EWM26844.1, cds3828 (CDS) Nannochloropsis gaditana

Overview
NameEWM26844.1
Unique Namecds3828
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:178002..178997 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26844.1
Productproteasome alpha 1 subunit
Orig transcript idgnl|cribi|Naga_100263g5.893.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:178002..178997 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004298threonine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0051603proteolysis involved in cellular protein catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005839proteasome core complex
Vocabulary: INTERPRO
TermDefinition
IPR001353Proteasome_sua/b
IPR029055Ntn_hydrolases_N
Homology
[Close]
BLAST of EWM26844.1 vs. NCBI_GenBank
Match: gi|585108938|gb|EWM26844.1| (proteasome alpha 1 subunit [Nannochloropsis gaditana])

HSP 1 Score: 675.241 bits (1741), Expect = 0.000e+0
Identity = 331/331 (100.00%), Postives = 331/331 (100.00%), Query Frame = 0 
Query:    1 MVVSVRGGLWGMGDLLLWCFVNFFFVPALCSSPPSTSVPNGGGTAPGGFSSRGELPQLDFARLGAYRFASPSLCVRTRRACYVLCARPEQHPLQDNYEVDPLSRDTITIPATTSSSTGRGVHLVSPGIGCLCQGQDGDVLALLGLMRREAEKYLHAFGHPISARVLAQRVGTILGGKGQETWSRPLCCISVLMSSSGTATSAAAIPSSPFRSSSLRGEAEMYQIDPTGLVFSIRGQVFGGKDATDPVAHDLQEWLGCFLQERDAEGEKGREEGEENEQEIWTALWTGMKKFIPNVAQHPESVECARAAASSFRRLGPVTVVVKGPEGVREE 331
            MVVSVRGGLWGMGDLLLWCFVNFFFVPALCSSPPSTSVPNGGGTAPGGFSSRGELPQLDFARLGAYRFASPSLCVRTRRACYVLCARPEQHPLQDNYEVDPLSRDTITIPATTSSSTGRGVHLVSPGIGCLCQGQDGDVLALLGLMRREAEKYLHAFGHPISARVLAQRVGTILGGKGQETWSRPLCCISVLMSSSGTATSAAAIPSSPFRSSSLRGEAEMYQIDPTGLVFSIRGQVFGGKDATDPVAHDLQEWLGCFLQERDAEGEKGREEGEENEQEIWTALWTGMKKFIPNVAQHPESVECARAAASSFRRLGPVTVVVKGPEGVREE
Sbjct:    1 MVVSVRGGLWGMGDLLLWCFVNFFFVPALCSSPPSTSVPNGGGTAPGGFSSRGELPQLDFARLGAYRFASPSLCVRTRRACYVLCARPEQHPLQDNYEVDPLSRDTITIPATTSSSTGRGVHLVSPGIGCLCQGQDGDVLALLGLMRREAEKYLHAFGHPISARVLAQRVGTILGGKGQETWSRPLCCISVLMSSSGTATSAAAIPSSPFRSSSLRGEAEMYQIDPTGLVFSIRGQVFGGKDATDPVAHDLQEWLGCFLQERDAEGEKGREEGEENEQEIWTALWTGMKKFIPNVAQHPESVECARAAASSFRRLGPVTVVVKGPEGVREE 331
[Close]
BLAST of EWM26844.1 vs. NCBI_GenBank
Match: gi|694545054|ref|XP_009498084.1| (hypothetical protein H696_06042 [Fonticula alba] >gi|627945453|gb|KCV67523.1| hypothetical protein H696_06042 [Fonticula alba])

HSP 1 Score: 62.7734 bits (151), Expect = 1.097e-7
Identity = 49/150 (32.67%), Postives = 75/150 (50.00%), Query Frame = 0 
Query:   49 FSSRGELPQLDFARLGAYRFASP--SLCVRTRRACYVLCARPEQHPLQDNYEVDPLSRDTITIPATTSSSTGRGVHLVSPGIGCLCQGQDGDVLALLGLMRREAEKYLHAFGHPISARVLAQRVGTILGGKGQETWSRPLCCISVLMSSS 196
            FS  G L Q+++A   A   A+P  +L V T  +C VL +   Q  + + + VDP S   I              H VS G+GC+  G+ GD +A L  MR EA    +  G P+ A VLAQR+ ++     Q+ + RPL   ++L+++ 
Sbjct:   16 FSPEGRLYQVEYA-FKAITSAAPLTALAV-TSNSCAVLVS---QRKIPERF-VDPTSVSHI--------------HSVSRGVGCITLGRTGDCVAQLARMREEAAHSEYKLGMPMGADVLAQRMASLAQVYTQQAYMRPLAVATLLVAAD 145
The following BLAST results are available for this feature:
BLAST of EWM26844.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585108938|gb|EWM26844.1|0.000e+0100.00proteasome alpha 1 subunit [Nannochloropsis gadita... [more]
gi|694545054|ref|XP_009498084.1|1.097e-732.67hypothetical protein H696_06042 [Fonticula alba] >... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3837rna3837Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications