|
|
Properties
| Property Name | Value |
|---|
| Product | proteasome alpha 1 subunit |
| Orig transcript id | gnl|cribi|Naga_100263g5.893.mrna |
| Orig protein id | gnl|cribi|Naga_100263g5.893 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:177728..179110 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3837 ID=rna3837|Name=rna3837|organism=Nannochloropsis gaditana|type=mRNA|length=2216bp
GTATGAACAAGTTGCCTCCTTGTATACCATCCGGCAATGGGCGAGGAGGT
GTGGTCGGAAATGGTGGCTATACGACACCCCACAAGGCGAATGTTAGAAG
CAACATGCATGAATCCTTCCCATGCGTCGTGGGCGCAGAAGCTCAACGCA
TCCAAGCCGAGGTCGATGAGGTTGTCAAACGACTTATCCACGAGCAGGCC
CCTTCCTCTGCTGCCCCAACACCAACCCTTTGGTCTCCGCATCCCACTTA
CCCAGACATCCAAGTCTCCAGCAGTGGATTATTTCGGATCACTTCCACGA
TCACAGCGGCCACTTTCAATTTGAACGACGTATCGGCAGCTTTCATTTTT
TTCCACATCCACACCCATAGTCCCCAAATCCTACAATCACTCCTATTTGC
CCAGCTTGAGCGGGTCAAGATCCTCGCACTTTTGCCTGCGTCTTGCAGCG
GGAGCCTCACCAGCAGCAACGATGGATGCGTTACTGGCAGCCGTGAGAGC
CACGAATCGGAAGGAAATGGGAGTGGAACGGATAGTAGCATTGTAAAAAT
GACGTGGGCAGAGAAAAAGCATCCTGCCCGAGAATTTGTTGTCGCGCAGC
GCACGGGCCGGTACCGGTACCCATCTCCCGGTGCAAGCAACAGCTCCGAG
GGCAGCCCTCATTTAGATGGAGACTTCGTCTACTACCTTGCCACGTCTTT
CAAAAACCCTCACCTGATTCCATCCTTACTGCCCGCCCTCTCCCAAGAGG
CTGGCCCTCCGTCCCCGGTCGTGGCCCCTCCCTCTCCCTTGACAAAGGCG
CATGCCGCTTTTCCCCTCTTCGCCCTCCTTGTCGGCCCATCCACCGCTCA
AAACGCCCTAACCCTCTCTGTGGTCCTTGCCCCCGGCATTCTTTGTCAAG
ATTCGTCTCTGCTTCCGTTCTTGCGCAGCTGCTTGGTCGCCATGGGTGAC
TACCTGATCGACACCTTTAGCGCCCACCGGTCCCTGAACCTCGCCCTCCC
CGACCCGACCGTCGCGCTTATCTCTCCCTCGGCCACACAGCACCGGATCC
TCCTTCGCATGCCTGACACGCCCTCCACCTCCCTGCCCTCGCCTTCCTTG
CCATCTCCCTCCTCCTCCTCCCCGTCCTCCCTCCCCCCCCCCACCTATCG
CCTGGTCACCATCTCCTACCTCCCTTCCTCCGCCGGCACCTTCCTCCTGC
ACGGCTGGGCCTCCAAGGACCAATCCCTCTTTCCTTCCTCTTATGTACAG
AAGACGCTCCATCATGCCTTCCTCCCAGGAATATGGAGGAAGATCCGTGT
CGTCATATCTGCCGAGACCAAAGAACTCTCGCTCGTCTGGCGGGGCTTAA
GGAAAGGGAAACTGCATAGATACAGAGTGCATGTTCGCACCATCCCTGCT
TCCGCCCTTTCCCGCACCCTCACTTACCTTCACTGCCTCGCATACCTCCC
CCGGGTCCTGATGGGCAAGGAAGAAACGAAAGATAAGGTGATGACCACGC
GCACCTTCTCCTTGACTCGACCGGCGGCCCTGGTAACCGTCATCCGTTAC
CCCCAGCACATGCGCGAAGCACTTTTCCCGCTTGCTACGCTATTGCCCGC
