EWM26793.1, cds3836 (CDS) Nannochloropsis gaditana

Overview
NameEWM26793.1
Unique Namecds3836
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:201135..201342 +
Alignment locationCM002462.1:201478..201539 +
Alignment locationCM002462.1:201858..202229 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26793.1
Productribose-5-phosphate isomerase
Orig transcript idgnl|cribi|Naga_100018g63.2773.mrna
GeneRPI
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:201135..201342 +
CM002462.1supercontigCM002462.1:201478..201539 +
CM002462.1supercontigCM002462.1:201858..202229 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0004751ribose-5-phosphate isomerase activity
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
GO:0009052pentose-phosphate shunt, non-oxidative branch
Vocabulary: INTERPRO
TermDefinition
IPR004788Ribose5P_isomerase_typA
Homology
BLAST of EWM26793.1 vs. NCBI_GenBank
Match: gi|585108884|gb|EWM26793.1| (ribose-5-phosphate isomerase [Nannochloropsis gaditana])

HSP 1 Score: 431.024 bits (1107), Expect = 1.094e-152
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0
Query:    1 MAPFVPASSFPSLLAVDPTASTFPQEPNESLLLMLLIDHLTYPPPIFPLVPSMSNSCSPVERLGMKLKADPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINKK 213
            MAPFVPASSFPSLLAVDPTASTFPQEPNESLLLMLLIDHLTYPPPIFPLVPSMSNSCSPVERLGMKLKADPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINKK
Sbjct:    1 MAPFVPASSFPSLLAVDPTASTFPQEPNESLLLMLLIDHLTYPPPIFPLVPSMSNSCSPVERLGMKLKADPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINKK 213          
BLAST of EWM26793.1 vs. NCBI_GenBank
Match: gi|585108883|gb|EWM26792.1| (ribose-5-phosphate isomerase [Nannochloropsis gaditana])

HSP 1 Score: 317.005 bits (811), Expect = 2.617e-107
Identity = 155/160 (96.88%), Postives = 156/160 (97.50%), Query Frame = 0
Query:   54 SNSCSPVERLGMKLKADPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINKK 213
            S +   VERLGMKLKADPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINKK
Sbjct:   77 STAAFAVERLGMKLKADPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINKK 236          
BLAST of EWM26793.1 vs. NCBI_GenBank
Match: gi|553183958|ref|XP_005854001.1| (ribose 5-phosphate isomerase A [Nannochloropsis gaditana CCMP526] >gi|422295057|gb|EKU22356.1| ribose 5-phosphate isomerase A [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 297.745 bits (761), Expect = 4.256e-99
Identity = 151/166 (90.96%), Postives = 153/166 (92.17%), Query Frame = 0
Query:   48 PLVPSMSNSCSPVERLGMKLKADPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINKK 213
            PLV   S+S   V   G   + DPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINKK
Sbjct:  117 PLVTLDSHSVLDVAIDGAD-EVDPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINKK 281          
BLAST of EWM26793.1 vs. NCBI_GenBank
Match: gi|299470524|emb|CBN78515.1| (Ribose-5-phosphate isomerase [Ectocarpus siliculosus])

HSP 1 Score: 203.756 bits (517), Expect = 1.211e-62
Identity = 100/145 (68.97%), Postives = 112/145 (77.24%), Query Frame = 0
Query:   68 KADPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINK 212
            + DP LNLVKGRGGALLREKMVEVCAKKFIVIVDDSK VPGLG++GAMPVE+TPFC EHT  T+  LP +KG    KLR +  KPYVTDNDNYIVDLY+TDPI D     + +   VGVVEHG FLDM+ AVI AG +GI V  K
Sbjct:   91 EVDPDLNLVKGRGGALLREKMVEVCAKKFIVIVDDSKFVPGLGISGAMPVEVTPFCWEHTLNTVKNLPSIKG-CDAKLREEDGKPYVTDNDNYIVDLYFTDPIKDANQAGKEMLETVGVVEHGLFLDMSFAVISAGTDGITVKTK 234          
BLAST of EWM26793.1 vs. NCBI_GenBank
Match: gi|1189379739|gb|OSX68429.1| (hypothetical protein BU14_2821s0001 [Porphyra umbilicalis])

HSP 1 Score: 191.43 bits (485), Expect = 4.644e-57
Identity = 94/144 (65.28%), Postives = 113/144 (78.47%), Query Frame = 0
Query:   68 KADPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVIN 211
            + D  LNLVKGRGGALLREKMVEV AKKF+VIVDD+K+VPGLG++GAMPVE+TPFC + T   +LEL  + G  T K+R DG KPYVTDNDNYIVDLY+T+PIAD       +  +VGVVEHG FL MT+ VIVAG +G++VI 
Sbjct:  146 EVDGDLNLVKGRGGALLREKMVEVSAKKFVVIVDDTKLVPGLGISGAMPVEVTPFCVDFTVARLLELGSIAG-CTAKVRDDGGKPYVTDNDNYIVDLYFTEPIADAVKAGEEINALVGVVEHGLFLGMTSEVIVAGADGVKVIK 288          
BLAST of EWM26793.1 vs. NCBI_GenBank
Match: gi|544215034|ref|XP_005537663.1| (ribose 5-phosphate isomerase [Cyanidioschyzon merolae strain 10D] >gi|449018225|dbj|BAM81627.1| ribose 5-phosphate isomerase [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 191.43 bits (485), Expect = 5.757e-57
Identity = 92/138 (66.67%), Postives = 104/138 (75.36%), Query Frame = 0
Query:   70 DPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGI 207
            D ALNLVKGRGGALLREKMVEVCAK+FIVIVD+SK+VPGLGV+GAMPVE+TPFC +HT R I  LP + G      R      YVTDN NYIVDLY+  PIAD    A+AL   VGVVEHG FLDM + VIVAG +G+
Sbjct:  161 DSALNLVKGRGGALLREKMVEVCAKQFIVIVDESKLVPGLGVSGAMPVEVTPFCWQHTMRKIAALPALAGCRAEARRDAAGALYVTDNGNYIVDLYFEKPIADAYQAAQALRDTVGVVEHGLFLDMASVVIVAGAQGV 298          
BLAST of EWM26793.1 vs. NCBI_GenBank
Match: gi|1026764362|gb|OAE25204.1| (hypothetical protein AXG93_855s1030 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 181.03 bits (458), Expect = 6.612e-53
Identity = 86/144 (59.72%), Postives = 108/144 (75.00%), Query Frame = 0
Query:   70 DPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTG-AMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINK 212
            DP LNLVKGRGGALLREKMVE  + KF+VIVD++K+V GLG +G AMPVE+  FC ++    +  LP V G    +LRMDGDKPYVTDN NYI+DLY+ DPI D  A A+A+  + GVV+HG FL+M TAVI+AG +G+ V +K
Sbjct:  162 DPDLNLVKGRGGALLREKMVEAASAKFVVIVDETKLVDGLGGSGLAMPVEVVQFCWKYNAERLKNLPEVAGCEV-QLRMDGDKPYVTDNSNYIIDLYFKDPIKDANAAAKAISSLEGVVDHGLFLNMATAVIIAGSDGVSVKSK 304          
BLAST of EWM26793.1 vs. NCBI_GenBank
Match: gi|546314819|ref|XP_005715683.1| (Ribose-5-phosphate isomerase, partial [Chondrus crispus] >gi|507112172|emb|CDF35864.1| Ribose-5-phosphate isomerase, partial [Chondrus crispus])

HSP 1 Score: 178.333 bits (451), Expect = 1.121e-52
Identity = 91/144 (63.19%), Postives = 110/144 (76.39%), Query Frame = 0
Query:   68 KADPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTGAMPVEITPFCHEHTQRTILELPGVKGAATGKLRMD--GDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEV 209
            + DP LNLVKGRGGALLREKMVEV AKKFIVIVD+SK+V GLG++GAMPVE+TPF  +   + ++EL  VKG  T KLRMD  G  PYVTDN NYIVDLY+  PI D     +  + +VGVVEHG FL M++AVI+AGK+G+ V
Sbjct:   86 EVDPHLNLVKGRGGALLREKMVEVQAKKFIVIVDESKLVDGLGISGAMPVEVTPFSSQFNLKRLVELDSVKG-CTAKLRMDDAGTSPYVTDNHNYIVDLYFDKPIRDPVQAGKDFDSLVGVVEHGLFLGMSSAVIIAGKDGVYV 228          
BLAST of EWM26793.1 vs. NCBI_GenBank
Match: gi|407369313|emb|CBX25073.1| (ribose-5-phosphate isomerase [Polytomella sp. Pringsheim 198.80])

