rna3836, rna3836 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3836
Unique Name	rna3836
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1492
Alignment location	CM002462.1:175372..177587 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100263g6.890.mrna
Orig protein id	gnl\|cribi\|Naga_100263g6.890
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:175372..177587 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100263g6	gene3692	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26841.1	cds3827	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3836	rna3836-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:175372..177587-
coding sequence from alignment at CM002462.1:175372..177587-

mRNA sequence

>rna3836 ID=rna3836|Name=rna3836|organism=Nannochloropsis gaditana|type=mRNA|length=1492bp
GGCGGGAGGGAAGGGGCGGTCGGAAGCGCCAGGAAGAGCTGGGGAGGCTA
TCATCGATCGGTACAATGTAGCAGCGAAGAACGCAGTCCTCATGCGTGGT
TGACAATGTATTTAAATTCTTTTCAAGTGGACCGGGCATCCGAAGCCAAG
CTCCTGCTGATCGGATGGATGACTGCCGTGGCCGTGATGGGTGCCGGGGG
GGTGGGGATGTGGCATTGGATCACAGGGTGCAATCGCGGGTTGAACAAGC
AATTAGTGACCATCTTAGATCGAGCACGGGTGGTAGCGCCACGTTTGGCA
TTATCCACCAGCGCCCGCAGCTTGGGAGGCCGGCACGTAGGGACGGGGGG
AGGGGAAGGGAGGGACCGGGGGGAAGAGAGGGAGGGTAACCGCCGGGGCG
CATTGAGCCTGGTGGGAGAGCGGTCGTCGTCTCTGGGACAAAGCGGGAGG
CCATCGATGTCTGGGCAGCCCTTGATGGATGCAGGGCCTCGGCACGCCAC
TCCAAAAAGCGCTCCCGTGGTCTTGAAATCGGTGGCGAACCAGCCATTGT
GGGAGGGGCAGGTCGGCCCGCGTGGGAACAAGGCGGGGAAGGCGGTGGGA
GGAGGACAAGGGGCCTGGTTGGTGGCCCACGGTGAGAGAGACGGGACGAG
GACAGGGCCCGGCGGGGAAAGACGGGCCGGCTTGGGCCTTGATTCCTCTC
CCTCCTCCGCTTCCTCCCTCCCGCCTGACGGCACGGCGGCGATCCCGCCC
GCCTCCCCTCTTTCCTCCCTGGGGACGGAGGTCACGAGCAAGGAGGGAGC
ACGGGAGGAGGATGCCATGACGCAGAATACTCCGAGGGGAGCAGGCAATG
CTGAAATAATCGCAGGCCATACAACGGCGGCCGATCCCGCCCGTCGTCTC
TCCACTTCTGCAGGGGTCAAATTCCAGCCTCCCGCATTCTACGGGCGCGT
GGTGGAGCCAGACTACGAGCGAGACATGGGGCAAAAGACACTGGAGCGGG
GACTAGTCAAAAGCGGGATGGTGCAAGAAAAACGGCCGTCGGGGACCGGT
TGGGCGCGTCGGAAATGTTGGAAAGACGTGTACCTGGTGGTGGACGCGGG
GGCGGTCACTGTGTACAGACAGCGAGCCGATTCGTCCGTGGTGCTTCACC
GGCTCCCCGTGGCGGAGGTGGGCACGCGAAAAATCGTAGGGGGGGACAAG
CAGGACGCTGGGATGATTTTAACCTGCGGAGGGGAGAGTGTGGAGCTGCA
GTGCCCCGCCGGAGAGGGAGAAGTCGACAAGTGGTTGTCTGTATTGCAAT
GGAACGCAGAGGTGGCATTGCGGCGGGCCTAGGTCCGGGGGGCTCAGGGC
AGGGAAGGTGAGAGGGATGTTTCGCGACATGGGGAAGGGAGGGAGGCGGT
GTGAAATCTAGCGCCAAGAATGCCGGGTGGGTAATGGAGTGATAATTGCA
GAGCACTCATCATGGGGAATGAAAGATTGACTCAAGTCTCAT

protein sequence of rna3836

>rna3836-protein ID=rna3836-protein|Name=rna3836|organism=Nannochloropsis gaditana|type=polypeptide|length=738bp
MNKLPPCIPSGNGRGGVVGNGGYTTPHKANVRSNMHESFPCVVGAEAQRI
QAEVDEVVKRLIHEQAPSSAAPTPTLWSPHPTYPDIQVSSSGLFRITSTI
TAATFNLNDVSAAFIFFHIHTHSPQILQSLLFAQLERVKILALLPASCSG
SLTSSNDGCVTGSRESHESEGNGSGTDSSIVKMTWAEKKHPAREFVVAQR
TGRYRYPSPGASNSSEGSPHLDGDFVYYLATSFKNPHLIPSLLPALSQEA
GPPSPVVAPPSPLTKAHAAFPLFALLVGPSTAQNALTLSVVLAPGILCQD
SSLLPFLRSCLVAMGDYLIDTFSAHRSLNLALPDPTVALISPSATQHRIL
LRMPDTPSTSLPSPSLPSPSSSSPSSLPPPTYRLVTISYLPSSAGTFLLH
GWASKDQSLFPSSYVQKTLHHAFLPGIWRKIRVVISAETKELSLVWRGLR
KGKLHRYRVHVRTIPASALSRTLTYLHCLAYLPRVLMGKEETKDKVMTTR
TFSLTRPAALVTVIRYPQHMREALFPLATLLPASFSSATSIAAFPVKPAS
FFPSLSSLPRALRRASSITTSTPPSLPSSSCFPSSTTTSPLTRPPLSSSL
SALLLPYLIPAPNPLLALLDPLFPLAMALGPYAFLYHALHCYPEAALALE
ELSFPALAVGLGVVHLALSLALQALTTSKLQVYLNLVSLECVVLSQDLWA
RALFTLHFLASAGLTMIGALLAQVLAWEGGREGGREGG

