EWM26841.1, cds3827 (CDS) Nannochloropsis gaditana

Overview
NameEWM26841.1
Unique Namecds3827
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:175372..177585 -

Link to JBrowse

Properties
Property NameValue
Start range175372
Start range.
Protein idEWM26841.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100263g6.890.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:175372..177585 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM26841.1 vs. NCBI_GenBank
Match: gi|585108935|gb|EWM26841.1| (hypothetical protein Naga_100263g6, partial [Nannochloropsis gaditana])

HSP 1 Score: 1471.83 bits (3809), Expect = 0.000e+0
Identity = 738/738 (100.00%), Postives = 738/738 (100.00%), Query Frame = 0 
Query:    1 MNKLPPCIPSGNGRGGVVGNGGYTTPHKANVRSNMHESFPCVVGAEAQRIQAEVDEVVKRLIHEQAPSSAAPTPTLWSPHPTYPDIQVSSSGLFRITSTITAATFNLNDVSAAFIFFHIHTHSPQILQSLLFAQLERVKILALLPASCSGSLTSSNDGCVTGSRESHESEGNGSGTDSSIVKMTWAEKKHPAREFVVAQRTGRYRYPSPGASNSSEGSPHLDGDFVYYLATSFKNPHLIPSLLPALSQEAGPPSPVVAPPSPLTKAHAAFPLFALLVGPSTAQNALTLSVVLAPGILCQDSSLLPFLRSCLVAMGDYLIDTFSAHRSLNLALPDPTVALISPSATQHRILLRMPDTPSTSLPSPSLPSPSSSSPSSLPPPTYRLVTISYLPSSAGTFLLHGWASKDQSLFPSSYVQKTLHHAFLPGIWRKIRVVISAETKELSLVWRGLRKGKLHRYRVHVRTIPASALSRTLTYLHCLAYLPRVLMGKEETKDKVMTTRTFSLTRPAALVTVIRYPQHMREALFPLATLLPASFSSATSIAAFPVKPASFFPSLSSLPRALRRASSITTSTPPSLPSSSCFPSSTTTSPLTRPPLSSSLSALLLPYLIPAPNPLLALLDPLFPLAMALGPYAFLYHALHCYPEAALALEELSFPALAVGLGVVHLALSLALQALTTSKLQVYLNLVSLECVVLSQDLWARALFTLHFLASAGLTMIGALLAQVLAWEGGREGGREGG 738
            MNKLPPCIPSGNGRGGVVGNGGYTTPHKANVRSNMHESFPCVVGAEAQRIQAEVDEVVKRLIHEQAPSSAAPTPTLWSPHPTYPDIQVSSSGLFRITSTITAATFNLNDVSAAFIFFHIHTHSPQILQSLLFAQLERVKILALLPASCSGSLTSSNDGCVTGSRESHESEGNGSGTDSSIVKMTWAEKKHPAREFVVAQRTGRYRYPSPGASNSSEGSPHLDGDFVYYLATSFKNPHLIPSLLPALSQEAGPPSPVVAPPSPLTKAHAAFPLFALLVGPSTAQNALTLSVVLAPGILCQDSSLLPFLRSCLVAMGDYLIDTFSAHRSLNLALPDPTVALISPSATQHRILLRMPDTPSTSLPSPSLPSPSSSSPSSLPPPTYRLVTISYLPSSAGTFLLHGWASKDQSLFPSSYVQKTLHHAFLPGIWRKIRVVISAETKELSLVWRGLRKGKLHRYRVHVRTIPASALSRTLTYLHCLAYLPRVLMGKEETKDKVMTTRTFSLTRPAALVTVIRYPQHMREALFPLATLLPASFSSATSIAAFPVKPASFFPSLSSLPRALRRASSITTSTPPSLPSSSCFPSSTTTSPLTRPPLSSSLSALLLPYLIPAPNPLLALLDPLFPLAMALGPYAFLYHALHCYPEAALALEELSFPALAVGLGVVHLALSLALQALTTSKLQVYLNLVSLECVVLSQDLWARALFTLHFLASAGLTMIGALLAQVLAWEGGREGGREGG
Sbjct:    1 MNKLPPCIPSGNGRGGVVGNGGYTTPHKANVRSNMHESFPCVVGAEAQRIQAEVDEVVKRLIHEQAPSSAAPTPTLWSPHPTYPDIQVSSSGLFRITSTITAATFNLNDVSAAFIFFHIHTHSPQILQSLLFAQLERVKILALLPASCSGSLTSSNDGCVTGSRESHESEGNGSGTDSSIVKMTWAEKKHPAREFVVAQRTGRYRYPSPGASNSSEGSPHLDGDFVYYLATSFKNPHLIPSLLPALSQEAGPPSPVVAPPSPLTKAHAAFPLFALLVGPSTAQNALTLSVVLAPGILCQDSSLLPFLRSCLVAMGDYLIDTFSAHRSLNLALPDPTVALISPSATQHRILLRMPDTPSTSLPSPSLPSPSSSSPSSLPPPTYRLVTISYLPSSAGTFLLHGWASKDQSLFPSSYVQKTLHHAFLPGIWRKIRVVISAETKELSLVWRGLRKGKLHRYRVHVRTIPASALSRTLTYLHCLAYLPRVLMGKEETKDKVMTTRTFSLTRPAALVTVIRYPQHMREALFPLATLLPASFSSATSIAAFPVKPASFFPSLSSLPRALRRASSITTSTPPSLPSSSCFPSSTTTSPLTRPPLSSSLSALLLPYLIPAPNPLLALLDPLFPLAMALGPYAFLYHALHCYPEAALALEELSFPALAVGLGVVHLALSLALQALTTSKLQVYLNLVSLECVVLSQDLWARALFTLHFLASAGLTMIGALLAQVLAWEGGREGGREGG 738
The following BLAST results are available for this feature:
BLAST of EWM26841.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585108935|gb|EWM26841.1|0.000e+0100.00hypothetical protein Naga_100263g6, partial [Nanno... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3836rna3836Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications