EWM30260.1, cds384 (CDS) Nannochloropsis gaditana

Overview
NameEWM30260.1
Unique Namecds384
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:939978..941972 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30260.1
Producttia1 cytotoxic granule-associated rna binding protein
Orig transcript idgnl|cribi|Naga_100003g102.1777.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:939978..941972 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
Homology
BLAST of EWM30260.1 vs. NCBI_GenBank
Match: gi|585112919|gb|EWM30260.1| (tia1 cytotoxic granule-associated rna binding protein [Nannochloropsis gaditana])

HSP 1 Score: 1395.95 bits (3612), Expect = 0.000e+0
Identity = 664/664 (100.00%), Postives = 664/664 (100.00%), Query Frame = 0
Query:    1 MTSEDAATSTVALRAATTSEEDANRLSRSLTSLKTTSETVKNSEQVESTAKESSREHQTQQSLAKCQQENEQENTISNRVHEDETLQEEEGTWRKEPENEPKDDCILFIGDLARGLTEREVAQAFAAVGNVEMVDIKRDKVTMRNLGYGFVQMSSHEQAAVAKERMQGADIQGRRIRIGWAQRNTTLFIGDLDESTNVEDLHRTFGPFGLLYTNDSYLRQGKCGKYGSVKFMSRKDAETARREMHGRVLRDGTRPIRVVWHHPQTITKKTGLSVPLPSNEQHSRELVHIPPPPPAGVLVSSRPYSVHVHFEADGMENLVTENLIYGLFAPFGQIIAVILPQGPGILCSDQNEDVSCCRRGYGFVHFTGSALGRLCAIEAIRTLQGEIVAGIRLQCAFSRKPGGPVRASYGLTESRGTATMPLKRGHYSFPKTNMEHKLDISRLSYDLQAHAEERPQVIVLSNLTSCSGRSINVVKHADNHMVSGDVQQWNHAPKNSSDEYMPPFLSCQRNPSYQQQEIPQEAYSASFSCPPNFGGAYYDEIYSCNPGYTFQEQDSYINDQSYHCVPYNAQHSYIYNCEQYTSHPPHYNAHSEHGPDSNSWLSPITVPCSHAFHTNNRTAVAGNSQYHDISGCNYGDHYIAGATLHQSSSTQRRGASLPSGNVAI 664
            MTSEDAATSTVALRAATTSEEDANRLSRSLTSLKTTSETVKNSEQVESTAKESSREHQTQQSLAKCQQENEQENTISNRVHEDETLQEEEGTWRKEPENEPKDDCILFIGDLARGLTEREVAQAFAAVGNVEMVDIKRDKVTMRNLGYGFVQMSSHEQAAVAKERMQGADIQGRRIRIGWAQRNTTLFIGDLDESTNVEDLHRTFGPFGLLYTNDSYLRQGKCGKYGSVKFMSRKDAETARREMHGRVLRDGTRPIRVVWHHPQTITKKTGLSVPLPSNEQHSRELVHIPPPPPAGVLVSSRPYSVHVHFEADGMENLVTENLIYGLFAPFGQIIAVILPQGPGILCSDQNEDVSCCRRGYGFVHFTGSALGRLCAIEAIRTLQGEIVAGIRLQCAFSRKPGGPVRASYGLTESRGTATMPLKRGHYSFPKTNMEHKLDISRLSYDLQAHAEERPQVIVLSNLTSCSGRSINVVKHADNHMVSGDVQQWNHAPKNSSDEYMPPFLSCQRNPSYQQQEIPQEAYSASFSCPPNFGGAYYDEIYSCNPGYTFQEQDSYINDQSYHCVPYNAQHSYIYNCEQYTSHPPHYNAHSEHGPDSNSWLSPITVPCSHAFHTNNRTAVAGNSQYHDISGCNYGDHYIAGATLHQSSSTQRRGASLPSGNVAI
Sbjct:    1 MTSEDAATSTVALRAATTSEEDANRLSRSLTSLKTTSETVKNSEQVESTAKESSREHQTQQSLAKCQQENEQENTISNRVHEDETLQEEEGTWRKEPENEPKDDCILFIGDLARGLTEREVAQAFAAVGNVEMVDIKRDKVTMRNLGYGFVQMSSHEQAAVAKERMQGADIQGRRIRIGWAQRNTTLFIGDLDESTNVEDLHRTFGPFGLLYTNDSYLRQGKCGKYGSVKFMSRKDAETARREMHGRVLRDGTRPIRVVWHHPQTITKKTGLSVPLPSNEQHSRELVHIPPPPPAGVLVSSRPYSVHVHFEADGMENLVTENLIYGLFAPFGQIIAVILPQGPGILCSDQNEDVSCCRRGYGFVHFTGSALGRLCAIEAIRTLQGEIVAGIRLQCAFSRKPGGPVRASYGLTESRGTATMPLKRGHYSFPKTNMEHKLDISRLSYDLQAHAEERPQVIVLSNLTSCSGRSINVVKHADNHMVSGDVQQWNHAPKNSSDEYMPPFLSCQRNPSYQQQEIPQEAYSASFSCPPNFGGAYYDEIYSCNPGYTFQEQDSYINDQSYHCVPYNAQHSYIYNCEQYTSHPPHYNAHSEHGPDSNSWLSPITVPCSHAFHTNNRTAVAGNSQYHDISGCNYGDHYIAGATLHQSSSTQRRGASLPSGNVAI 664          
BLAST of EWM30260.1 vs. NCBI_GenBank
Match: gi|470494062|ref|XP_004346589.1| (RNA recognition motif domain containing protein [Acanthamoeba castellanii str. Neff] >gi|440800608|gb|ELR21644.1| RNA recognition motif domain containing protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 177.178 bits (448), Expect = 1.650e-45
Identity = 111/299 (37.12%), Postives = 153/299 (51.17%), Query Frame = 0
Query:  103 DDCILFIGDLARGLTEREVAQAFAAVGNVEMVDIKRDKVTMRNLGYGFVQMSSHEQAAVAKERMQGADIQGRRIRIGWAQRNTTLFIGDLDESTNVEDLHRTFGPFGLLYTNDSYLRQGKCGKYGSVKFMSRKDAETARREMHGRVLRDGTRPIRVVWHHPQTITKKTGLSVPLPSNEQHSRELVHIPPPPPAGVLVSSRPYSVHVHFEADGMENLVTENLIYGLFAPFGQIIAVILPQGPGILCSDQNEDVSCCRRGYGFVHFTGSALGRLCAIEAIRTLQGEIVAGIRLQCAFSRKP 401
            D+  LFIGDLARGL E ++ +AF   G +  V+IKRD+VT  +LGYGFV + S E A  AK+ M    + GR IRIGWAQ+NT LFIGDLD S     L   F  FG +Y  ++++   K   YG V+F  RK AE A+REM+ +VL  G R IR+ W                  +  + R                   + VH+ FE    E L TE+ +   F  FG +++V LP+  G L            RG+GF+++  +  G   A  AI TL    + G+R+QC + +KP
Sbjct:   61 DERCLFIGDLARGLNEDQLREAFDPFGVIS-VEIKRDRVTNYSLGYGFVLLKSREDAGAAKKAMHRQVVGGRAIRIGWAQKNTNLFIGDLDPSITSAQLREVFRQFGPIYEEETFV---KNRNYGFVRFRHRKHAEMAKREMNNKVL--GARAIRIGW-----------------GDANYQR-------------------HCVHIQFEPAESEAL-TESEVIAKFEEFGTVMSVNLPRNQGQL------------RGFGFIYYDDTDAGENSAARAITTLNNSPICGVRIQCNYGKKP 304          
BLAST of EWM30260.1 vs. NCBI_GenBank
Match: gi|298707737|emb|CBJ26054.1| (poly(A) binding protein, cytoplasmic 4-like [Ectocarpus siliculosus])

HSP 1 Score: 145.591 bits (366), Expect = 4.732e-33
Identity = 73/161 (45.34%), Postives = 107/161 (66.46%), Query Frame = 0
Query:  103 DDCILFIGDLARGLTEREVAQAFAAVGNVEMVDIKRDKVTMRNLGYGFVQMSSHEQAAVAKERMQGADIQGRRIRIGWAQRNTTLFIGDLD-ESTNVEDLHRTFGPFGLLYTNDSYLRQGKCGKYGSVKFMSRKDAETARREMHGRVLRDGTRP-IRVVWH 261
            ++C LF+GDLAR LTE ++ +AF   G V  V IKRD+ T +NLGYGFV++SSH++A  AKE MQG ++ GRR+R+GWAQ+NT+L++G L+  +   E L R F  FG L    + ++ G   K+G VK+  R  AE A++E++ R   DG  P + + W+
Sbjct:  203 EECNLFVGDLARNLTEEKLEKAFEQHGRVMSVSIKRDRATGKNLGYGFVKLSSHQEARAAKEAMQGVELGGRRVRVGWAQKNTSLYVGGLEGGAITTEMLVREFARFGPLDKELTTIKPG--AKFGFVKYRYRLHAEAAKKELNERPAFDGLCPSLEIEWN 361          
BLAST of EWM30260.1 vs. NCBI_GenBank
Match: gi|569419397|gb|ETO28118.1| (hypothetical protein RFI_09014, partial [Reticulomyxa filosa])

HSP 1 Score: 140.198 bits (352), Expect = 1.627e-32
Identity = 100/314 (31.85%), Postives = 140/314 (44.59%), Query Frame = 0
Query:  120 EVAQAFAAVGNVEMVDIKRDKVTMRNLGYGFVQMSSHEQAAVAKERMQGADIQGRRIRIGWAQRNTTLF---------------------------IGDLDESTNVEDLHRTFGPFGLLYTNDSYLRQGKCGKYGSVKFMSRKDAETARREMHGRVL------RDGTRPIRVVWHHPQTITKKTGLSVPLPSNEQHSRELVHIPPPPPAGVLVSSRPYSVHVHFEADGMENLVTENLIYGLFAPFGQIIAVILPQGPGILCSDQNEDVSCCRRGYGFVHFTGSALGRLCAIEAIRTLQGEIVAGIRLQCAFSRK 400
            ++A+ F+  G VE VDIKRDKVT  NLGYGFV   S E+A  AK  M G +I GR IRIGWAQ+NT LF                           +GDLD   + E L   F  FG +Y +D+++   K   YG VKF  R  AE A+  + G+ L      +   RPIR+ W    T                  R  VH+         V+    +     +  G +  + E+    +F  FG+++ V LP+      SD+        +GYGF+HF  +  G   A  AI TL    +  + +QC F ++
Sbjct:    2 QMAEIFSKFGAVENVDIKRDKVTKNNLGYGFVTFKSREEAEKAKRNMHGMEIGGRTIRIGWAQKNTNLFVKAFLFVCLFAKGGGVEGCKLYLLRTVVGDLDSRIDAEHLKTIFKQFGPIYNDDTFV---KNNGYGFVKFKHRTHAEKAKATLDGKFLTIPGTDQQTQRPIRIGWGDANT-----------------QRNCVHVQFDSTH---VTHHTGNSKKKKKKRGTQMDLKESDFREVFQRFGRVVKVSLPR-----FSDRK------LKGYGFIHFEENDDGEEAAARAITTLSYGAINNVVMQCNFGKR 281          
BLAST of EWM30260.1 vs. NCBI_GenBank
Match: gi|569365743|gb|ETO09431.1| (hypothetical protein RFI_27944 [Reticulomyxa filosa])

HSP 1 Score: 140.198 bits (352), Expect = 2.608e-31
Identity = 101/321 (31.46%), Postives = 150/321 (46.73%), Query Frame = 0
Query:  103 DDCILFIGDLARGLTEREVAQAFAAVGNVEMVDIKRDKVTMRNLGYGFVQMSSHEQAAVAKERMQGADIQGRRIRIGWAQRNTTLFIGDL----------------DESTNVEDLHRTFGPFGLLYTNDSYLRQGKCGKYGSVKFMSRKDAETARREMHGRVLR-DGT-----RPIRVVWHHPQTITKKTGLSVPLPSNEQHSRELVHIPPPPPAGVLVSSRPYSVHVHFEADGMENLVTENLIYGLFAPFGQIIAVILPQGP-GILCSDQNEDVSCCRRGYGFVHFTGSALGRLCAIEAIRTLQGEIVAGIRLQCAFSRK 400
            DD  LFIGDL+R ++E  + + F+  GNVE V+IKRDKVT  NLGYGFV       A      M G ++ GR IRIGWAQ+NT LF+  +                 E  + + L   F  FG +Y +D+++++     YG VKF  R  AE A+  + G+ L   GT     RPIR+ W      T++  + V    + +H+              +        + +    G++  + EN    +F  FG ++ V LP+ P G L            +GY FVHF  +  G   A  +I TL    + G+ +QC F ++
Sbjct:  214 DDTSLFIGDLSRHISEDHMREMFSKFGNVEHVEIKRDKVTKNNLGYGFVTFKVCNDAL-----MHGMELGGRPIRIGWAQKNTNLFVKRVFFFIFLTFHFFSRVLWKEIIDADHLKTIFKQFGPIYNDDTFVKK---NGYGFVKFKHRTHAEKAKAMLDGKFLTIPGTDEQTERPIRIGWGDAN--TQRNCVHVQFDGSHRHTH----------TDCVRGDHNNKNNNNNNKKGVQVDMKENDFREVFQQFGYVVKVSLPRFPDGQL------------KGYAFVHFEENDKGEESAARSITTLSHGKINGVIIQCNFGKR 502          
BLAST of EWM30260.1 vs. NCBI_GenBank
Match: gi|545713400|ref|XP_005709003.1| (RNA-binding protein [Galdieria sulphuraria] >gi|452825487|gb|EME32483.1| RNA-binding protein [Galdieria sulphuraria])

HSP 1 Score: 118.242 bits (295), Expect = 2.565e-24
Identity = 83/293 (28.33%), Postives = 131/293 (44.71%), Query Frame = 0
Query:  107 LFIGDLARGLTEREVAQAFAAVGNVEMVDIKRDKVTMRNLGYGFVQMSSHEQAAVAKERMQGADIQGRRIRIGWAQRNTTLFIGDLDESTNVEDLHRTFGPFGLLYTNDSYLRQGKCGKYGSVKFMSRKDAETARREMHGRVLRDGTRPIRVVWHHPQTITKKTGLSVPLPSNEQHSRELVHIPPPPPAGVLVSSRPYSVHVHFEADGMENLVTENLIYGLFAPFGQIIAVILPQGPGILCSDQNEDVSCCRRGYGFVHFTGSALGRLCAIEAIRTLQGEIVAGIRLQCAFSR 399
            +F+GDL   + E  +  AF+  G V  VD+KRDK T   LGY FV     E+A  A +   G  +  RRIR G  QRN TL I  +D   N E++  TF  +G L   ++Y  + +C  YG ++F +R+DAE A++ + G  +  G   IRV W + + +                                     Y++  HFE +   NL+T   +      FG +  +       I   DQ +     + G G V+FT    G L A +A++ ++   ++G ++ C F +
Sbjct:  179 VFVGDLGGDINEDILLDAFSRFGKVTAVDLKRDKYTGEILGYAFVYFVQEEEAQKAMKLGNGMSLMNRRIRTGCPQRNATLHIPQIDSEINDEEIKTTFRKYGELVEEETYFIR-RC--YGYIRFQAREDAERAKQHLDGATI--GKFKIRVEWANTELLR------------------------------------YAIQFHFEIE-RSNLITVESVKARMTRFGTVTKI------EIFSDDQGQ-----KTGLGRVYFTPDKEGELAASKAVKFVK--YISGTKVWCTFLK 416          
BLAST of EWM30260.1 vs. NCBI_GenBank
Match: gi|255760009|ref|NP_001157550.1| (nucleolysin TIA-1 isoform 2 [Mus musculus] >gi|28386187|gb|AAH46812.1| Tia1 protein [Mus musculus])

HSP 1 Score: 104.76 bits (260), Expect = 1.293e-20
Identity = 87/309 (28.16%), Postives = 144/309 (46.60%), Query Frame = 0
Query:  107 LFIGDLARGLTEREVAQAFAAVGNVEMVDIKRDKVTMRNLGYGFVQMSSHEQAAVAKERMQGADIQGRRIRIGWA-----QRNTT-----LFIGDLDESTNVEDLHRTFGPFGLLYTNDSYLRQ----GKCGKYGSVKFMSRKDAETARREMHGRVLRDGTRPIRVVWHHPQTITKKTGLSVPLPSNEQHSRELVHIPPPPPAGVLVSSRPYSVHVHFEADGMENLVTENLIYGLFAPFGQIIAV-ILPQGPGILCSDQNEDVSCCRRGYGFVHFTGSALGRLCAIEAIRTLQGEIVAGIRLQCAFSRK 400
            L++G+L+R +TE  + Q F+ +G  +   +  D  T  N  Y FV+   H  AA A   M G  I G+ +++ WA     Q+  T     +F+GDL      ED+   F PFG +  +D+ + +    GK   YG V F ++ DAE A ++M G+ L  G R IR  W      T+K     P  + E ++++L +        V+  S P +  V+    G+ + +TE L+   F+PFGQI+ + + P                  +GY FV F+        A  AI ++ G  + G  ++C + ++
Sbjct:    9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDVRTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRI--SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL--GGRQIRTNW-----ATRKP--PAPKSTYESNTKQLSY------DEVVSQSSPNNCTVY--CGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----------------KGYSFVRFSSHE----SAAHAIVSVNGTTIEGHVVKCYWGKE 277          
BLAST of EWM30260.1 vs. NCBI_GenBank
Match: gi|1195723427|ref|XP_021020071.1| (nucleolysin TIA-1 isoform X2 [Mus caroli])

HSP 1 Score: 104.76 bits (260), Expect = 1.317e-20
Identity = 87/309 (28.16%), Postives = 144/309 (46.60%), Query Frame = 0
Query:  107 LFIGDLARGLTEREVAQAFAAVGNVEMVDIKRDKVTMRNLGYGFVQMSSHEQAAVAKERMQGADIQGRRIRIGWA-----QRNTT-----LFIGDLDESTNVEDLHRTFGPFGLLYTNDSYLRQ----GKCGKYGSVKFMSRKDAETARREMHGRVLRDGTRPIRVVWHHPQTITKKTGLSVPLPSNEQHSRELVHIPPPPPAGVLVSSRPYSVHVHFEADGMENLVTENLIYGLFAPFGQIIAV-ILPQGPGILCSDQNEDVSCCRRGYGFVHFTGSALGRLCAIEAIRTLQGEIVAGIRLQCAFSRK 400
            L++G+L+R +TE  + Q F+ +G  +   +  D  T  N  Y FV+   H  AA A   M G  I G+ +++ WA     Q+  T     +F+GDL      ED+   F PFG +  +D+ + +    GK   YG V F ++ DAE A ++M G+ L  G R IR  W      T+K     P  + E ++++L +        V+  S P +  V+    G+ + +TE L+   F+PFGQI+ + + P                  +GY FV F+        A  AI ++ G  + G  ++C + ++
Sbjct:    9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDVRTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRI--SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL--GGRQIRTNW-----ATRKP--PAPKSTYESNTKQLSY------DEVVSQSSPNNCTVY--CGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----------------KGYSFVRFSSHE----SAAHAIVSVNGTTIEGHVVKCYWGKE 277          
BLAST of EWM30260.1 vs. NCBI_GenBank
Match: gi|1008771041|ref|XP_015858561.1| (PREDICTED: nucleolysin TIA-1 isoform p40 isoform X3 [Peromyscus maniculatus bairdii])

HSP 1 Score: 104.76 bits (260), Expect = 1.638e-20
Identity = 87/309 (28.16%), Postives = 143/309 (46.28%), Query Frame = 0
Query:  107 LFIGDLARGLTEREVAQAFAAVGNVEMVDIKRDKVTMRNLGYGFVQMSSHEQAAVAKERMQGADIQGRRIRIGWA-----QRNTT-----LFIGDLDESTNVEDLHRTFGPFGLLYTNDSYLRQ----GKCGKYGSVKFMSRKDAETARREMHGRVLRDGTRPIRVVWHHPQTITKKTGLSVPLPSNEQHSRELVHIPPPPPAGVLVSSRPYSVHVHFEADGMENLVTENLIYGLFAPFGQIIAV-ILPQGPGILCSDQNEDVSCCRRGYGFVHFTGSALGRLCAIEAIRTLQGEIVAGIRLQCAFSRK 400
            L++G+L+R +TE  + Q F+ +G  +   +  D  T  N  Y FV+   H  AA A   M G  I G+ +++ WA     Q+  T     +F+GDL      ED+   F PFG +  +D+ + +    GK   YG V F ++ DAE A ++M G+ L  G R IR  W      T+K     P  + E ++++L +        V+  S P +  V+    G+ + +TE L+   F+PFGQI+ + + P                  +GY FV F         A  AI ++ G  + G  ++C + ++
Sbjct:    9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDVRTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRI--SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL--GGRQIRTNW-----ATRKP--PAPKSTYESNTKQLSY------EEVVSQSSPSNCTVY--CGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----------------KGYSFVRFNSHE----SAAHAIVSVNGTTIEGHVVKCYWGKE 277          
BLAST of EWM30260.1 vs. NCBI_GenBank
Match: gi|148666754|gb|EDK99170.1| (cytotoxic granule-associated RNA binding protein 1, isoform CRA_d, partial [Mus musculus])

HSP 1 Score: 104.76 bits (260), Expect = 1.717e-20
Identity = 87/309 (28.16%), Postives = 144/309 (46.60%), Query Frame = 0
Query:  107 LFIGDLARGLTEREVAQAFAAVGNVEMVDIKRDKVTMRNLGYGFVQMSSHEQAAVAKERMQGADIQGRRIRIGWA-----QRNTT-----LFIGDLDESTNVEDLHRTFGPFGLLYTNDSYLRQ----GKCGKYGSVKFMSRKDAETARREMHGRVLRDGTRPIRVVWHHPQTITKKTGLSVPLPSNEQHSRELVHIPPPPPAGVLVSSRPYSVHVHFEADGMENLVTENLIYGLFAPFGQIIAV-ILPQGPGILCSDQNEDVSCCRRGYGFVHFTGSALGRLCAIEAIRTLQGEIVAGIRLQCAFSRK 400
            L++G+L+R +TE  + Q F+ +G  +   +  D  T  N  Y FV+   H  AA A   M G  I G+ +++ WA     Q+  T     +F+GDL      ED+   F PFG +  +D+ + +    GK   YG V F ++ DAE A ++M G+ L  G R IR  W      T+K     P  + E ++++L +        V+  S P +  V+    G+ + +TE L+   F+PFGQI+ + + P                  +GY FV F+        A  AI ++ G  + G  ++C + ++
Sbjct:   17 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDVRTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRI--SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL--GGRQIRTNW-----ATRKP--PAPKSTYESNTKQLSY------DEVVSQSSPNNCTVY--CGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----------------KGYSFVRFSSHE----SAAHAIVSVNGTTIEGHVVKCYWGKE 285          
The following BLAST results are available for this feature:
BLAST of EWM30260.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112919|gb|EWM30260.1|0.000e+0100.00tia1 cytotoxic granule-associated rna binding prot... [more]
gi|470494062|ref|XP_004346589.1|1.650e-4537.12RNA recognition motif domain containing protein [A... [more]
gi|298707737|emb|CBJ26054.1|4.732e-3345.34poly(A) binding protein, cytoplasmic 4-like [Ectoc... [more]
gi|569419397|gb|ETO28118.1|1.627e-3231.85hypothetical protein RFI_09014, partial [Reticulom... [more]
gi|569365743|gb|ETO09431.1|2.608e-3131.46hypothetical protein RFI_27944 [Reticulomyxa filos... [more]
gi|545713400|ref|XP_005709003.1|2.565e-2428.33RNA-binding protein [Galdieria sulphuraria] >gi|45... [more]
gi|255760009|ref|NP_001157550.1|1.293e-2028.16nucleolysin TIA-1 isoform 2 [Mus musculus] >gi|283... [more]
gi|1195723427|ref|XP_021020071.1|1.317e-2028.16nucleolysin TIA-1 isoform X2 [Mus caroli][more]
gi|1008771041|ref|XP_015858561.1|1.638e-2028.16PREDICTED: nucleolysin TIA-1 isoform p40 isoform X... [more]
gi|148666754|gb|EDK99170.1|1.717e-2028.16cytotoxic granule-associated RNA binding protein 1... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna384rna384Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications