rna3842, rna3842 (mRNA) Nannochloropsis gaditana

Overview
Namerna3842
Unique Namerna3842
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length966
Alignment locationCM002462.1:196563..197686 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101932g1.2518.mrna
Orig protein idgnl|cribi|Naga_101932g1.2518
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:196563..197686 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101932g1gene3698Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3842rna3842-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26840.1cds3833Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3842 ID=rna3842|Name=rna3842|organism=Nannochloropsis gaditana|type=mRNA|length=966bp
ATGCATCTGTATATAATGCTAGCTGCAGCATCCAGTGCCGATGAATGGGA
GACCGTTGCAGAAGCATGCGTCGCGGACTTGAGGGGTAATGTCAGACATG
TTGCCCGTCGTCTGGTAGCAGCTGCTCCCAAGCCGCCCTTTTTGGATAAG
AAAGGAGACAAATTCCCACATGCATCGCAAAAAAGGCCCGAAACAGCACA
GGATCAGTGCAAGGAGACCGGATGTGTGGGAAAGGAAGGTGGGAGAGAGA
ATGGAGATGGAGGCCAGGCCCAAAACGCGTGCTCGTCCCGGGGGCTTCGT
GGTAGCTATGCGGCTGACGAGTATATGTTCAACTACCTGATCGTGCGGGC
GCCAAGGTCCTGCACACCCCCAGCACCACACGCCTTTGCGTCCCAATGCT
GTCCCTCGTGGCCGGGGGAGATGGCCTTGTTGGTTTTATGCCTGGTGGAC
CGAGACTCGCCGGTCGCGCAAAGTTTTGAATTCTTGGAGGGCTTGGGAGC
CAGGGCGCTGGGAAGCCTGCGACGAAGCCACAGCAGCACGTGCGATGAAA
AGAAATTGGAAATGGCCACCAATGCCGTTTCTGAGATCTCCCCTCTCCAG
GAAGACCATTCGGATGCAGGTCGCTGGCCACGCACGCTCTCCCGGCTCCA
CACTTCCTCCCTCGCTGTCCTCCGGGACTACTACCACGGCTGCAACCAAG
CCTACACCATCTTTCCCTTCTCTGCCTCCGCACCTCCCTCCCATGCCACC
CTCCTACCTCCAGCGCAATCTTCTCCTTTCATATCCATCACGGCGCCTCC
CCCCCCCTTCTTTCCCGCCTCTCCCCGGAACCCCTCACCATCCCTGCATC
TTCCTCCACCTCGCCCTCCACCTCGCCCTCCACCTTTTCCTCCCTCCGAC
CTCGCTCGTGGGGCCCATCGGTCTCCACAGACAAAACCCGAGAAGGAAGC
TTCCTCTTGGAAGTGA
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protein sequence of rna3842

>rna3842-protein ID=rna3842-protein|Name=rna3842|organism=Nannochloropsis gaditana|type=polypeptide|length=269bp
MHRLVAPLVVDSETATLLCQDILRASSRTASGGDSYVITTSLLVRPGNLL
TPAMAASSIPISIHIGAEEGVVDIAAYNSYVLHWDMLEDGGGGAGKEGRK
EARNPSEWDLPMWQSYIDGGREGTSTRKKMGGFLTQMLQASGGNGFQRHV
HPRRYFQDRGEGPGEGIGTREECTGTEDAEKEKEQTGVGSKKESDQDRLG
EKGEGRGEGGGGRVKGEEEEEEAEAGERIVLQTLLEVRLDVLTRNSSRKM
RVWCQETEKVPGSFLRPGT
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mRNA from alignment at CM002462.1:196563..197686+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3842 ID=rna3842|Name=rna3842|organism=Nannochloropsis gaditana|type=mRNA|length=1124bp|location=Sequence derived from alignment at CM002462.1:196563..197686+ (Nannochloropsis gaditana)
ATGCACCGACTGGTCGCCCCCTTGGTGGTGGATTCGGAAACCGCCACGTT
GCTCTGTCAAGACATTTTACGGGCATCCTCTAGGACGGCCTCAGGAGGTG
AGCAGGGGTTAGGGCTTCCCACGGCGTGCGACGGTGTCaggtggagcagg
cgggggagctgACAGATGCAAGAAAACTtgcttccacccccttcctatCT
TGGGCTTGAGCGACCGAGTTCCTGTTCTTTAACGGCAGACTAAGCCTTCA
ATGACTATCACTGAAAGATTTATCACGCGCTTGGTTTCTACGCTGAccac
caacctccctccctccttcctttcctccctttttcttccttccccaggcG
ATTCCTATGTTATTACCACGAGCCTTCTGGTACGGCCAGGCAACCTTCTG
ACTCCCGCAATGgccgcctcttccatccccattTCTATCCATATcggtgc
ggaggaaggggttgtcGACATTGCTGCCTACAATAGCTACGTATTGCACT
GGGACAtgctggaggacggaggggggggagccgggaaggaggggaggaag
gaggccagAAATCCAAGTGAGTGGGACCTTCCAATGTGGCAATCCTATAt
agacggaggacgggaagggacaagcacgaggaaaaaaatgggaGGGTTCT
TGACGCAGATGCTGCAGGCGTCGGGGGGTAACGGTTTTCAACGGCATGTT
CATCCGCGCCGTTATTTTCAGGACCGTGGGGaagggcctggggagggtat
agggacgagggaggaatgcACAGGAACTGAAGATgctgaaaaggaaaagg
agcagaCAGGCGTGGGCtccaagaaggaaagcgatCAAGATAGGcttgga
gagaaaggggagggaagaggggaagggggcggaggaagggtgaagggaga
ggaggaggaggaggaggcggaagcggggGAGCGGATCGTCCTCCAGACTC
TGTTGGAGGTGAGACTCGACGTTTTGACAcgcaacagcagcagaaaGATG
CGTGTATGGTGCCAGGAAACCGAAAAAGTACCCGGATCTTTCTTGGTCct
gggagcaggggaggggaaggtaaATGGGACCTATTTCCTGCACGGTTTCC
AGGGTCGAGCGCCCTGGtacatga
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Coding sequence (CDS) from alignment at CM002462.1:196563..197686+

