTTGTTTCCATGT
AATATGCACAGAATGGGACGAGGCGGCTCACAGAAGGGATTGGCACGTGT
GCTTGATATCATGAAAAGGGAGCTCAAAATCTGAAAACTTACGGAGCAGG
CGATGCGACGAGCTACGTGACGGGTGGCCGTAGCAAGCATTGTGAAATTT
TTTGGAGAGAATGCACGAAAAAGTGCGTCGAAGATCCTGAACGATTTGTG
GTAGGAATACGACATCGTGATATGAGACTGAACATAAGCGAGAGAGGAGC
ACTGCTTCTTTCGTGAGGATCGGGCGACATGAACCACTTTCGTCAGTAAT
AAGTACTGGTGCAGTCCTGTAGTATGAACAGGTGAGGGGTAGATTTTCGA
GAGACCGATGAACAGCCAATTTGTGTGCATTTGCTGAAGTCCTAGAGGCA
CCTTATCGCCGGTCTCATTGCACGCATCGAGCTCGAGAAAAGACTCGTCC
CCACCCCATCCGCCACTCCTTCGCATGACCTCGGACATCACGTCTCCCTG
CCTATCAAACGCCACACGCGTCGCGCCCGTGGCGTGCAGGTACTGGGTAC
CAAGCAATCAGGTTGCACAGCCAGAGAAAGTGAccgccggggggggggaa
gatcgTATGGTAAAGAGCGAGCCAACGGGTTCGGACCACCCCCACGCCAA
ATTTCCTCCGGCCGTGGGCAGGGGGGAATTATTTGGATTGCTGGTGTCCT
GATGATGGATGCTCGGCTTGGTGGTTGATATGATGCGTAGACGCTTTTTA
AGATTGTCTCGTGGGGCAGGATGTTGCTTTGTTTCGGGCACTGGCACTTG
GATTATAATGCCCCGGTCGTTTGCCAATGCAAGTCAGTCAAGGACATCAT
TAACAGCATGATTTTTTTTTATCGCCTTTATTATCCCGCACTCCTAGACC
CTTCATTTACATCTTAACATCTAGAAATGGCCCGCCAAAAGAATATCTTC
TCTGTGATGGCCATGGTCACTGTCGGCGCGTCCGCGTTTATTCTGCCCCT
GAAGCAACCCCTCAACGGCCCAGCCCTATGTGTTCAACGTGCCTCTTCTA
CCGCCCGCTTTGCGGTTAGTCAAGACGAATTGAAGAAGCAAGTGGGCTAC
AAATCGGTGGACGACTACGTGCAGAGTGGAATGGTTGTGGGTTTGGGCAC
TGGCTCCACTGCCGCTTTTGCTGGTAGGTACATGGGGAGGCTGTAGGTAT
CGAAGTAGAAGAGTATAAATGCCGCTATATTCTCATGCCTCTCTGGGACA
TTCTGTCTCCCGCAGTGGAGTGATGGTTCGATAGATCTACGAGGAAAAAC
CCCGCGTGGCAACATGAAGACCACCTTGTCCTTTGAATGGCGCCCTTTGT
CCCTGCCTcgtcgtttccctccctccttgctgtcGATCCTACCGCGTCAA
CTTTCCCACAAGAACCCAACGAAAGCCTTCTTTTGATGCTCCTCATTGAC
CATCTTACTTATCCCCCGCCtattttcccccttgtcccaTCCATGTCCAA
TTCATGTTCGCCAGTGGAGCGATTGGGCATGAAGCTTAAAGCAGGTGAGT
TAAAGGACATAGTggccatccccacctccatccgAACCAAGGAGCAAGCA
GAGAGTCTGGGCGTTCCCTTGGTGACGCTCGATTCTCACTCCGTCTTGGA
CGTGGCGATTGACGGCGCGGATGAGGTAGACCCGGCCCTGAATTTGGTca
agggacgtggaggggccTTATTGCGCGagaagatggtggaggtAAGCCCG
AGGacagaaagagaggaagacgaagaggggaaaagaagagatgATAGGGT
GGGAGACACGGATacgaaggaagggacatgctagacgaggaagaggaaag
tgaaAGACGGCTTCAGGGGTTGGtagcggggaaggggaggggggcaatgg
aggtcagagaggaggaagggaggaggacgcggaggataGAAGAGATCCTT
GGTCTCTCCGGTCGATACAATATCGTGTATGAAACGACGCCCACCCTCGG
Gcatcctctgcctcctgcccccccaccttccggccctctctcccgtcttc
tccccgcaGGTGTGCGCCAAGAAGTTCATCGTTATCGTGGATGACAGCAA
AATGGTTCCGGGATTGGGCGTGACGGGAGCCATGCCCGTGGAAATTACCC
CTTTCTGCCATGAACACACTCAACGCACGATTCTGGAGCTCCCGGGGGTC
AAGGGCGCAGCCACAGGGAAGCTGCGCATGGACGGCGACAAGCCCTACGT
TACGGACAACGACAACTACATTGTGGATTTGTACTACACGGATCCGATCG
CGGACGTGAAAGCGGTGgcgcgggccttggagggagtggtgggggtggtg
gagcaCGGTTTCTTCTTGGACATGACCACCGCGGTGATTGTGGCTGGCAA
AGAGGGAATCGAGGTCATCAACAAGAagtaaggaggggaaaggatacTAT
GGGGGATATGACGAAGGCTTGATTGAGGGCCTGAAGCCCGAAAAAGGGGT
GAAAGGGCGAAACTTtgcgagaaaggagaaagtgaTGCATGTAATGACGT
GGAACGGCGGCATCTCGCAGGCCACCTCTCTTCTTGCGATCTTGTTCACC
GCACACGATGAATGGAAGCAAAACAAAGCGCTAGAAGCGATCATTGGCAT
CAATGTTGG back to topCoding sequence (CDS) from alignment at CM002462.1:199099..202457+ >rna3845 ID=rna3845|Name=rna3845|organism=Nannochloropsis gaditana|type=CDS|length=1926bp|location=Sequence derived from alignment at CM002462.1:199099..202457+ (Nannochloropsis gaditana)
ATGGCGCCCTTTGTCCCTGCCTcgtcgtttccctccctccttgctgtcGA
TCCTACCGCGTCAACTTTCCCACAAGAACCCAACGAAAGCCTTCTTTTGA
TGCTCCTCATTGACCATCTTACTTATCCCCCGCCtattttcccccttgtc
ccaTCCATGTCCAATTCATGTTCGCCAGTGGAGCGATTGGGCATGAAGCT
TAAAGCAGACCCGGCCCTGAATTTGGTcaagggacgtggaggggccTTAT
TGCGCGagaagatggtggagGTGTGCGCCAAGAAGTTCATCGTTATCGTG
GATGACAGCAAAATGGTTCCGGGATTGGGCGTGACGGGAGCCATGCCCGT
GGAAATTACCCCTTTCTGCCATGAACACACTCAACGCACGATTCTGGAGC
TCCCGGGGGTCAAGGGCGCAGCCACAGGGAAGCTGCGCATGGACGGCGAC
AAGCCCTACGTTACGGACAACGACAACTACATTGTGGATTTGTACTACAC
GGATCCGATCGCGGACGTGAAAGCGGTGgcgcgggccttggagggagtgg
tgggggtggtggagcaCGGTTTCTTCTTGGACATGACCACCGCGGTGATT
GTGGCTGGCAAAGAGGGAATCGAGGTCATCAACAAGAagtaaATGGCGCC
CTTTGTCCCTGCCTcgtcgtttccctccctccttgctgtcGATCCTACCG
CGTCAACTTTCCCACAAGAACCCAACGAAAGCCTTCTTTTGATGCTCCTC
ATTGACCATCTTACTTATCCCCCGCCtattttcccccttgtcccaTCCAT
GTCCAATTCATGTTCGCCAGTGGAGCGATTGGGCATGAAGCTTAAAGCAG
ACCCGGCCCTGAATTTGGTcaagggacgtggaggggccTTATTGCGCGag
aagatggtggagGTGTGCGCCAAGAAGTTCATCGTTATCGTGGATGACAG
CAAAATGGTTCCGGGATTGGGCGTGACGGGAGCCATGCCCGTGGAAATTA
CCCCTTTCTGCCATGAACACACTCAACGCACGATTCTGGAGCTCCCGGGG
GTCAAGGGCGCAGCCACAGGGAAGCTGCGCATGGACGGCGACAAGCCCTA
CGTTACGGACAACGACAACTACATTGTGGATTTGTACTACACGGATCCGA
TCGCGGACGTGAAAGCGGTGgcgcgggccttggagggagtggtgggggtg
gtggagcaCGGTTTCTTCTTGGACATGACCACCGCGGTGATTGTGGCTGG
CAAAGAGGGAATCGAGGTCATCAACAAGAagtaaATGGCGCCCTTTGTCC
CTGCCTcgtcgtttccctccctccttgctgtcGATCCTACCGCGTCAACT
TTCCCACAAGAACCCAACGAAAGCCTTCTTTTGATGCTCCTCATTGACCA
TCTTACTTATCCCCCGCCtattttcccccttgtcccaTCCATGTCCAATT
CATGTTCGCCAGTGGAGCGATTGGGCATGAAGCTTAAAGCAGACCCGGCC
CTGAATTTGGTcaagggacgtggaggggccTTATTGCGCGagaagatggt
ggagGTGTGCGCCAAGAAGTTCATCGTTATCGTGGATGACAGCAAAATGG
TTCCGGGATTGGGCGTGACGGGAGCCATGCCCGTGGAAATTACCCCTTTC
TGCCATGAACACACTCAACGCACGATTCTGGAGCTCCCGGGGGTCAAGGG
CGCAGCCACAGGGAAGCTGCGCATGGACGGCGACAAGCCCTACGTTACGG
ACAACGACAACTACATTGTGGATTTGTACTACACGGATCCGATCGCGGAC
GTGAAAGCGGTGgcgcgggccttggagggagtggtgggggtggtggagca
CGGTTTCTTCTTGGACATGACCACCGCGGTGATTGTGGCTGGCAAAGAGG
GAATCGAGGTCATCAACAAGAagtaa back to top
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