ATCCTTCTCTTCCGCGACCTCTATTGCTGCTTTTCCTGTCAAGCCAGCCT
CCTTTTTCCCTTCCCTCTCCTCCCTCCCCCGGGCCTTGCGACGCGCTTCC
TCCATCACGACCAGCACCCCTCCTTCTCTCCCTTCCTCTTCCTGCTTTCC
TTCCTCTACAACCACATCGCCCCTCACTCGCCCTCCCCTTTCCAGCAGCC
TCTCTGCCCTTCTCCTCCCCTACCTGATCCCTGCCCCCAACCCCCTGCTT
GCCTTGCTAGACCCTCTCTTCCCCCTCGCCATGGCCCTGGGACCCTACGC
CTTCCTCTACCACGCCCTCCATTGCTACCCGGAAGCCGCCCTCGCCCTGG
AAGAACTGTCCTTCCCCGCACTCGCCGTCGGCCTGGGCGTCGTCCACTTG
GCCCTCTCCCTTGCCCTACAGGCTCTAACCACCAGCAAGCTACAGGTGTA
TCTGAACTTGGTCTCATTGGAATGCGTCGTGCTCAGCCAGGACCTGTGGG
CGCGGGCGCTCTTCACCCTTCATTTTCTAGCTTCCGCTGGGCTCACCATG
ATTGGGGCCTTGCTTGCGCAGGTTCTGGCCTGGGAGGGCGGGAGGGAGGG
CGGGAGGGAGGGAGGG back to topprotein sequence of rna3837 >rna3837-protein ID=rna3837-protein|Name=rna3837|organism=Nannochloropsis gaditana|type=polypeptide|length=331bp
MVVSVRGGLWGMGDLLLWCFVNFFFVPALCSSPPSTSVPNGGGTAPGGFS
SRGELPQLDFARLGAYRFASPSLCVRTRRACYVLCARPEQHPLQDNYEVD
PLSRDTITIPATTSSSTGRGVHLVSPGIGCLCQGQDGDVLALLGLMRREA
EKYLHAFGHPISARVLAQRVGTILGGKGQETWSRPLCCISVLMSSSGTAT
SAAAIPSSPFRSSSLRGEAEMYQIDPTGLVFSIRGQVFGGKDATDPVAHD
LQEWLGCFLQERDAEGEKGREEGEENEQEIWTALWTGMKKFIPNVAQHPE
SVECARAAASSFRRLGPVTVVVKGPEGVREE back to topmRNA from alignment at CM002462.1:177728..179110+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3837 ID=rna3837|Name=rna3837|organism=Nannochloropsis gaditana|type=mRNA|length=1383bp|location=Sequence derived from alignment at CM002462.1:177728..179110+ (Nannochloropsis gaditana)
GATAACAAGGCACACCCCTCCCCATAAACACCACCTCGCAGGCCTTCCAA
GACGCAGTGATAGACATCCGAGTCGCGTTGCAAGATTCCGACACGACGGG
CGTGACTGGAGACAAAAAGTGGACAGGCATTGTTACAAGGCTGCTCCGTT
GAAGATATCTCCGAAGAAGGTGAACTTCCGAGCCCCTGGCCTACGTCCTT
GTTCACTTTGCGCCGCCCGCCCGCGACTATTTTGCTCATAGTTGGTCCTC
CGTGCACAGGTTACAAACGTAAGTATGGTCGTCTCTGTCAGAGGTGGCCT
ATGGGGAATGGGGGATCTTCTGCTTTGGTGCTTTGTGAATTTCTTCTTTG
TACCCGCCTTGTGctcgtcgcctccctctaCTAGTGTGCCAAATGGCGGT
GGGACCGCCCCAGGAGGTTTCTCATCGAGAGGTGAGCTACCGCAATTGGA
TTTTGCGCGTCTTGGAGCCTACCGCTTCGCCTCACCAAGTCTGTGCGTCA
GGACACGACGAGCCTGCTACGTATTGTGCGCGCGGCCGGAGCAGCATCCT
CTGCAGGACAACTACGAGGTTGACCCCTTGTCTAGAGATACCATCACCAT
ACCTGCGACAACAAGCAGTAGTACAGGTAGAGGCGTCCACCTGGTGTCGC