>rna3842 ID=rna3842|Name=rna3842|organism=Nannochloropsis gaditana|type=CDS|length=2430bp|location=Sequence derived from alignment at CM002462.1:196563..197686+ (Nannochloropsis gaditana)
ATGCACCGACTGGTCGCCCCCTTGGTGGTGGATTCGGAAACCGCCACGTT
GCTCTGTCAAGACATTTTACGGGCATCCTCTAGGACGGCCTCAGGAGgcG
ATTCCTATGTTATTACCACGAGCCTTCTGGTACGGCCAGGCAACCTTCTG
ACTCCCGCAATGgccgcctcttccatccccattTCTATCCATATcggtgc
ggaggaaggggttgtcGACATTGCTGCCTACAATAGCTACGTATTGCACT
GGGACAtgctggaggacggaggggggggagccgggaaggaggggaggaag
gaggccagAAATCCAAGTGAGTGGGACCTTCCAATGTGGCAATCCTATAt
agacggaggacgggaagggacaagcacgaggaaaaaaatgggaGGGTTCT
TGACGCAGATGCTGCAGGCGTCGGGGGGTAACGGTTTTCAACGGCATGTT
CATCCGCGCCGTTATTTTCAGGACCGTGGGGaagggcctggggagggtat
agggacgagggaggaatgcACAGGAACTGAAGATgctgaaaaggaaaagg
agcagaCAGGCGTGGGCtccaagaaggaaagcgatCAAGATAGGcttgga
gagaaaggggagggaagaggggaagggggcggaggaagggtgaagggaga
ggaggaggaggaggaggcggaagcggggGAGCGGATCGTCCTCCAGACTC
TGTTGGAGGTGAGACTCGACGTTTTGACAcgcaacagcagcagaaaGATG
CGTGTATGGTGCCAGGAAACCGAAAAAGTACCCGGATCTTTCTTGCGCCC
TGGtacatgaATGCACCGACTGGTCGCCCCCTTGGTGGTGGATTCGGAAA
CCGCCACGTTGCTCTGTCAAGACATTTTACGGGCATCCTCTAGGACGGCC
TCAGGAGgcGATTCCTATGTTATTACCACGAGCCTTCTGGTACGGCCAGG
CAACCTTCTGACTCCCGCAATGgccgcctcttccatccccattTCTATCC
ATATcggtgcggaggaaggggttgtcGACATTGCTGCCTACAATAGCTAC
GTATTGCACTGGGACAtgctggaggacggaggggggggagccgggaagga
ggggaggaaggaggccagAAATCCAAGTGAGTGGGACCTTCCAATGTGGC
AATCCTATAtagacggaggacgggaagggacaagcacgaggaaaaaaatg
ggaGGGTTCTTGACGCAGATGCTGCAGGCGTCGGGGGGTAACGGTTTTCA
ACGGCATGTTCATCCGCGCCGTTATTTTCAGGACCGTGGGGaagggcctg
gggagggtatagggacgagggaggaatgcACAGGAACTGAAGATgctgaa
aaggaaaaggagcagaCAGGCGTGGGCtccaagaaggaaagcgatCAAGA
TAGGcttggagagaaaggggagggaagaggggaagggggcggaggaaggg
tgaagggagaggaggaggaggaggaggcggaagcggggGAGCGGATCGTC
CTCCAGACTCTGTTGGAGGTGAGACTCGACGTTTTGACAcgcaacagcag
cagaaaGATGCGTGTATGGTGCCAGGAAACCGAAAAAGTACCCGGATCTT
TCTTGCGCCCTGGtacatgaATGCACCGACTGGTCGCCCCCTTGGTGGTG
GATTCGGAAACCGCCACGTTGCTCTGTCAAGACATTTTACGGGCATCCTC
TAGGACGGCCTCAGGAGgcGATTCCTATGTTATTACCACGAGCCTTCTGG
TACGGCCAGGCAACCTTCTGACTCCCGCAATGgccgcctcttccatcccc
attTCTATCCATATcggtgcggaggaaggggttgtcGACATTGCTGCCTA
CAATAGCTACGTATTGCACTGGGACAtgctggaggacggaggggggggag
ccgggaaggaggggaggaaggaggccagAAATCCAAGTGAGTGGGACCTT
CCAATGTGGCAATCCTATAtagacggaggacgggaagggacaagcacgag
gaaaaaaatgggaGGGTTCTTGACGCAGATGCTGCAGGCGTCGGGGGGTA
ACGGTTTTCAACGGCATGTTCATCCGCGCCGTTATTTTCAGGACCGTGGG
GaagggcctggggagggtatagggacgagggaggaatgcACAGGAACTGA
AGATgctgaaaaggaaaaggagcagaCAGGCGTGGGCtccaagaaggaaa
gcgatCAAGATAGGcttggagagaaaggggagggaagaggggaagggggc
ggaggaagggtgaagggagaggaggaggaggaggaggcggaagcggggGA
GCGGATCGTCCTCCAGACTCTGTTGGAGGTGAGACTCGACGTTTTGACAc
gcaacagcagcagaaaGATGCGTGTATGGTGCCAGGAAACCGAAAAAGTA
CCCGGATCTTTCTTGCGCCCTGGtacatga
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Synonyms
Publications