HSP 1 Score: 177.948 bits (450), Expect = 1.639e-52
Identity = 89/145 (61.38%), Postives = 109/145 (75.17%), Query Frame = 0
Query:   70 DPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTG-AMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINKK 213
            DP L++VKGRGGALLREKMVE  +K F+ IVDDSK+V GLG +  AMP+EI  FCH++T R I  LP V G  T KLRM+GDKPYVTDN NYI+DLY+  P+AD KA + A+  + GVV+HG FLDM    I+AGKEG+EV  +K
Sbjct:   96 DPNLDVVKGRGGALLREKMVEKASKLFVCIVDDSKLVDGLGGSKLAMPIEIVQFCHQYTIRRIAALPQVAGC-THKLRMEGDKPYVTDNGNYIIDLYFETPMADSKAASEAILALEGVVDHGLFLDMVGVCIIAGKEGVEVRTRK 239          
BLAST of EWM26793.1 vs. NCBI_GenBank
Match: gi|971507917|dbj|GAQ90284.1| (ribose 5-phosphate isomerase A [Klebsormidium nitens])

HSP 1 Score: 179.874 bits (455), Expect = 2.843e-52
Identity = 90/144 (62.50%), Postives = 108/144 (75.00%), Query Frame = 0
Query:   70 DPALNLVKGRGGALLREKMVEVCAKKFIVIVDDSKMVPGLGVTG-AMPVEITPFCHEHTQRTILELPGVKGAATGKLRMDGDKPYVTDNDNYIVDLYYTDPIADVKAVARALEGVVGVVEHGFFLDMTTAVIVAGKEGIEVINK 212
            DP LNLVKGRGGALLREKMVE  +KKF+VIVD++K+V GLG +  AMPVEI  FC ++  + +  LP VKG  T KLRM+GDKPYVTDN NYIVDLY+ +PI D  A + A+  + GVV+HG FLDM T VI+AG  GIEV  K
Sbjct:  175 DPDLNLVKGRGGALLREKMVEKASKKFVVIVDETKLVDGLGGSKLAMPVEIVQFCWKYNLQRLENLPEVKGC-TAKLRMEGDKPYVTDNSNYIVDLYFEEPIKDAHAASEAILALEGVVDHGLFLDMATVVIIAGSNGIEVREK 317          
The following BLAST results are available for this feature:
BLAST of EWM26793.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108884|gb|EWM26793.1|1.094e-152100.00ribose-5-phosphate isomerase [Nannochloropsis gadi... [more]
gi|585108883|gb|EWM26792.1|2.617e-10796.88ribose-5-phosphate isomerase [Nannochloropsis gadi... [more]
gi|553183958|ref|XP_005854001.1|4.256e-9990.96ribose 5-phosphate isomerase A [Nannochloropsis ga... [more]
gi|299470524|emb|CBN78515.1|1.211e-6268.97Ribose-5-phosphate isomerase [Ectocarpus siliculos... [more]
gi|1189379739|gb|OSX68429.1|4.644e-5765.28hypothetical protein BU14_2821s0001 [Porphyra umbi... [more]
gi|544215034|ref|XP_005537663.1|5.757e-5766.67ribose 5-phosphate isomerase [Cyanidioschyzon mero... [more]
gi|1026764362|gb|OAE25204.1|6.612e-5359.72hypothetical protein AXG93_855s1030 [Marchantia po... [more]
gi|546314819|ref|XP_005715683.1|1.121e-5263.19Ribose-5-phosphate isomerase, partial [Chondrus cr... [more]
gi|407369313|emb|CBX25073.1|1.639e-5261.38ribose-5-phosphate isomerase [Polytomella sp. Prin... [more]
gi|971507917|dbj|GAQ90284.1|2.843e-5262.50ribose 5-phosphate isomerase A [Klebsormidium nite... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3845rna3845Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications