EWM26840.1, cds3833 (CDS) Nannochloropsis gaditana

Overview
NameEWM26840.1
Unique Namecds3833
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:196563..196659 +
Alignment locationCM002462.1:196910..197607 +
Alignment locationCM002462.1:197672..197686 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26840.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101932g1.2518.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:196563..196659 +
CM002462.1supercontigCM002462.1:196910..197607 +
CM002462.1supercontigCM002462.1:197672..197686 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM26840.1 vs. NCBI_GenBank
Match: gi|585108932|gb|EWM26840.1| (hypothetical protein Naga_101932g1 [Nannochloropsis gaditana])

HSP 1 Score: 544.273 bits (1401), Expect = 0.000e+0
Identity = 269/269 (100.00%), Postives = 269/269 (100.00%), Query Frame = 0
Query:    1 MHRLVAPLVVDSETATLLCQDILRASSRTASGGDSYVITTSLLVRPGNLLTPAMAASSIPISIHIGAEEGVVDIAAYNSYVLHWDMLEDGGGGAGKEGRKEARNPSEWDLPMWQSYIDGGREGTSTRKKMGGFLTQMLQASGGNGFQRHVHPRRYFQDRGEGPGEGIGTREECTGTEDAEKEKEQTGVGSKKESDQDRLGEKGEGRGEGGGGRVKGEEEEEEAEAGERIVLQTLLEVRLDVLTRNSSRKMRVWCQETEKVPGSFLRPGT 269
            MHRLVAPLVVDSETATLLCQDILRASSRTASGGDSYVITTSLLVRPGNLLTPAMAASSIPISIHIGAEEGVVDIAAYNSYVLHWDMLEDGGGGAGKEGRKEARNPSEWDLPMWQSYIDGGREGTSTRKKMGGFLTQMLQASGGNGFQRHVHPRRYFQDRGEGPGEGIGTREECTGTEDAEKEKEQTGVGSKKESDQDRLGEKGEGRGEGGGGRVKGEEEEEEAEAGERIVLQTLLEVRLDVLTRNSSRKMRVWCQETEKVPGSFLRPGT
Sbjct:    1 MHRLVAPLVVDSETATLLCQDILRASSRTASGGDSYVITTSLLVRPGNLLTPAMAASSIPISIHIGAEEGVVDIAAYNSYVLHWDMLEDGGGGAGKEGRKEARNPSEWDLPMWQSYIDGGREGTSTRKKMGGFLTQMLQASGGNGFQRHVHPRRYFQDRGEGPGEGIGTREECTGTEDAEKEKEQTGVGSKKESDQDRLGEKGEGRGEGGGGRVKGEEEEEEAEAGERIVLQTLLEVRLDVLTRNSSRKMRVWCQETEKVPGSFLRPGT 269          
BLAST of EWM26840.1 vs. NCBI_GenBank
Match: gi|553183967|ref|XP_005854004.1| (hypothetical protein NGA_0481900, partial [Nannochloropsis gaditana CCMP526] >gi|422295060|gb|EKU22359.1| hypothetical protein NGA_0481900, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 523.472 bits (1347), Expect = 0.000e+0
Identity = 261/266 (98.12%), Postives = 263/266 (98.87%), Query Frame = 0
Query:    1 MHRLVAPLVVDSETATLLCQDILRASSRTASGGDSYVITTSLLVRPGNLLTPAMAASSIPISIHIGAEEGVVDIAAYNSYVLHWDMLEDGGGGAGKEGRKEARNPSEWDLPMWQSYIDGGREGTSTRKKMGGFLTQMLQASGGNGFQRHVHPRRYFQDRGEGPGEGIGTREECTGTEDAEKEKEQTGVGSKKESDQDRLGEKGEGRGEGGGGRVKG-EEEEEEAEAGERIVLQTLLEVRLDVLTRNSSRKMRVWCQETEKVPGSFL 265
            MHRLVAPLVVDSETATLLCQDILRASSRTASGGDSYVITTSLLVRPGNLLTPAMAASSIPISIHIGAEEGVVDIAAYNSYVLHWDMLEDGGGGAGKEGRKEARNPSEWDLPMWQSYIDGGREGTSTRKKMGGFLTQMLQASGGNGFQRHVHPRRYFQDRG+GPGEG+GTREECTGTEDA KEKEQTGVGSKKE DQDRLGEKGEGRGEGGGGRVKG EEEEEEAEAGERIVLQTLLEVRLDVLTRNSSRKMRVWCQETEKVPGSFL
Sbjct:   37 MHRLVAPLVVDSETATLLCQDILRASSRTASGGDSYVITTSLLVRPGNLLTPAMAASSIPISIHIGAEEGVVDIAAYNSYVLHWDMLEDGGGGAGKEGRKEARNPSEWDLPMWQSYIDGGREGTSTRKKMGGFLTQMLQASGGNGFQRHVHPRRYFQDRGKGPGEGVGTREECTGTEDAGKEKEQTGVGSKKEGDQDRLGEKGEGRGEGGGGRVKGEEEEEEEAEAGERIVLQTLLEVRLDVLTRNSSRKMRVWCQETEKVPGSFL 302          
BLAST of EWM26840.1 vs. NCBI_GenBank
Match: gi|298709744|emb|CBJ31547.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 74.3294 bits (181), Expect = 1.491e-11
Identity = 44/93 (47.31%), Postives = 61/93 (65.59%), Query Frame = 0
Query:    4 LVAPLVVDSETAT-LLCQDILRASSRTASGGDSYVITTSLLVRP--GNLLTPAMAASSIPISIHIGAEEGVVDIAAYNSYVLHWDMLEDGGGG 93
            L+ PLVV  ET T  +C DI+RASSRT+SGGD+Y +  +LL RP  G+LLTP+ + SS PI I + + +G V I   N +VL  + ++  G G
Sbjct:   91 LIDPLVVGDETLTRAVCHDIMRASSRTSSGGDAYAVMAALLSRPAEGDLLTPSGSGSS-PIGISVASADGEVVITVENRFVLRRNAMQGLGMG 182          
The following BLAST results are available for this feature:
BLAST of EWM26840.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585108932|gb|EWM26840.1|0.000e+0100.00hypothetical protein Naga_101932g1 [Nannochloropsi... [more]
gi|553183967|ref|XP_005854004.1|0.000e+098.12hypothetical protein NGA_0481900, partial [Nannoch... [more]
gi|298709744|emb|CBJ31547.1|1.491e-1147.31conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3842rna3842Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications