EWM30260.1, cds384 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30260.1 vs. NCBI_GenBank
Match: gi|585112919|gb|EWM30260.1| (tia1 cytotoxic granule-associated rna binding protein [Nannochloropsis gaditana]) HSP 1 Score: 1395.95 bits (3612), Expect = 0.000e+0 Identity = 664/664 (100.00%), Postives = 664/664 (100.00%), Query Frame = 0 Query: 1 MTSEDAATSTVALRAATTSEEDANRLSRSLTSLKTTSETVKNSEQVESTAKESSREHQTQQSLAKCQQENEQENTISNRVHEDETLQEEEGTWRKEPENEPKDDCILFIGDLARGLTEREVAQAFAAVGNVEMVDIKRDKVTMRNLGYGFVQMSSHEQAAVAKERMQGADIQGRRIRIGWAQRNTTLFIGDLDESTNVEDLHRTFGPFGLLYTNDSYLRQGKCGKYGSVKFMSRKDAETARREMHGRVLRDGTRPIRVVWHHPQTITKKTGLSVPLPSNEQHSRELVHIPPPPPAGVLVSSRPYSVHVHFEADGMENLVTENLIYGLFAPFGQIIAVILPQGPGILCSDQNEDVSCCRRGYGFVHFTGSALGRLCAIEAIRTLQGEIVAGIRLQCAFSRKPGGPVRASYGLTESRGTATMPLKRGHYSFPKTNMEHKLDISRLSYDLQAHAEERPQVIVLSNLTSCSGRSINVVKHADNHMVSGDVQQWNHAPKNSSDEYMPPFLSCQRNPSYQQQEIPQEAYSASFSCPPNFGGAYYDEIYSCNPGYTFQEQDSYINDQSYHCVPYNAQHSYIYNCEQYTSHPPHYNAHSEHGPDSNSWLSPITVPCSHAFHTNNRTAVAGNSQYHDISGCNYGDHYIAGATLHQSSSTQRRGASLPSGNVAI 664 MTSEDAATSTVALRAATTSEEDANRLSRSLTSLKTTSETVKNSEQVESTAKESSREHQTQQSLAKCQQENEQENTISNRVHEDETLQEEEGTWRKEPENEPKDDCILFIGDLARGLTEREVAQAFAAVGNVEMVDIKRDKVTMRNLGYGFVQMSSHEQAAVAKERMQGADIQGRRIRIGWAQRNTTLFIGDLDESTNVEDLHRTFGPFGLLYTNDSYLRQGKCGKYGSVKFMSRKDAETARREMHGRVLRDGTRPIRVVWHHPQTITKKTGLSVPLPSNEQHSRELVHIPPPPPAGVLVSSRPYSVHVHFEADGMENLVTENLIYGLFAPFGQIIAVILPQGPGILCSDQNEDVSCCRRGYGFVHFTGSALGRLCAIEAIRTLQGEIVAGIRLQCAFSRKPGGPVRASYGLTESRGTATMPLKRGHYSFPKTNMEHKLDISRLSYDLQAHAEERPQVIVLSNLTSCSGRSINVVKHADNHMVSGDVQQWNHAPKNSSDEYMPPFLSCQRNPSYQQQEIPQEAYSASFSCPPNFGGAYYDEIYSCNPGYTFQEQDSYINDQSYHCVPYNAQHSYIYNCEQYTSHPPHYNAHSEHGPDSNSWLSPITVPCSHAFHTNNRTAVAGNSQYHDISGCNYGDHYIAGATLHQSSSTQRRGASLPSGNVAI Sbjct: 1 MTSEDAATSTVALRAATTSEEDANRLSRSLTSLKTTSETVKNSEQVESTAKESSREHQTQQSLAKCQQENEQENTISNRVHEDETLQEEEGTWRKEPENEPKDDCILFIGDLARGLTEREVAQAFAAVGNVEMVDIKRDKVTMRNLGYGFVQMSSHEQAAVAKERMQGADIQGRRIRIGWAQRNTTLFIGDLDESTNVEDLHRTFGPFGLLYTNDSYLRQGKCGKYGSVKFMSRKDAETARREMHGRVLRDGTRPIRVVWHHPQTITKKTGLSVPLPSNEQHSRELVHIPPPPPAGVLVSSRPYSVHVHFEADGMENLVTENLIYGLFAPFGQIIAVILPQGPGILCSDQNEDVSCCRRGYGFVHFTGSALGRLCAIEAIRTLQGEIVAGIRLQCAFSRKPGGPVRASYGLTESRGTATMPLKRGHYSFPKTNMEHKLDISRLSYDLQAHAEERPQVIVLSNLTSCSGRSINVVKHADNHMVSGDVQQWNHAPKNSSDEYMPPFLSCQRNPSYQQQEIPQEAYSASFSCPPNFGGAYYDEIYSCNPGYTFQEQDSYINDQSYHCVPYNAQHSYIYNCEQYTSHPPHYNAHSEHGPDSNSWLSPITVPCSHAFHTNNRTAVAGNSQYHDISGCNYGDHYIAGATLHQSSSTQRRGASLPSGNVAI 664
BLAST of EWM30260.1 vs. NCBI_GenBank