CAGGGATCGGTTGCTTGTGTCAGGGACAAGATGGAGACGTGCTCGCCCTT
CTGGGACTCATGCGTCGGGAGGCGGAAAAATATTTACACGCCTTTGGGCA
CCCGATCTCGGCCCGGGTGCTGGCTCAGCGCGTAGGGACAATTTTAGGCG
GTAAAGGGCAAGAAACATGGTCCCGACCTCTGTGCTGCATTTCGGTGCTC
ATGTCTTCTTCAGGTACTGCTACGAGCGCAGCCGccattccttcttcccc
tttccgtTCCTCATCACTGAGGGGCGAAGCAGAAATGTACCAGATCGATC
CCACTGGGTTAGTCTTCAGCATACGAGGACAGGTTTTCGGCGGCAAAGAC
GCGACAGATCCGGTGGCACATGACCTGCAGGAATGGCTTGGCTGCTTTCT
TCAGGAAAGGGAtgccgagggggagaaaggacgagaggaaggggaagaaa
acgaACAGGAGATATGGACAGCCCTATGGACGGGCATGAAGAAATTCATA
CCAAACGTAGCACAGCATCCCGAGTCAGTGGAATGTGCTCGAGcggctgc
ttcctcttttcgaCGTTTGGGTCCGGTGACCGTAGTGGTCAAAGGAccgg
agggcgtgagggaggagtaaGCATGTGGACAAAGCAACAATCGCATGTAT
GCATGGGTGATGAACGCACCACCCTCATGTATCCACGCTGGAGATGACCG
CAGGACGAAGCAATAAAGCATAGATGTCATACA back to topCoding sequence (CDS) from alignment at CM002462.1:177728..179110+ >rna3837 ID=rna3837|Name=rna3837|organism=Nannochloropsis gaditana|type=CDS|length=996bp|location=Sequence derived from alignment at CM002462.1:177728..179110+ (Nannochloropsis gaditana)
ATGGTCGTCTCTGTCAGAGGTGGCCTATGGGGAATGGGGGATCTTCTGCT
TTGGTGCTTTGTGAATTTCTTCTTTGTACCCGCCTTGTGctcgtcgcctc
cctctaCTAGTGTGCCAAATGGCGGTGGGACCGCCCCAGGAGGTTTCTCA
TCGAGAGGTGAGCTACCGCAATTGGATTTTGCGCGTCTTGGAGCCTACCG
CTTCGCCTCACCAAGTCTGTGCGTCAGGACACGACGAGCCTGCTACGTAT
TGTGCGCGCGGCCGGAGCAGCATCCTCTGCAGGACAACTACGAGGTTGAC
CCCTTGTCTAGAGATACCATCACCATACCTGCGACAACAAGCAGTAGTAC
AGGTAGAGGCGTCCACCTGGTGTCGCCAGGGATCGGTTGCTTGTGTCAGG
GACAAGATGGAGACGTGCTCGCCCTTCTGGGACTCATGCGTCGGGAGGCG
GAAAAATATTTACACGCCTTTGGGCACCCGATCTCGGCCCGGGTGCTGGC
TCAGCGCGTAGGGACAATTTTAGGCGGTAAAGGGCAAGAAACATGGTCCC
GACCTCTGTGCTGCATTTCGGTGCTCATGTCTTCTTCAGGTACTGCTACG
AGCGCAGCCGccattccttcttcccctttccgtTCCTCATCACTGAGGGG
CGAAGCAGAAATGTACCAGATCGATCCCACTGGGTTAGTCTTCAGCATAC
GAGGACAGGTTTTCGGCGGCAAAGACGCGACAGATCCGGTGGCACATGAC
CTGCAGGAATGGCTTGGCTGCTTTCTTCAGGAAAGGGAtgccgaggggga
gaaaggacgagaggaaggggaagaaaacgaACAGGAGATATGGACAGCCC
TATGGACGGGCATGAAGAAATTCATACCAAACGTAGCACAGCATCCCGAG
TCAGTGGAATGTGCTCGAGcggctgcttcctcttttcgaCGTTTGGGTCC
GGTGACCGTAGTGGTCAAAGGAccggagggcgtgagggaggagtaa back to top
|