EWM26840.1, cds3833 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM26840.1 vs. NCBI_GenBank
Match: gi|585108932|gb|EWM26840.1| (hypothetical protein Naga_101932g1 [Nannochloropsis gaditana]) HSP 1 Score: 544.273 bits (1401), Expect = 0.000e+0 Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 0
Query: 1 MHRLVAPLVVDSETATLLCQDILRASSRTASGGDSYVITTSLLVRPGNLLTPAMAASSIPISIHIGAEEGVVDIAAYNSYVLHWDMLEDGGGGAGKEGRKEARNPSEWDLPMWQSYIDGGREGTSTRKKMGGFLTQMLQASGGNGFQRHVHPRRYFQDRGEGPGEGIGTREECTGTEDAEKEKEQTGVGSKKESDQDRLGEKGEGRGEGGGGRVKGEEEEEEAEAGERIVLQTLLEVRLDVLTRNSSRKMRVWCQETEKVPGSFLRPGT 269
MHRLVAPLVVDSETATLLCQDILRASSRTASGGDSYVITTSLLVRPGNLLTPAMAASSIPISIHIGAEEGVVDIAAYNSYVLHWDMLEDGGGGAGKEGRKEARNPSEWDLPMWQSYIDGGREGTSTRKKMGGFLTQMLQASGGNGFQRHVHPRRYFQDRGEGPGEGIGTREECTGTEDAEKEKEQTGVGSKKESDQDRLGEKGEGRGEGGGGRVKGEEEEEEAEAGERIVLQTLLEVRLDVLTRNSSRKMRVWCQETEKVPGSFLRPGT
Sbjct: 1 MHRLVAPLVVDSETATLLCQDILRASSRTASGGDSYVITTSLLVRPGNLLTPAMAASSIPISIHIGAEEGVVDIAAYNSYVLHWDMLEDGGGGAGKEGRKEARNPSEWDLPMWQSYIDGGREGTSTRKKMGGFLTQMLQASGGNGFQRHVHPRRYFQDRGEGPGEGIGTREECTGTEDAEKEKEQTGVGSKKESDQDRLGEKGEGRGEGGGGRVKGEEEEEEAEAGERIVLQTLLEVRLDVLTRNSSRKMRVWCQETEKVPGSFLRPGT 269
BLAST of EWM26840.1 vs. NCBI_GenBank
Match: gi|553183967|ref|XP_005854004.1| (hypothetical protein NGA_0481900, partial [Nannochloropsis gaditana CCMP526] >gi|422295060|gb|EKU22359.1| hypothetical protein NGA_0481900, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 523.472 bits (1347), Expect = 0.000e+0 Identity = 261/266 (98.12%), Postives = 263/266 (98.87%), Query Frame = 0
Query: 1 MHRLVAPLVVDSETATLLCQDILRASSRTASGGDSYVITTSLLVRPGNLLTPAMAASSIPISIHIGAEEGVVDIAAYNSYVLHWDMLEDGGGGAGKEGRKEARNPSEWDLPMWQSYIDGGREGTSTRKKMGGFLTQMLQASGGNGFQRHVHPRRYFQDRGEGPGEGIGTREECTGTEDAEKEKEQTGVGSKKESDQDRLGEKGEGRGEGGGGRVKG-EEEEEEAEAGERIVLQTLLEVRLDVLTRNSSRKMRVWCQETEKVPGSFL 265
MHRLVAPLVVDSETATLLCQDILRASSRTASGGDSYVITTSLLVRPGNLLTPAMAASSIPISIHIGAEEGVVDIAAYNSYVLHWDMLEDGGGGAGKEGRKEARNPSEWDLPMWQSYIDGGREGTSTRKKMGGFLTQMLQASGGNGFQRHVHPRRYFQDRG+GPGEG+GTREECTGTEDA KEKEQTGVGSKKE DQDRLGEKGEGRGEGGGGRVKG EEEEEEAEAGERIVLQTLLEVRLDVLTRNSSRKMRVWCQETEKVPGSFL
Sbjct: 37 MHRLVAPLVVDSETATLLCQDILRASSRTASGGDSYVITTSLLVRPGNLLTPAMAASSIPISIHIGAEEGVVDIAAYNSYVLHWDMLEDGGGGAGKEGRKEARNPSEWDLPMWQSYIDGGREGTSTRKKMGGFLTQMLQASGGNGFQRHVHPRRYFQDRGKGPGEGVGTREECTGTEDAGKEKEQTGVGSKKEGDQDRLGEKGEGRGEGGGGRVKGEEEEEEEAEAGERIVLQTLLEVRLDVLTRNSSRKMRVWCQETEKVPGSFL 302
BLAST of EWM26840.1 vs. NCBI_GenBank
Match: gi|298709744|emb|CBJ31547.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 74.3294 bits (181), Expect = 1.491e-11 Identity = 44/93 (47.31%), Postives = 61/93 (65.59%), Query Frame = 0
Query: 4 LVAPLVVDSETAT-LLCQDILRASSRTASGGDSYVITTSLLVRP--GNLLTPAMAASSIPISIHIGAEEGVVDIAAYNSYVLHWDMLEDGGGG 93
L+ PLVV ET T +C DI+RASSRT+SGGD+Y + +LL RP G+LLTP+ + SS PI I + + +G V I N +VL + ++ G G
Sbjct: 91 LIDPLVVGDETLTRAVCHDIMRASSRTSSGGDAYAVMAALLSRPAEGDLLTPSGSGSS-PIGISVASADGEVVITVENRFVLRRNAMQGLGMG 182 The following BLAST results are available for this feature:
BLAST of EWM26840.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|