Match: gi|470494062|ref|XP_004346589.1| (RNA recognition motif domain containing protein [Acanthamoeba castellanii str. Neff] >gi|440800608|gb|ELR21644.1| RNA recognition motif domain containing protein [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 177.178 bits (448), Expect = 1.650e-45 Identity = 111/299 (37.12%), Postives = 153/299 (51.17%), Query Frame = 0 Query: 103 DDCILFIGDLARGLTEREVAQAFAAVGNVEMVDIKRDKVTMRNLGYGFVQMSSHEQAAVAKERMQGADIQGRRIRIGWAQRNTTLFIGDLDESTNVEDLHRTFGPFGLLYTNDSYLRQGKCGKYGSVKFMSRKDAETARREMHGRVLRDGTRPIRVVWHHPQTITKKTGLSVPLPSNEQHSRELVHIPPPPPAGVLVSSRPYSVHVHFEADGMENLVTENLIYGLFAPFGQIIAVILPQGPGILCSDQNEDVSCCRRGYGFVHFTGSALGRLCAIEAIRTLQGEIVAGIRLQCAFSRKP 401 D+ LFIGDLARGL E ++ +AF G + V+IKRD+VT +LGYGFV + S E A AK+ M + GR IRIGWAQ+NT LFIGDLD S L F FG +Y ++++ K YG V+F RK AE A+REM+ +VL G R IR+ W + + R + VH+ FE E L TE+ + F FG +++V LP+ G L RG+GF+++ + G A AI TL + G+R+QC + +KP Sbjct: 61 DERCLFIGDLARGLNEDQLREAFDPFGVIS-VEIKRDRVTNYSLGYGFVLLKSREDAGAAKKAMHRQVVGGRAIRIGWAQKNTNLFIGDLDPSITSAQLREVFRQFGPIYEEETFV---KNRNYGFVRFRHRKHAEMAKREMNNKVL--GARAIRIGW-----------------GDANYQR-------------------HCVHIQFEPAESEAL-TESEVIAKFEEFGTVMSVNLPRNQGQL------------RGFGFIYYDDTDAGENSAARAITTLNNSPICGVRIQCNYGKKP 304
BLAST of EWM30260.1 vs. NCBI_GenBank
Match: gi|298707737|emb|CBJ26054.1| (poly(A) binding protein, cytoplasmic 4-like [Ectocarpus siliculosus]) HSP 1 Score: 145.591 bits (366), Expect = 4.732e-33 Identity = 73/161 (45.34%), Postives = 107/161 (66.46%), Query Frame = 0 Query: 103 DDCILFIGDLARGLTEREVAQAFAAVGNVEMVDIKRDKVTMRNLGYGFVQMSSHEQAAVAKERMQGADIQGRRIRIGWAQRNTTLFIGDLD-ESTNVEDLHRTFGPFGLLYTNDSYLRQGKCGKYGSVKFMSRKDAETARREMHGRVLRDGTRP-IRVVWH 261 ++C LF+GDLAR LTE ++ +AF G V V IKRD+ T +NLGYGFV++SSH++A AKE MQG ++ GRR+R+GWAQ+NT+L++G L+ + E L R F FG L + ++ G K+G VK+ R AE A++E++ R DG P + + W+ Sbjct: 203 EECNLFVGDLARNLTEEKLEKAFEQHGRVMSVSIKRDRATGKNLGYGFVKLSSHQEARAAKEAMQGVELGGRRVRVGWAQKNTSLYVGGLEGGAITTEMLVREFARFGPLDKELTTIKPG--AKFGFVKYRYRLHAEAAKKELNERPAFDGLCPSLEIEWN 361
BLAST of EWM30260.1 vs. NCBI_GenBank
Match: gi|569419397|gb|ETO28118.1| (hypothetical protein RFI_09014, partial [Reticulomyxa filosa]) HSP 1 Score: 140.198 bits (352), Expect = 1.627e-32 Identity = 100/314 (31.85%), Postives = 140/314 (44.59%), Query Frame = 0 Query: 120 EVAQAFAAVGNVEMVDIKRDKVTMRNLGYGFVQMSSHEQAAVAKERMQGADIQGRRIRIGWAQRNTTLF---------------------------IGDLDESTNVEDLHRTFGPFGLLYTNDSYLRQGKCGKYGSVKFMSRKDAETARREMHGRVL------RDGTRPIRVVWHHPQTITKKTGLSVPLPSNEQHSRELVHIPPPPPAGVLVSSRPYSVHVHFEADGMENLVTENLIYGLFAPFGQIIAVILPQGPGILCSDQNEDVSCCRRGYGFVHFTGSALGRLCAIEAIRTLQGEIVAGIRLQCAFSRK 400 ++A+ F+ G VE VDIKRDKVT NLGYGFV S E+A AK M G +I GR IRIGWAQ+NT LF +GDLD + E L F FG +Y +D+++ K YG VKF