rna384, rna384 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna384
Unique Name	rna384
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2679
Alignment location	CM002455.1:938960..942143 +

Link to JBrowse

Properties


Property Name	Value
Product	tia1 cytotoxic granule-associated rna binding protein
Orig transcript id	gnl\|cribi\|Naga_100003g102.1777.mrna
Orig protein id	gnl\|cribi\|Naga_100003g102.1777
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:938960..942143 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g102	gene370	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna384	rna384-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30260.1	cds384	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:938960..942143+
coding sequence from alignment at CM002455.1:938960..942143+

mRNA sequence

>rna384 ID=rna384|Name=rna384|organism=Nannochloropsis gaditana|type=mRNA|length=2679bp
CGCCCCTGCTCCCGTCGACTCTGAGAATCTTTGCCTTCCCGCACCCTAAC
CTTTTTTAAACTTCCCGACCCTCTACCGCGATTTGTTCATGGCTTCTTCA
AGCAACATTCTAGCCATTCATTCCTGGTCCGGATCTTGACTATGCTTTGT
TCCTATGTTGTGTCACTGTGTCATTGCGTACTGCCTGCGATTGATGTCTT
CTGGCTTGGAGAGCCTTCTCGTCATGCCAGCTAATGATAGCATGCCACCT
GTGAACATCCTCAGTCTTACCTTATTGTACGATCTATTGTCGCATAAATT
TAGACGCGTGATACTCAAGCAAAAATGGCGGGCGTTGTCGTAGATGATGG
CGTCGTGGAATCAGATTATGGCTTCATCCATCGGGTCTCCGGGCCTCTGG
TCATCGCGGACAACATGCAAGGTGCTGCAATGTATGAGCTGGTCCGTGTA
GGTCACCAGAAGCTGGTGGGAGAAATTATTAAATTGGAGGGCAACACGGC
TTCCATTCAGGTGTACGAGGACACGGCAGGGCTGACAGTGGGTGACCCGG
TCCTTCGCAAGCGCCAGCCTTTATCTCTCGAGCTCGGGCCCGGCATCATG
GGAACCATTTTCGATGGGATTCAGCGACCCTTGGAAGACATTTTCAAAAG
GGACCAGAACGTATATATTCCTCGTGGGGCCGATATTCCTTCCCTGGACC
CCTCCAAGCACTGGCAATACACGCCTGTGGCAGGCTTGCGCGAGGGCATG
GCTCTTTCAGGCGGCGACATTTTTGGAACGGTATGGGAGAATGAGATCAT
GACGTCGCACAAGATCATGGTACCCCCCAATATTTACGGTAAGGTGAAGA
AAGTGTATGGCGCAGCGGCCGACAAGAAGGACTCTTTCTCGGTGGAAGAC
ACGGTGCTGGAGGTCGAGAATGAGACAACAAAGCAAGTGCACAAGCTGAA
ACTCTCGCACTTCTGGCCTGTGCGTAGGCCCCGCCCCGTCGTGGCCAAGC
TGCCCGGTAACTCTGCGTTGACAACTGGTTTGCGCGTGGTGGACGCGATT
TTCCCCTCAGTGCAGGGAGGTACCGTGGCAGTGCCTGGGGCTTTCGGATG
CGGGAAGACAGTCATCTCCCAATCGCTTTCCAAGTTTTCAAATTCAGACG
CCATCGTGTACGTGGGCTGTGGCGAACGCGGAAATGAAATGGCGGAAGTG
TTGGCTGAGTTCCCTGAGCTGAAGCTCGATATCAACGGAAAGGAAGTGGG
GATCATGAATCGTACTTGCCTTGTGGCCAACACATCCAACATGCCTGTGG
CGGCTCGTGAAGCTTCCATCTACACGGGTATCACCCTCGCCGAGTACTTC
CGGGACATGGGCATGAATGTGTCCATGATGGCGGACTCCACTTCCCGGTG
GGCCGAGGCCTTGCGTGAAATTTCGGGCCGCTTGGGCGAGATGCCTGCGG
ACTCGGGTTATCCCGCTTATCTGGGTGCCCGCCTTGCCGCCTTCTACGAG
CGTGCCGGCCGGGTCAAAGCGCTAGGGTCTCCGGAGCGCGAGGGAACGGT
CACGGTCGTGGGCGCGGTGTCGCCGCCCGGTGGCGACTTCTCCGACCCCG
TTACGGCGGCGACGTTATCCATCGTGCAGGTCTTCTGGGGGCTCGATAAG
AAGCTGGCGCAGCGCAAGCATTTTCCCTCGGTGAACTGGCTAATTTCATA
CACTAAGTATATGCGCGTGCTCGAGCCTTACTTTAATGGCATCGACCCGC
AATACTCCGATCTGCAGAAGCGTGCCCGTGAAATTTTACAGGTGGAGGAG
AACCTGTCAGAAATTGTGCAGCTCGTAGGAAAAGAGTCACTTTCAGAAGA
TCAGAAAGTCTCTATGGAGGTAGCGCGTATCATTCGAGAAGATTTCTTGC
AGCAGAATGCATTTTCAACGTATGACTATACTTGTCCCATCCACAAGTCT
ATTGGGATGCTCCGCACCATTATCACGCTGTACAACTGTTCCCAGAAGGC
AATCGCTGATTCTCCTGCCAATCAGAAGGTCACATGGGCATATATCAAAA
CGGCATTGGCGCCAGTCATTCAAAAAGTCATTGAAGGGAAGTTTCAGGAG
CCCAAGACGGCCCCGGAAGAAATTCATGCTTACTACAACGACGTTGCCGC
GGAGGTGGAGCAGGCGTTTCAGACTTTGTCAGGGCCGTGAAAAAATTGAA
AAATGATGGAGTAAGGGTGCATGTGGATTGGCAAGCGTCCGACTTATTGT
GTATGTTGAGGCGTGGCGTGACAGAATTGTACTTAAAATGGATCGATCTG
CTCGGGTAACGCGCGGGACAAGCGATCAAAATGCTTCTTGTCCACCATCA
GCATTGCCAGCTCTGAGGCCTTGTGAAGAAGATAGAAAGGTTCTTCACCA
GTCGTGGTTCGAAGACACCAGAAAGTTGAGCCTGCTTCGACTATTTAGTC
CATTTCCGTGGGTGTTGGGAAAATGCTTGAGCGTATTTTGGACCGCATGG
GCACTATGGAGGAACGAAGAACACTCGTGATGAGACGAAACAAAGAAGTG
AAGATTTAAACGAAGCATGCAACGAAGTTCGCACACAGACGTACACGTTT
TTTTGGGGCTTGTGGGTACTTTAAGTGTATGTGCCTTGAGCATTGCGGAT
GTGCATCTGTTCTCTGAATGCAAAAAATG

protein sequence of rna384

>rna384-protein ID=rna384-protein|Name=rna384|organism=Nannochloropsis gaditana|type=polypeptide|length=664bp
MTSEDAATSTVALRAATTSEEDANRLSRSLTSLKTTSETVKNSEQVESTA
KESSREHQTQQSLAKCQQENEQENTISNRVHEDETLQEEEGTWRKEPENE
PKDDCILFIGDLARGLTEREVAQAFAAVGNVEMVDIKRDKVTMRNLGYGF
VQMSSHEQAAVAKERMQGADIQGRRIRIGWAQRNTTLFIGDLDESTNVED
LHRTFGPFGLLYTNDSYLRQGKCGKYGSVKFMSRKDAETARREMHGRVLR
DGTRPIRVVWHHPQTITKKTGLSVPLPSNEQHSRELVHIPPPPPAGVLVS
SRPYSVHVHFEADGMENLVTENLIYGLFAPFGQIIAVILPQGPGILCSDQ
NEDVSCCRRGYGFVHFTGSALGRLCAIEAIRTLQGEIVAGIRLQCAFSRK
PGGPVRASYGLTESRGTATMPLKRGHYSFPKTNMEHKLDISRLSYDLQAH
AEERPQVIVLSNLTSCSGRSINVVKHADNHMVSGDVQQWNHAPKNSSDEY
MPPFLSCQRNPSYQQQEIPQEAYSASFSCPPNFGGAYYDEIYSCNPGYTF
QEQDSYINDQSYHCVPYNAQHSYIYNCEQYTSHPPHYNAHSEHGPDSNSW
LSPITVPCSHAFHTNNRTAVAGNSQYHDISGCNYGDHYIAGATLHQSSST
QRRGASLPSGNVAI

mRNA from alignment at CM002455.1:938960..942143+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna384 ID=rna384|Name=rna384|organism=Nannochloropsis gaditana|type=mRNA|length=3184bp|location=Sequence derived from alignment at CM002455.1:938960..942143+ (Nannochloropsis gaditana)
CATTTCATCTACCAGTGCAGATACAAAATCCGTGCGCGAAAGCCTGGCAA
CATGAACAGCAAAGCTCGGgatcttccttcttcgcgcCCTGTCTCTGCTT
TCTCCAACGGCTGAGCCGCGTTAACGGCTTTCAGCGTAGACTAAATTGCG
ACCAGGCAACCAGGTTCGCAGAAGAATTTTTGCAGAAGAGAGTTTGACTT
AATCGAGCAAGCGTGAAAAAGCCTAGACGCCAGGACGAGCGATGCAAAAA
ATATGCCGTCGAACGCTTTTTTTAAAACCTGGTTTTCGAAGTAAGCCGTG
GAGTTGTTGCGACTTAGGCGGCGCTGAAGGATCCCTAGTTTGTAGGCGGC
GGATGACTAAAGTATAGCATTAGCGGCCCGCCAAAAAGCGCGGGACGTTT
TGGCTGATTCTAGTTTATTTCGTGTGTTCTTTTGATTTCTATCCTCTTAT
TTTGTCTCTCAGCTTACCAATTGGCTCATGCATCCTTCGAAATACACACG
AATTGGCACGCAAGCAATGATTCATTACGTAAATGTCTTACGAGCGCTAC
TGTCGCCCAAAACgtagagagaggaaaggtttTTATGTTCGTATGTCACG
GTGGAGCCTTCGAAGATATATGTAAACGAATGCATTGTCGTCACATGCCG
GACGACTTTTTCATAGTGACAAACGGCACTGCTGCTGCGCTTCCTTGACT
CTCCCCGAACGACCTGAGCGCAAAGTGGCAATGTCGCTAAGAACTTTAAA
GTCGGAGCCCTTATGCTTGTTTCCATTCAATTTTCGGTCATGACAAAACT
CATCTCACGGCGTTCAATTTaatagaggaaaagaagaaaaatccAACCCG
TGAGGAACAACCTAGTGGGACAGAAGCAGCAGGGATCACTTGTGTCTGTA
ATAAGGATCATATGAACACCTGGACTGAAAATTAAAAAAGGCGGGAATGC
TCCCGATGTTTGTCAGTACTCCTTCCACTATCTCATGTTTACTTGACATA
CTGTAGACGCAGGCAACAATGACGAGCGAGGATGCAGCCACCTCGACGGT
TGCTCTGAGGGCTGCCACAACGAGCGAAGAAGACGCTAATAGGCTAAGTA
GAAGTCTTACCTCTCTAAAAACGACTTCAGAGACTGTGAAAAATAGTGAG
CAAGTTGAATCCACTGCGAAGGAGAGCAGTCGGGAGCATCAAACACAACA
GTCGCTTGCGAAGTGCCAGCAGGAGAATGAGCAGGAAAACACTATTTCTA
ATCGAGTTCACGAAGATGAGACcttgcaagaggaagaggggactTGGCGG
AAGGAGCCGGAGAATGAGCCCAAGGATGATTGTATCCTCTTCATCGGGGA
TTTGGCGCGTGGCCTGACCGAAAGAGAGGTAGCACAAGCATTCGCGGCCG
TGGGCAACGTCGAAATGGTTGATATTAAGCGGGACAAGGTTACGATGCGT
AATCTGGGCTATGGCTTTGTTCAAATGAGCTCTCATGAACAAGCTGCAGT
CGCAAAAGAACGCATGCAAGGTGCAGATATTCAAGGACGACGCATTCGGA
TTGGCTGGGCGCAACGCAACACAACGCTATTTATTGGAGACTTGGACGAG
AGTACAAATGTAGAGGATCTTCATCGTACATTTGGCCCTTTTGGTCTCTT
ATACACAAATGACAGCTACCTGCGGCAGGGAAAATGTGGAAAATATGGTT
CTGTCAAGTTCATGTCCCGAAAAGATGCAGAAACTGCACGCCGAGAGATG
CATGGTCGAGTGTTAAGAGATGGGACTCGTCCGATCCGAGTGGTCTGGCA
CCATCCACAGACGATCACAAAAAAAACTGGTCTCTCTgtaccccttcctt
ctaACGAGCAGCATTCACGCGAGCTGGTGCACattccacccccaccacca
gccgGCGTCCTGGTTTCTAGCCGCCCTTATTCAGTGCACGTCCATTTTGA
GGCCGACGGGATGGAAAATCTTGTCACAGAAAATCTTATTTACGGCTTGT
TTGCACCCTTTGGACAAATAATTGCTGTAATTCTTCCTCAGGGCCCAGGA
ATCCTGTGTTCTGATCAAAATGAAGATGTTAGTTGCTGCCGGCGTGGCTA
CGGCTTTGTACATTTTACGGGCTCCGCCTTGGGGCGGCTTTGTGCAATCG
AGGCAATTCGCACTCTGCAAGGCGAAATTGTTGCTGGAATTCGTCTGCAA
TGCGCATTTAGCAGGAAGCCCGGTGGACCCGTGCGTGCTTCTTACGGTTT
GACCGAAAGCCGCGGCACTGCGACGATGCCTTTGAAGCGTGGGCATTATT
CTTTTCCTAAGACGAACATGGAGCATAAACTAGACATTTCTCGCCTCTCG
TATGATCTCCAGGCCCACGCCGAGGAACGGCCACAGGTCATCGTATTGTC
TAATTTAACGTCCTGTAGTGGCAGGTCTATAAATGTTGTAAAGCATGCTG
ACAATCATATGGTAAGCGGAGACGTTCAGCAATGGAACCATGCACCAAAA
AATTCTAGCGACGAATATATGCCGCCTTTTCTATCTTGTCAGCGCAATCC
TTCTTACCAGCAACAAGAAATACCACAAGAGGCGTATTCTGCTAGTTTTT
CATGTCCTCCAAACTTTGGTGGCGCATATTACGATGAAATTTACAGTTGT
AATCCAGGGTACACCTTTCAAGAGCAGGATTCGTATATAAATGATCAGAG
CTATCACTGTGTGCCCTACAATGCGCAGCATTCCTACATATACAATTGTG
AGCAGTACACGTCGCATCCACCGCATTATAATGCGCACTCAGAGCACGGA
CCGGACAGCAATAGCTGGCTTTCGCCAATTACTGTACCGTGCTCTCACGC
ATTTCACACAAATAACCGCACAGCCGTGGCAGGAAACAGTCAATATCACG
ATATTAGTGGATGCAATTACGGTGATCACTACATTGCTGGAGCGACATTG
CATCAATCATCAAGTACACAAAGACGCGGAGCAAGCCTTCCAAGTGGAAA
TGTAGCGATCTAGCAATTGAAGTGGGACTGACATGGATTCCTCAGATATG
TTTTCACATCGTGCTATTTGTGCTAATGTATAAGGATGTATGTGACAGTT
TCAATAGTTGAGCAATCAACAGCTAGGAAGACACTCTTGTACCAAAATAA
GAGTTGTCATCTCTTaaagaaaatgaagacaaGC

Coding sequence (CDS) from alignment at CM002455.1:938960..942143+

>rna384 ID=rna384|Name=rna384|organism=Nannochloropsis gaditana|type=CDS|length=1995bp|location=Sequence derived from alignment at CM002455.1:938960..942143+ (Nannochloropsis gaditana)
ATGACGAGCGAGGATGCAGCCACCTCGACGGTTGCTCTGAGGGCTGCCAC
AACGAGCGAAGAAGACGCTAATAGGCTAAGTAGAAGTCTTACCTCTCTAA
AAACGACTTCAGAGACTGTGAAAAATAGTGAGCAAGTTGAATCCACTGCG
AAGGAGAGCAGTCGGGAGCATCAAACACAACAGTCGCTTGCGAAGTGCCA
GCAGGAGAATGAGCAGGAAAACACTATTTCTAATCGAGTTCACGAAGATG
AGACcttgcaagaggaagaggggactTGGCGGAAGGAGCCGGAGAATGAG
CCCAAGGATGATTGTATCCTCTTCATCGGGGATTTGGCGCGTGGCCTGAC
CGAAAGAGAGGTAGCACAAGCATTCGCGGCCGTGGGCAACGTCGAAATGG
TTGATATTAAGCGGGACAAGGTTACGATGCGTAATCTGGGCTATGGCTTT
GTTCAAATGAGCTCTCATGAACAAGCTGCAGTCGCAAAAGAACGCATGCA
AGGTGCAGATATTCAAGGACGACGCATTCGGATTGGCTGGGCGCAACGCA
ACACAACGCTATTTATTGGAGACTTGGACGAGAGTACAAATGTAGAGGAT
CTTCATCGTACATTTGGCCCTTTTGGTCTCTTATACACAAATGACAGCTA
CCTGCGGCAGGGAAAATGTGGAAAATATGGTTCTGTCAAGTTCATGTCCC
GAAAAGATGCAGAAACTGCACGCCGAGAGATGCATGGTCGAGTGTTAAGA
GATGGGACTCGTCCGATCCGAGTGGTCTGGCACCATCCACAGACGATCAC
AAAAAAAACTGGTCTCTCTgtaccccttccttctaACGAGCAGCATTCAC
GCGAGCTGGTGCACattccacccccaccaccagccgGCGTCCTGGTTTCT
AGCCGCCCTTATTCAGTGCACGTCCATTTTGAGGCCGACGGGATGGAAAA
TCTTGTCACAGAAAATCTTATTTACGGCTTGTTTGCACCCTTTGGACAAA
TAATTGCTGTAATTCTTCCTCAGGGCCCAGGAATCCTGTGTTCTGATCAA
AATGAAGATGTTAGTTGCTGCCGGCGTGGCTACGGCTTTGTACATTTTAC
GGGCTCCGCCTTGGGGCGGCTTTGTGCAATCGAGGCAATTCGCACTCTGC
AAGGCGAAATTGTTGCTGGAATTCGTCTGCAATGCGCATTTAGCAGGAAG
CCCGGTGGACCCGTGCGTGCTTCTTACGGTTTGACCGAAAGCCGCGGCAC
TGCGACGATGCCTTTGAAGCGTGGGCATTATTCTTTTCCTAAGACGAACA
TGGAGCATAAACTAGACATTTCTCGCCTCTCGTATGATCTCCAGGCCCAC
GCCGAGGAACGGCCACAGGTCATCGTATTGTCTAATTTAACGTCCTGTAG
TGGCAGGTCTATAAATGTTGTAAAGCATGCTGACAATCATATGGTAAGCG
GAGACGTTCAGCAATGGAACCATGCACCAAAAAATTCTAGCGACGAATAT
ATGCCGCCTTTTCTATCTTGTCAGCGCAATCCTTCTTACCAGCAACAAGA
AATACCACAAGAGGCGTATTCTGCTAGTTTTTCATGTCCTCCAAACTTTG
GTGGCGCATATTACGATGAAATTTACAGTTGTAATCCAGGGTACACCTTT
CAAGAGCAGGATTCGTATATAAATGATCAGAGCTATCACTGTGTGCCCTA
CAATGCGCAGCATTCCTACATATACAATTGTGAGCAGTACACGTCGCATC
CACCGCATTATAATGCGCACTCAGAGCACGGACCGGACAGCAATAGCTGG
CTTTCGCCAATTACTGTACCGTGCTCTCACGCATTTCACACAAATAACCG
CACAGCCGTGGCAGGAAACAGTCAATATCACGATATTAGTGGATGCAATT
ACGGTGATCACTACATTGCTGGAGCGACATTGCATCAATCATCAAGTACA
CAAAGACGCGGAGCAAGCCTTCCAAGTGGAAATGTAGCGATCTAG

Synonyms

Publications