rna3838, rna3838 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3838
Unique Name	rna3838
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1293
Alignment location	CM002462.1:179102..182213 -

Link to JBrowse

Properties


Property Name	Value
Product	grip and coiled-coil domain-containing protein
Orig transcript id	gnl\|cribi\|Naga_100263g4.895.mrna
Orig protein id	gnl\|cribi\|Naga_100263g4.895
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:179102..182213 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100263g4	gene3694	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26846.1	cds3829	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3838	rna3838-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:179102..182213-
coding sequence from alignment at CM002462.1:179102..182213-

mRNA sequence

>rna3838 ID=rna3838|Name=rna3838|organism=Nannochloropsis gaditana|type=mRNA|length=1293bp
GATAACAAGGCACACCCCTCCCCATAAACACCACCTCGCAGGCCTTCCAA
GACGCAGTGATAGACATCCGAGTCGCGTTGCAAGATTCCGACACGACGGG
CGTGACTGGAGACAAAAAGTGGACAGGCATTGTTACAAGGCTGCTCCGTT
GAAGATATCTCCGAAGAAGGTTACAAACGTAAGTATGGTCGTCTCTGTCA
GAGGTGGCCTATGGGGAATGGGGGATCTTCTGCTTTGGTGCTTTGTGAAT
TTCTTCTTTGTACCCGCCTTGTGCTCGTCGCCTCCCTCTACTAGTGTGCC
AAATGGCGGTGGGACCGCCCCAGGAGGTTTCTCATCGAGAGGTGAGCTAC
CGCAATTGGATTTTGCGCGTCTTGGAGCCTACCGCTTCGCCTCACCAAGT
CTGTGCGTCAGGACACGACGAGCCTGCTACGTATTGTGCGCGCGGCCGGA
GCAGCATCCTCTGCAGGACAACTACGAGGTTGACCCCTTGTCTAGAGATA
CCATCACCATACCTGCGACAACAAGCAGTAGTACAGGTAGAGGCGTCCAC
CTGGTGTCGCCAGGGATCGGTTGCTTGTGTCAGGGACAAGATGGAGACGT
GCTCGCCCTTCTGGGACTCATGCGTCGGGAGGCGGAAAAATATTTACACG
CCTTTGGGCACCCGATCTCGGCCCGGGTGCTGGCTCAGCGCGTAGGGACA
ATTTTAGGCGGTAAAGGGCAAGAAACATGGTCCCGACCTCTGTGCTGCAT
TTCGGTGCTCATGTCTTCTTCAGGTACTGCTACGAGCGCAGCCGCCATTC
CTTCTTCCCCTTTCCGTTCCTCATCACTGAGGGGCGAAGCAGAAATGTAC
CAGATCGATCCCACTGGGTTAGTCTTCAGCATACGAGGACAGGTTTTCGG
CGGCAAAGACGCGACAGATCCGGTGGCACATGACCTGCAGGAATGGCTTG
GCTGCTTTCTTCAGGAAAGGGATGCCGAGGGGGAGAAAGGACGAGAGGAA
GGGGAAGAAAACGAACAGGAGATATGGACAGCCCTATGGACGGGCATGAA
GAAATTCATACCAAACGTAGCACAGCATCCCGAGTCAGTGGAATGTGCTC
GAGCGGCTGCTTCCTCTTTTCGACGTTTGGGTCCGGTGACCGTAGTGGTC
AAAGGACCGGAGGGCGTGAGGGAGGAGTAAGCATGTGGACAAAGCAACAA
TCGCATGTATGCATGGGTGATGAACGCACCACCCTCATGTATCCACGCTG
GAGATGACCGCAGGACGAAGCAATAAAGCATAGATGTCATACA

protein sequence of rna3838

>rna3838-protein ID=rna3838-protein|Name=rna3838|organism=Nannochloropsis gaditana|type=polypeptide|length=975bp
MEAQGTGPSSPTRVTTRPIKDPADDPLSASTPGLTHDNSTSTSEDSGGRE
HKPKSTSTAGMAAATAASLFRGLHGGNGLKNNSHGTNLTTSPLRNKGIEA
LSSFSKGILKISQHHQYASSLGKTSTSTAPDSPCQDEQRVIGPDISMEDL
MLACTKLKRRVKVMETQTRELKEANGRTEVERDEMIDFLYRDVLQREDVP
PHGTQASLPALRREWAQQEEERHLTLQAMQQQHREYVLANKAAPASTLAI
ALPSIPKPQEEHDESSLATVREQNVDDNELCRVQNELEDAKRALAQTEEE
LQALRRQVAEQNKTAAEERDTARKLKLEVGKMQESHAKEVTRLRRQIRPQ
GEDGAPQAGPETPASEAGREGKTGAERERAEKTASFPRDRAMDEADELEK
ELAASSLILQEKDSAIDALHRAMSQDQSERLTLESSLRAAQSKVDSLTQE
IASISGLLRGAEQEKENLRQRDAEQRAELDRGCQQLAEKTGVLLRVRSDL
EKTEQSCALKTAQMAQLETGVQEMVLEMKRLRESVEEGEMARARLSREVE
SRQQACVKLEKALMETKEILRKEKEAWESGAQAQRDESRQQAASQQQTFE
EELMLYHKESQKKSALAREIIADKDRQLGECVQKIMALEEEIASGSYTDR
KIMELATVQSQRDSHHRAELESCKVSLKKLQEALATKDLEVGRLTALQAT
LNQERVALRRAQQREGCNLEYLKNVVVDYLSFPPGALSEKASLERVLATL
LAFSPQDRKKIAEGREGGQGGGIGWLLTAPRRPVKHIAPGAHAVSVSLVD
SRNHDHGVEAAKNKAGVHVGGRGGPLGDKGNGQSKLPSPLRVGRVEVVGG
GKSGSDGKEECGKRDGGTMTKPQSAAGAVARVGFEQGFGSLSGSGGGKSV
EGSVGSLSLSQSDFQSLSEHADTGREGGRGRSSASFLGEPRYSTSSAGGL
TTRSSGTESEDEEGGRPKRGPVLSF

mRNA from alignment at CM002462.1:179102..182213-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3838 ID=rna3838|Name=rna3838|organism=Nannochloropsis gaditana|type=mRNA|length=3112bp|location=Sequence derived from alignment at CM002462.1:179102..182213- (Nannochloropsis gaditana)
AACAGGATCGTGTTGTTCCCTCAGGGGTCACTATATGGCACGATGGAGGC
TCAAGGGACAGGCCCATCAAGTCCCACAAGGGTAACAACGAGACCAATAA
AAGATCCGGCAGACGACCCTTTATCAGCATCTACACCCGGTTTGACGCAC
GATAATAGCACCAGCACGTCGGAAGACAGTGGAGGACGGGAGCACAAACC
CAAATCGACGAGCACGGCGGGTATGGCGGCAGCGACGGCAGCTTCCCTTT
TCAGGGGTCTTCACGGCGGGAATGGCCTTAAAAACAATAGCCACGGCACC
AATCTGACGACTTCACCACTCCGCAACAAAGGCATAGAGGCTCTTTCCTC
ATTTTCCAAAGGCATTTTGAAAATTTCACAGCACCATCAATACGCATCCT
CACTCGGGAAGACTTCAACTTCGACCGCTCCTGATAGTCCGTGTCAGGAT
GAACAGCGGGTGATTGGTCCCGACATTTCCATGGAGGACTTGATGTTGGC
GTGCACGAAATTAAAGAGACGCGTGAAGGTTATGGAAACCCAGACACGTG
AATTGAAGGAAGCAAACGGCAGGACCGAAGTAGAGCGGGACGAGATGATA
GATTTCCTGTACCGTGACGTGCTTCAAAGGGAGGATGTGCCGCCCCATGG
AACGCAAGCCTCTCTGCCTGCCCTCCGACGTGAATGGGCTCAACAAGAAG
AGGAACGACACCTGACCTTGCAGGCAATGCAACAACAGCATCGGGAGTAC
GTCCTGGCAAATAAAGCAGCACCGGCCTCCACCCTCGCCATAGCCCTGCC
ATCCATCCCAAAGCCGCAAGAGGAGCACGACGAATCAAGCTTAGCGACGG
TAAGGGAGCAAAACGTAGACGATAATGAACTTTGTCGCGTACAAAATGAA
TTAGAGGACGCCAAGCGGGCTTTGGCTCAGACGGAGGAGGAATTGCAAGC
CTTGCGACGCCAAGTGGCAGAGCAAAATAAAACGGCAGCCGAAGAAAGGG
ATACAGCGCGCAAATTGAAGCTCGAGGTAGGAAAGATGCAGGAAAGTCAT
GCAAAAGAGGTGACGCGTCTCCGGCGACAAATCCGACCGCAGGGAGAGGA
TGGAGCTCCTCAAGCCGGCCCGGAGACTCCTGCGTCGGAGGCAGGAAGGG
AAGGGAAGACGGGTGCCGAAAGGGAAAGGGCGGAGAAAACGGCCTCCTTT
CCCCGAGACAGGGCCATGGATGAGGCGGATGAATTGGAAAAAGAGCTGGC
GGCCTCTTCGCTCATCCTGCAGGAGAAGGACTCGGCGATTGATGCTTTGC
ATCGTGCCATGTCCCAGGATCAAAGCGAACGGCTCACGCTCGAATCCTCC
TTGCGGGCAGCCCAATCTAAGGTTGACTCGCTTACACAGGAGATAGCTTC
GATCTCCGGCTTGCTGCGGGGGGCTGAGCAGGAGAAGGAGAATCTTCGCC
AACGGGACGCGGAGCAGAGAGCGGAGCTGGACAGAGGCTGTCAGCAACTT
GCCGAGAAAACGGGGGTCTTGCTGCGGGTGCGATCGGATTTGGAGAAAAC
CGAACAATCCTGCGCATTGAAAACGGCCCAAATGGCGCAGCTGGAAACAG
GTGTGCAAGAAATGGTGCTGGAGATGAAGCGCCTCCGGGAAAGCGTGGAG
GAGGGGGAGATGGCACGGGCTCGTTTGTCTCGCGAGGTGGAAAGCAGGCA
GCAGGCCTGCGTGAAGCTGGAAAAGGCCTTGATGGAGACAAAGGAGATTT
TGCGGAAAGAAAAAGAAGCGTGGGAGTCAGGCGCTCAGGCGCAGAGAGAC
GAAAGTCGGCAACAGGCAGCAAGTCAGCAGCAAACGTTCGAGGAAGAGTT
GATGCTCTACCATAAAGAGTCCCAGAAAAAATCGGCGTTAGCACGGGAGA
TCATCGCCGACAAAGACCGACAGCTCGGCGAGTGTGTCCAGAAAATCATG
GCGCTGGAAGAGGAGATCGCCTCAGGCTCTTACACGGACAGGAAAATCAT
GGAGCTGGCCACGGTCCAGTCCCAACGGGACAGTCACCACCGGGCGGAAT
TGGAGTCTTGCAAAGTGAGTTTGAAGAAATTACAAGAAGCTTTGGCGACC
AAAGACCTGGAGGTCGGGCGTTTGACCGCTCTCCAAGCTACCCTGAACCA
GGAACGGGTGGCTCTCCGTCGAGCCCAACAACGGGAAGGGTGTAACCTGG
AATACTTGAAAAACGTGGTGGTCGACTACCTCTCCTTCCCCCCCGGGGCG
CTGTCGGAGAAGGCGTCTTTGGAACGCGTCCTTGCCACCCTCTTGGCTTT
CTCTCCCCAGGACAGAAAGAAAATTGCCGAAGGCAGAGAGGGAGGACAGG
GGGGGGGGATCGGTTGGTTGCTGACCGCTCCCAGACGACCTGTCAAACAC
ATCGCCCCGGGCGCGCATGCAGTTTCTGTAAGCCTAGTGGACTCAAGGAA
CCATGACCATGGAGTAGAAGCAGCCAAAAACAAGGCGGGTGTCCACGTGG
GGGGACGAGGAGGGCCGTTGGGAGATAAGGGGAACGGCCAGAGTAAGCTT
CCTTCCCCGTTGCGGGTGGGACGTGTGGAGGTGGTGGGCGGCGGAAAATC
TGGGAGCGATGGGAAGGAGGAGTGCGGAAAAAGAGACGGTGGGACGATGA
CTAAACCACAAAGCGCGGCAGGGGCCGTGGCACGGGTAGGATTTGAACAG
GGTTTTGGTTCTTTGAGTGGGAGCGGGGGGGGAAAGAGTGTGGAGGGAAG
CGTGGGCTCTTTGTCCTTGAGTCAGAGCGACTTCCAGAGCCTGAGCGAGC
ACGCCGATACTGGCAGGGAGGGAGGGAGGGGGAGGAGCTCGGCGAGTTTC
CTGGGCGAGCCACGGTATTCGACATCCTCGGCCGGGGGATTGACCACGCG
AAGCAGTGGAACAGAAAGCGAAGACGAGGAGGGGGGAAGGCCAAAGAGAG
GACCCGTCCTTTCTTTCTAGGCAGGTAGTCGACACAGAGGGAGGGAGGAG
GAGAGAGAGGGGGAGAGTGCGAGAAGCCGGGAACGAAGGGAAGTTAACAA
GGGGGAGAAGGATTTGAGCGAGACAGGTTGTGTATCATAGAAATAAAATG
ACGTGTATGACA

Coding sequence (CDS) from alignment at CM002462.1:179102..182213-

>rna3838 ID=rna3838|Name=rna3838|organism=Nannochloropsis gaditana|type=CDS|length=2928bp|location=Sequence derived from alignment at CM002462.1:179102..182213- (Nannochloropsis gaditana)
ATGGAGGCTCAAGGGACAGGCCCATCAAGTCCCACAAGGGTAACAACGAG
ACCAATAAAAGATCCGGCAGACGACCCTTTATCAGCATCTACACCCGGTT
TGACGCACGATAATAGCACCAGCACGTCGGAAGACAGTGGAGGACGGGAG
CACAAACCCAAATCGACGAGCACGGCGGGTATGGCGGCAGCGACGGCAGC
TTCCCTTTTCAGGGGTCTTCACGGCGGGAATGGCCTTAAAAACAATAGCC
ACGGCACCAATCTGACGACTTCACCACTCCGCAACAAAGGCATAGAGGCT
CTTTCCTCATTTTCCAAAGGCATTTTGAAAATTTCACAGCACCATCAATA
CGCATCCTCACTCGGGAAGACTTCAACTTCGACCGCTCCTGATAGTCCGT
GTCAGGATGAACAGCGGGTGATTGGTCCCGACATTTCCATGGAGGACTTG
ATGTTGGCGTGCACGAAATTAAAGAGACGCGTGAAGGTTATGGAAACCCA
GACACGTGAATTGAAGGAAGCAAACGGCAGGACCGAAGTAGAGCGGGACG
AGATGATAGATTTCCTGTACCGTGACGTGCTTCAAAGGGAGGATGTGCCG
CCCCATGGAACGCAAGCCTCTCTGCCTGCCCTCCGACGTGAATGGGCTCA
ACAAGAAGAGGAACGACACCTGACCTTGCAGGCAATGCAACAACAGCATC
GGGAGTACGTCCTGGCAAATAAAGCAGCACCGGCCTCCACCCTCGCCATA
GCCCTGCCATCCATCCCAAAGCCGCAAGAGGAGCACGACGAATCAAGCTT
AGCGACGGTAAGGGAGCAAAACGTAGACGATAATGAACTTTGTCGCGTAC
AAAATGAATTAGAGGACGCCAAGCGGGCTTTGGCTCAGACGGAGGAGGAA
TTGCAAGCCTTGCGACGCCAAGTGGCAGAGCAAAATAAAACGGCAGCCGA
AGAAAGGGATACAGCGCGCAAATTGAAGCTCGAGGTAGGAAAGATGCAGG
AAAGTCATGCAAAAGAGGTGACGCGTCTCCGGCGACAAATCCGACCGCAG
GGAGAGGATGGAGCTCCTCAAGCCGGCCCGGAGACTCCTGCGTCGGAGGC
AGGAAGGGAAGGGAAGACGGGTGCCGAAAGGGAAAGGGCGGAGAAAACGG
CCTCCTTTCCCCGAGACAGGGCCATGGATGAGGCGGATGAATTGGAAAAA
GAGCTGGCGGCCTCTTCGCTCATCCTGCAGGAGAAGGACTCGGCGATTGA
TGCTTTGCATCGTGCCATGTCCCAGGATCAAAGCGAACGGCTCACGCTCG
AATCCTCCTTGCGGGCAGCCCAATCTAAGGTTGACTCGCTTACACAGGAG
ATAGCTTCGATCTCCGGCTTGCTGCGGGGGGCTGAGCAGGAGAAGGAGAA
TCTTCGCCAACGGGACGCGGAGCAGAGAGCGGAGCTGGACAGAGGCTGTC
AGCAACTTGCCGAGAAAACGGGGGTCTTGCTGCGGGTGCGATCGGATTTG
GAGAAAACCGAACAATCCTGCGCATTGAAAACGGCCCAAATGGCGCAGCT
GGAAACAGGTGTGCAAGAAATGGTGCTGGAGATGAAGCGCCTCCGGGAAA
GCGTGGAGGAGGGGGAGATGGCACGGGCTCGTTTGTCTCGCGAGGTGGAA
AGCAGGCAGCAGGCCTGCGTGAAGCTGGAAAAGGCCTTGATGGAGACAAA
GGAGATTTTGCGGAAAGAAAAAGAAGCGTGGGAGTCAGGCGCTCAGGCGC
AGAGAGACGAAAGTCGGCAACAGGCAGCAAGTCAGCAGCAAACGTTCGAG
GAAGAGTTGATGCTCTACCATAAAGAGTCCCAGAAAAAATCGGCGTTAGC
ACGGGAGATCATCGCCGACAAAGACCGACAGCTCGGCGAGTGTGTCCAGA
AAATCATGGCGCTGGAAGAGGAGATCGCCTCAGGCTCTTACACGGACAGG
AAAATCATGGAGCTGGCCACGGTCCAGTCCCAACGGGACAGTCACCACCG
GGCGGAATTGGAGTCTTGCAAAGTGAGTTTGAAGAAATTACAAGAAGCTT
TGGCGACCAAAGACCTGGAGGTCGGGCGTTTGACCGCTCTCCAAGCTACC
CTGAACCAGGAACGGGTGGCTCTCCGTCGAGCCCAACAACGGGAAGGGTG
TAACCTGGAATACTTGAAAAACGTGGTGGTCGACTACCTCTCCTTCCCCC
CCGGGGCGCTGTCGGAGAAGGCGTCTTTGGAACGCGTCCTTGCCACCCTC
TTGGCTTTCTCTCCCCAGGACAGAAAGAAAATTGCCGAAGGCAGAGAGGG
AGGACAGGGGGGGGGGATCGGTTGGTTGCTGACCGCTCCCAGACGACCTG
TCAAACACATCGCCCCGGGCGCGCATGCAGTTTCTGTAAGCCTAGTGGAC
TCAAGGAACCATGACCATGGAGTAGAAGCAGCCAAAAACAAGGCGGGTGT
CCACGTGGGGGGACGAGGAGGGCCGTTGGGAGATAAGGGGAACGGCCAGA
GTAAGCTTCCTTCCCCGTTGCGGGTGGGACGTGTGGAGGTGGTGGGCGGC
GGAAAATCTGGGAGCGATGGGAAGGAGGAGTGCGGAAAAAGAGACGGTGG
GACGATGACTAAACCACAAAGCGCGGCAGGGGCCGTGGCACGGGTAGGAT
TTGAACAGGGTTTTGGTTCTTTGAGTGGGAGCGGGGGGGGAAAGAGTGTG
GAGGGAAGCGTGGGCTCTTTGTCCTTGAGTCAGAGCGACTTCCAGAGCCT
GAGCGAGCACGCCGATACTGGCAGGGAGGGAGGGAGGGGGAGGAGCTCGG
CGAGTTTCCTGGGCGAGCCACGGTATTCGACATCCTCGGCCGGGGGATTG
ACCACGCGAAGCAGTGGAACAGAAAGCGAAGACGAGGAGGGGGGAAGGCC
AAAGAGAGGACCCGTCCTTTCTTTCTAG

Synonyms

Publications