R AE A+ + G+ L + RPIR+ W T R VH+ V+ + + G + + E+ +F FG+++ V LP+ SD+ +GYGF+HF + G A AI TL + + +QC F ++ Sbjct: 2 QMAEIFSKFGAVENVDIKRDKVTKNNLGYGFVTFKSREEAEKAKRNMHGMEIGGRTIRIGWAQKNTNLFVKAFLFVCLFAKGGGVEGCKLYLLRTVVGDLDSRIDAEHLKTIFKQFGPIYNDDTFV---KNNGYGFVKFKHRTHAEKAKATLDGKFLTIPGTDQQTQRPIRIGWGDANT-----------------QRNCVHVQFDSTH---VTHHTGNSKKKKKKRGTQMDLKESDFREVFQRFGRVVKVSLPR-----FSDRK------LKGYGFIHFEENDDGEEAAARAITTLSYGAINNVVMQCNFGKR 281
BLAST of EWM30260.1 vs. NCBI_GenBank
Match: gi|569365743|gb|ETO09431.1| (hypothetical protein RFI_27944 [Reticulomyxa filosa]) HSP 1 Score: 140.198 bits (352), Expect = 2.608e-31 Identity = 101/321 (31.46%), Postives = 150/321 (46.73%), Query Frame = 0 Query: 103 DDCILFIGDLARGLTEREVAQAFAAVGNVEMVDIKRDKVTMRNLGYGFVQMSSHEQAAVAKERMQGADIQGRRIRIGWAQRNTTLFIGDL----------------DESTNVEDLHRTFGPFGLLYTNDSYLRQGKCGKYGSVKFMSRKDAETARREMHGRVLR-DGT-----RPIRVVWHHPQTITKKTGLSVPLPSNEQHSRELVHIPPPPPAGVLVSSRPYSVHVHFEADGMENLVTENLIYGLFAPFGQIIAVILPQGP-GILCSDQNEDVSCCRRGYGFVHFTGSALGRLCAIEAIRTLQGEIVAGIRLQCAFSRK 400 DD LFIGDL+R ++E + + F+ GNVE V+IKRDKVT NLGYGFV A M G ++ GR IRIGWAQ+NT LF+ + E + + L F FG +Y +D+++++ YG VKF R AE A+ + G+ L GT RPIR+ W T++ + V + +H+ + + + G++ + EN +F FG ++ V LP+ P G L +GY FVHF + G A +I TL + G+ +QC F ++ Sbjct: 214 DDTSLFIGDLSRHISEDHMREMFSKFGNVEHVEIKRDKVTKNNLGYGFVTFKVCNDAL-----MHGMELGGRPIRIGWAQKNTNLFVKRVFFFIFLTFHFFSRVLWKEIIDADHLKTIFKQFGPIYNDDTFVKK---NGYGFVKFKHRTHAEKAKAMLDGKFLTIPGTDEQTERPIRIGWGDAN--TQRNCVHVQFDGSHRHTH----------TDCVRGDHNNKNNNNNNKKGVQVDMKENDFREVFQQFGYVVKVSLPRFPDGQL------------KGYAFVHFEENDKGEESAARSITTLSHGKINGVIIQCNFGKR 502
BLAST of EWM30260.1 vs. NCBI_GenBank
Match: gi|545713400|ref|XP_005709003.1| (RNA-binding protein [Galdieria sulphuraria] >gi|452825487|gb|EME32483.1| RNA-binding protein [Galdieria sulphuraria]) HSP 1 Score: 118.242 bits (295), Expect = 2.565e-24 Identity = 83/293 (28.33%), Postives = 131/293 (44.71%), Query Frame = 0 Query: 107 LFIGDLARGLTEREVAQAFAAVGNVEMVDIKRDKVTMRNLGYGFVQMSSHEQAAVAKERMQGADIQGRRIRIGWAQRNTTLFIGDLDESTNVEDLHRTFGPFGLLYTNDSYLRQGKCGKYGSVKFMSRKDAETARREMHGRVLRDGTRPIRVVWHHPQTITKKTGLSVPLPSNEQHSRELVHIPPPPPAGVLVSSRPYSVHVHFEADGMENLVTENLIYGLFAPFGQIIAVILPQGPGILCSDQNEDVSCCRRGYGFVHFTGSALGRLCAIEAIRTLQGEIVAGIRLQCAFSR 399 +F+GDL + E + AF+ G V VD+KRDK T LGY FV E+A A + G + RRIR G QRN TL I +D N E++ TF +G L ++Y + +C YG ++F +R+DAE A++ + G + G IRV W + + + Y++ HFE + NL+T + FG + + I DQ + + G G V+FT G L A +A++ ++ ++G ++ C F + Sbjct: 179 VFVGDLGGDINEDILLDAFSRFGKVTAVDLKRDKYTGEILGYAFVYFVQEEEAQKAMKLGNGMSLMNRRIRTGCPQRNATLHIPQIDSEINDEEIKTTFRKYGELVEEETYFIR-RC--YGYIRFQAREDAERAKQHLDGATI--GKFKIRVEWANTELLR------------------------------------YAIQFHFEIE-RSNLITVESVKARMTRFGTVTKI------EIFSDDQGQ-----KTGLGRVYFTPDKEGELAASKAVKFVK--YISGTKVWCTFLK 416