mRNA from alignment at CM002462.1:175372..177587-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3836 ID=rna3836|Name=rna3836|organism=Nannochloropsis gaditana|type=mRNA|length=2216bp|location=Sequence derived from alignment at CM002462.1:175372..177587- (Nannochloropsis gaditana)
GTATGAACAAGTTGCCTCCTTGTATACCATCCGGCAATGGGCGAGGAGGT
GTGGTCGGAAATGGTGGCTATACGACACCCCACAAGGCGAATGTTAGAAG
CAACATGCATGAATCCTTCCCATGCGTCGTGGGCGCAGAAGCTCAACGCA
TCCAAGCCGAGGTCGATGAGGTTGTCAAACGACTTATCCACGAGCAGGCC
CCTTCCTCTGCTGCCCCAACACCAACCCTTTGGTCTCCGCATCCCACTTA
CCCAGACATCCAAGTCTCCAGCAGTGGATTATTTCGGATCACTTCCACGA
TCACAGCGGCCACTTTCAATTTGAACGACGTATCGGCAGCTTTCATTTTT
TTCCACATCCACACCCATAGTCCCCAAATCCTACAATCACTCCTATTTGC
CCAGCTTGAGCGGGTCAAGATCCTCGCACTTTTGCCTGCGTCTTGCAGCG
GGAGCCTCACCAGCAGCAACGATGGATGCGTTACTGGCAGCCGTGAGAGC
CACGAATCGGAAGGAAATGGGAGTGGAACGGATAGTAGCATTGTAAAAAT
GACGTGGGCAGAGAAAAAGCATCCTGCCCGAGAATTTGTTGTCGCGCAGC
GCACGGGCCGGTACCGGTACCCATCTCCCGGTGCAAGCAACAGCTCCGAG
GGCAGCCCTCATTTAGATGGAGACTTCGTCTACTACCTTGCCACGTCTTT
CAAAAACCCTCACCTGATTCCATCCTTACTGCCCGCCCTCTCCCAAGAGG
CTGGCCCTCCGTCCCCGGTCGTGGCCCCTCCCTCTCCCTTGACAAAGGCG
CATGCCGCTTTTCCCCTCTTCGCCCTCCTTGTCGGCCCATCCACCGCTCA
AAACGCCCTAACCCTCTCTGTGGTCCTTGCCCCCGGCATTCTTTGTCAAG
ATTCGTCTCTGCTTCCGTTCTTGCGCAGCTGCTTGGTCGCCATGGGTGAC
TACCTGATCGACACCTTTAGCGCCCACCGGTCCCTGAACCTCGCCCTCCC
CGACCCGACCGTCGCGCTTATCTCTCCCTCGGCCACACAGCACCGGATCC
TCCTTCGCATGCCTGACACGCCCTCCACCTCCCTGCCCTCGCCTTCCTTG
CCATCTCCCTCCTCCTCCTCCCCGTCCTCCCTCCCCCCCCCCACCTATCG
CCTGGTCACCATCTCCTACCTCCCTTCCTCCGCCGGCACCTTCCTCCTGC
ACGGCTGGGCCTCCAAGGACCAATCCCTCTTTCCTTCCTCTTATGTACAG
AAGACGCTCCATCATGCCTTCCTCCCAGGAATATGGAGGAAGATCCGTGT
CGTCATATCTGCCGAGACCAAAGAACTCTCGCTCGTCTGGCGGGGCTTAA
GGAAAGGGAAACTGCATAGATACAGAGTGCATGTTCGCACCATCCCTGCT
TCCGCCCTTTCCCGCACCCTCACTTACCTTCACTGCCTCGCATACCTCCC
CCGGGTCCTGATGGGCAAGGAAGAAACGAAAGATAAGGTGATGACCACGC
GCACCTTCTCCTTGACTCGACCGGCGGCCCTGGTAACCGTCATCCGTTAC
CCCCAGCACATGCGCGAAGCACTTTTCCCGCTTGCTACGCTATTGCCCGC
ATCCTTCTCTTCCGCGACCTCTATTGCTGCTTTTCCTGTCAAGCCAGCCT
CCTTTTTCCCTTCCCTCTCCTCCCTCCCCCGGGCCTTGCGACGCGCTTCC
TCCATCACGACCAGCACCCCTCCTTCTCTCCCTTCCTCTTCCTGCTTTCC
TTCCTCTACAACCACATCGCCCCTCACTCGCCCTCCCCTTTCCAGCAGCC
TCTCTGCCCTTCTCCTCCCCTACCTGATCCCTGCCCCCAACCCCCTGCTT
GCCTTGCTAGACCCTCTCTTCCCCCTCGCCATGGCCCTGGGACCCTACGC
CTTCCTCTACCACGCCCTCCATTGCTACCCGGAAGCCGCCCTCGCCCTGG
AAGAACTGTCCTTCCCCGCACTCGCCGTCGGCCTGGGCGTCGTCCACTTG
GCCCTCTCCCTTGCCCTACAGGCTCTAACCACCAGCAAGCTACAGGTGTA
TCTGAACTTGGTCTCATTGGAATGCGTCGTGCTCAGCCAGGACCTGTGGG
CGCGGGCGCTCTTCACCCTTCATTTTCTAGCTTCCGCTGGGCTCACCATG
ATTGGGGCCTTGCTTGCGCAGGTTCTGGCCTGGGAGGGCGGGAGGGAGGG
CGGGAGGGAGGGAGGG

Coding sequence (CDS) from alignment at CM002462.1:175372..177587-

>rna3836 ID=rna3836|Name=rna3836|organism=Nannochloropsis gaditana|type=CDS|length=2214bp|location=Sequence derived from alignment at CM002462.1:175372..177587- (Nannochloropsis gaditana)
ATGAACAAGTTGCCTCCTTGTATACCATCCGGCAATGGGCGAGGAGGTGT
GGTCGGAAATGGTGGCTATACGACACCCCACAAGGCGAATGTTAGAAGCA
ACATGCATGAATCCTTCCCATGCGTCGTGGGCGCAGAAGCTCAACGCATC
CAAGCCGAGGTCGATGAGGTTGTCAAACGACTTATCCACGAGCAGGCCCC
TTCCTCTGCTGCCCCAACACCAACCCTTTGGTCTCCGCATCCCACTTACC
CAGACATCCAAGTCTCCAGCAGTGGATTATTTCGGATCACTTCCACGATC
ACAGCGGCCACTTTCAATTTGAACGACGTATCGGCAGCTTTCATTTTTTT
CCACATCCACACCCATAGTCCCCAAATCCTACAATCACTCCTATTTGCCC
AGCTTGAGCGGGTCAAGATCCTCGCACTTTTGCCTGCGTCTTGCAGCGGG
AGCCTCACCAGCAGCAACGATGGATGCGTTACTGGCAGCCGTGAGAGCCA
CGAATCGGAAGGAAATGGGAGTGGAACGGATAGTAGCATTGTAAAAATGA
CGTGGGCAGAGAAAAAGCATCCTGCCCGAGAATTTGTTGTCGCGCAGCGC
ACGGGCCGGTACCGGTACCCATCTCCCGGTGCAAGCAACAGCTCCGAGGG
CAGCCCTCATTTAGATGGAGACTTCGTCTACTACCTTGCCACGTCTTTCA
AAAACCCTCACCTGATTCCATCCTTACTGCCCGCCCTCTCCCAAGAGGCT
GGCCCTCCGTCCCCGGTCGTGGCCCCTCCCTCTCCCTTGACAAAGGCGCA
TGCCGCTTTTCCCCTCTTCGCCCTCCTTGTCGGCCCATCCACCGCTCAAA
ACGCCCTAACCCTCTCTGTGGTCCTTGCCCCCGGCATTCTTTGTCAAGAT
TCGTCTCTGCTTCCGTTCTTGCGCAGCTGCTTGGTCGCCATGGGTGACTA
CCTGATCGACACCTTTAGCGCCCACCGGTCCCTGAACCTCGCCCTCCCCG
ACCCGACCGTCGCGCTTATCTCTCCCTCGGCCACACAGCACCGGATCCTC
CTTCGCATGCCTGACACGCCCTCCACCTCCCTGCCCTCGCCTTCCTTGCC
ATCTCCCTCCTCCTCCTCCCCGTCCTCCCTCCCCCCCCCCACCTATCGCC
TGGTCACCATCTCCTACCTCCCTTCCTCCGCCGGCACCTTCCTCCTGCAC
GGCTGGGCCTCCAAGGACCAATCCCTCTTTCCTTCCTCTTATGTACAGAA
GACGCTCCATCATGCCTTCCTCCCAGGAATATGGAGGAAGATCCGTGTCG
TCATATCTGCCGAGACCAAAGAACTCTCGCTCGTCTGGCGGGGCTTAAGG
AAAGGGAAACTGCATAGATACAGAGTGCATGTTCGCACCATCCCTGCTTC
CGCCCTTTCCCGCACCCTCACTTACCTTCACTGCCTCGCATACCTCCCCC
GGGTCCTGATGGGCAAGGAAGAAACGAAAGATAAGGTGATGACCACGCGC
ACCTTCTCCTTGACTCGACCGGCGGCCCTGGTAACCGTCATCCGTTACCC
CCAGCACATGCGCGAAGCACTTTTCCCGCTTGCTACGCTATTGCCCGCAT
CCTTCTCTTCCGCGACCTCTATTGCTGCTTTTCCTGTCAAGCCAGCCTCC
TTTTTCCCTTCCCTCTCCTCCCTCCCCCGGGCCTTGCGACGCGCTTCCTC
CATCACGACCAGCACCCCTCCTTCTCTCCCTTCCTCTTCCTGCTTTCCTT
CCTCTACAACCACATCGCCCCTCACTCGCCCTCCCCTTTCCAGCAGCCTC
TCTGCCCTTCTCCTCCCCTACCTGATCCCTGCCCCCAACCCCCTGCTTGC
CTTGCTAGACCCTCTCTTCCCCCTCGCCATGGCCCTGGGACCCTACGCCT
TCCTCTACCACGCCCTCCATTGCTACCCGGAAGCCGCCCTCGCCCTGGAA
GAACTGTCCTTCCCCGCACTCGCCGTCGGCCTGGGCGTCGTCCACTTGGC
CCTCTCCCTTGCCCTACAGGCTCTAACCACCAGCAAGCTACAGGTGTATC
TGAACTTGGTCTCATTGGAATGCGTCGTGCTCAGCCAGGACCTGTGGGCG
CGGGCGCTCTTCACCCTTCATTTTCTAGCTTCCGCTGGGCTCACCATGAT
TGGGGCCTTGCTTGCGCAGGTTCTGGCCTGGGAGGGCGGGAGGGAGGGCG
GGAGGGAGGGAGGG

Synonyms

Publications