BLAST of EWM30260.1 vs. NCBI_GenBank
Match: gi|255760009|ref|NP_001157550.1| (nucleolysin TIA-1 isoform 2 [Mus musculus] >gi|28386187|gb|AAH46812.1| Tia1 protein [Mus musculus]) HSP 1 Score: 104.76 bits (260), Expect = 1.293e-20 Identity = 87/309 (28.16%), Postives = 144/309 (46.60%), Query Frame = 0 Query: 107 LFIGDLARGLTEREVAQAFAAVGNVEMVDIKRDKVTMRNLGYGFVQMSSHEQAAVAKERMQGADIQGRRIRIGWA-----QRNTT-----LFIGDLDESTNVEDLHRTFGPFGLLYTNDSYLRQ----GKCGKYGSVKFMSRKDAETARREMHGRVLRDGTRPIRVVWHHPQTITKKTGLSVPLPSNEQHSRELVHIPPPPPAGVLVSSRPYSVHVHFEADGMENLVTENLIYGLFAPFGQIIAV-ILPQGPGILCSDQNEDVSCCRRGYGFVHFTGSALGRLCAIEAIRTLQGEIVAGIRLQCAFSRK 400 L++G+L+R +TE + Q F+ +G + + D T N Y FV+ H AA A M G I G+ +++ WA Q+ T +F+GDL ED+ F PFG + +D+ + + GK YG V F ++ DAE A ++M G+ L G R IR W T+K P + E ++++L + V+ S P + V+ G+ + +TE L+ F+PFGQI+ + + P +GY FV F+ A AI ++ G + G ++C + ++ Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDVRTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRI--SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL--GGRQIRTNW-----ATRKP--PAPKSTYESNTKQLSY------DEVVSQSSPNNCTVY--CGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----------------KGYSFVRFSSHE----SAAHAIVSVNGTTIEGHVVKCYWGKE 277
BLAST of EWM30260.1 vs. NCBI_GenBank
Match: gi|1195723427|ref|XP_021020071.1| (nucleolysin TIA-1 isoform X2 [Mus caroli]) HSP 1 Score: 104.76 bits (260), Expect = 1.317e-20 Identity = 87/309 (28.16%), Postives = 144/309 (46.60%), Query Frame = 0 Query: 107 LFIGDLARGLTEREVAQAFAAVGNVEMVDIKRDKVTMRNLGYGFVQMSSHEQAAVAKERMQGADIQGRRIRIGWA-----QRNTT-----LFIGDLDESTNVEDLHRTFGPFGLLYTNDSYLRQ----GKCGKYGSVKFMSRKDAETARREMHGRVLRDGTRPIRVVWHHPQTITKKTGLSVPLPSNEQHSRELVHIPPPPPAGVLVSSRPYSVHVHFEADGMENLVTENLIYGLFAPFGQIIAV-ILPQGPGILCSDQNEDVSCCRRGYGFVHFTGSALGRLCAIEAIRTLQGEIVAGIRLQCAFSRK 400 L++G+L+R +TE + Q F+ +G + + D T N Y FV+ H AA A M G I G+ +++ WA Q+ T +F+GDL ED+ F PFG + +D+ + + GK YG V F ++ DAE A ++M G+ L G R IR W T+K P + E ++++L + V+ S P + V+ G+ + +TE L+ F+PFGQI+ + + P +GY FV F+ A AI ++ G + G ++C + ++ Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDVRTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRI--SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL--GGRQIRTNW-----ATRKP--PAPKSTYESNTKQLSY------DEVVSQSSPNNCTVY--CGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----------------KGYSFVRFSSHE----SAAHAIVSVNGTTIEGHVVKCYWGKE 277
BLAST of EWM30260.1 vs. NCBI_GenBank
Match: gi|1008771041|ref|XP_015858561.1| (PREDICTED: nucleolysin TIA-1 isoform p40 isoform X3 [Peromyscus maniculatus bairdii]) HSP 1 Score: 104.76 bits (260), Expect = 1.638e-20 Identity = 87/309 (28.16%), Postives = 143/309 (46.28%), Query Frame = 0 Query: 107 LFIGDLARGLTEREVAQAFAAVGNVEMVDIKRDKVTMRNLGYGFVQMSSHEQAAVAKERMQGADIQGRRIRIGWA-----QRNTT-----LFIGDLDESTNVEDLHRTFGPFGLLYTNDSYLRQ----GKCGKYGSVKFMSRKDAETARREMHGRVLRDGTRPIRVVWHHPQTITKKTGLSVPLPSNEQHSRELVHIPPPPPAGVLVSSRPYSVHVHFEADGMENLVTENLIYGLFAPFGQIIAV-ILPQGPGILCSDQNEDVSCCRRGYGFVHFTGSALGRLCAIEAIRTLQGEIVAGIRLQCAFSRK 400 L++G+L+R +TE + Q F+ +G + + D T N Y FV+ H AA A M G I G+ +++ WA Q+ T +F+GDL ED+ F PFG + +D+ + + GK YG V F ++ DAE A ++M G+ L G R IR W T+K P + E ++++L + V+ S P + V+ G+ + +TE L+ F+PFGQI+ + + P +GY FV F A AI ++ G + G ++C + ++ Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDVRTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRI--SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL--GGRQIRTNW-----ATRKP--PAPKSTYESNTKQLSY------EEVVSQSSPSNCTVY--CGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----------------KGYSFVRFNSHE----SAAHAIVSVNGTTIEGHVVKCYWGKE 277
BLAST of EWM30260.1 vs. NCBI_GenBank
Match: gi|148666754|gb|EDK99170.1| (cytotoxic granule-associated RNA binding protein 1, isoform CRA_d, partial [Mus musculus]) HSP 1 Score: 104.76 bits (260), Expect = 1.717e-20 Identity = 87/309 (28.16%), Postives = 144/309 (46.60%), Query Frame = 0 Query: 107 LFIGDLARGLTEREVAQAFAAVGNVEMVDIKRDKVTMRNLGYGFVQMSSHEQAAVAKERMQGADIQGRRIRIGWA-----QRNTT-----LFIGDLDESTNVEDLHRTFGPFGLLYTNDSYLRQ----GKCGKYGSVKFMSRKDAETARREMHGRVLRDGTRPIRVVWHHPQTITKKTGLSVPLPSNEQHSRELVHIPPPPPAGVLVSSRPYSVHVHFEADGMENLVTENLIYGLFAPFGQIIAV-ILPQGPGILCSDQNEDVSCCRRGYGFVHFTGSALGRLCAIEAIRTLQGEIVAGIRLQCAFSRK 400 L++G+L+R +TE + Q F+ +G + + D T N Y FV+ H AA A M G I G+ +++ WA Q+ T +F+GDL ED+ F PFG + +D+ + + GK YG V F ++ DAE A ++M G+ L G R IR W T+K P + E ++++L + V+ S P + V+ G+ + +TE L+ F+PFGQI+ + + P +GY FV F+ A AI ++ G + G ++C + ++ Sbjct: 17 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDVRTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRI--SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL--GGRQIRTNW-----ATRKP--PAPKSTYESNTKQLSY------DEVVSQSSPNNCTVY--CGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----------------KGYSFVRFSSHE----SAAHAIVSVNGTTIEGHVVKCYWGKE 285 The following BLAST results are available for this feature:
BLAST of EWM30260.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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