rna3834, rna3834 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3834
Unique Name	rna3834
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2541
Alignment location	CM002462.1:171166..173878 +

Link to JBrowse

Properties


Property Name	Value
Product	iojap-like protein
Orig transcript id	gnl\|cribi\|Naga_100097g19.3743.mrna
Orig protein id	gnl\|cribi\|Naga_100097g19.3743
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:171166..173878 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100097g19	gene3690	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3834	rna3834-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26852.1	cds3825	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:171166..173878+
coding sequence from alignment at CM002462.1:171166..173878+

mRNA sequence

>rna3834 ID=rna3834|Name=rna3834|organism=Nannochloropsis gaditana|type=mRNA|length=2541bp
AGCAATAATAATCAGCATTTCACGTTGGCATGGACTCCTTCATGCTTCTA
AATCGTTTGTCATTTCCGCAATGACGTTGTGGACGCATTTACTGGCGTCA
TCTGGGCAAGTCCCAGCAATGTCGTCGGCATTGATAGGAGGTCAACTATT
CCAAGAGAGGTAACGCGAGGAAAAAGAACAAATAAATGATGTGCAGCCCG
CAGCCTGACGTACTACAGTAGTACTTCTATTTGACTCACAACTTCCAAGG
CTCCGCTTGGCGCTAGAAAATGGGTTGTCATCACATGTTCTTCACAGGCG
GCATGTTTCCCGGTCTCGAGCGTTGTCTTTGGGAGTCCTTGATTCCCTTC
CCTTGCATCAAGCATATACTGAGAACTCCACGACATGCATTTGTCTTTCA
AAAAGACACAAACTTGCACAGGATTTTGAGCACAGGATTGAATTGGAGTC
AACATGGCATCCCGAAAATACGATCTTGTGGTTTTTGGAGCCACGGGGTT
TACAGGTAGGTTGGTGGTTGAATACTACCTTCGTACCTACGGCCCCCCCT
CCCCCTCCTTCCAATGGGCCATCGCGGGACGCAACCAAGACAAACTCAGG
AAGGTAATCCAGGAATTGGAGACGCACAAAGGCGTGCCCGAGAGCAAGTA
TTTGGAGACATTGATCGGGTCATCCGAGGATTCGGTCTTTCTGGACGCCT
TGACGAAGCAGACGAAGGTGGTGGTCACAACGGTGGGTCCCTATGGGAAG
TATGGCAGCAAGCTGGTCGCCGCCTGCGCGGCGAACGGGACGCATTACGC
GGATTTGACAGGAGAGGTGCCCTGGATCGCCAAGATGATTGCCAGCCACG
AAATCACCGCGCAGGCGTCGGGCGCACGGATTTTGCACTGTTGCGGCTTC
GACTCCGAACCCTCTGACCTGGGGGCCCATGTGCTATACAACGCCATGCA
GAAACGGGGGCTGACCCCGACGGAGATCAAATTCGTCCTGGGATCCTCCC
AAGGGGGGGTGAGTGGGGGCACGGTGCATTCCCTGGCCGACGCCATGACG
AGTCCCGTGGAGGAGATGACAAACCCGTACATTTTGCTGCCGGACAAGAA
GAAGGGGAGCGTGACGGTGAAACAGACGCGGGGGGTTTGGTGGGATCAGG
ACGTTCGACGGTGGAACGCCCCCTTCATCATGGCGGGAATCAACACCAGG
GTGGTGGCCCGCTCCTCGTATCTGATGGACCGGGTCCCGTTCACCTACTT
GGAGACGCACAGTTTCCCCAAAGGGCTGTGGGGATGCTTGCAAGCCTGCA
TGTTGACCGTGGCGGTGGGCGTGGCGATGGTCTCGATGGCGGTCCCGCCC
ATCCGGTGGATTGTCTTGAAGGTGATTCCGCCAGGGTCCGGGCCCAGCGA
AAACGCGCGAAAGAAGGGCTACGCCTTGATCTACTTGGTGGGCAAAGGCT
TGAACAAGGAGGGGAAGGAGGAGGTAGTGAAAGGATCCGTGCGCATTTCG
GGGGATCCTGGTTACCAGGAGACGGCCAAGATGCTCGCAGAGACAGGCAT
GGCATTGGCCAAGGACAAGTTAAGCGTACAAGGAGGCTTTCATACGCCGG
CGTCCGCTCTGGGGGATACCCTGGTGGCGCGGCTGAAGCGACGGAATCTG
ATCATTGAGGTGGAAGAGTAGGCTGAGGAGGGGACTGATAGGAGTGTGGC
GGAGACGCAAATAAGGTCTGCTTGTGCTACAGAACAAGGAGACGAAGCGA
GGCGAAAGAAAGGGTACGAGCGTGGGTGCCATGGGGCCTGGTAGGTCGAA
ATGGAGGAGAATCGGTGGAGGAAGGGGAAAACAAGGTAGTATGTGGCATC
TGTGGGAAGGATATACGGTGTCTCGGGGGGTCGCTCATGCCTGTGCCATG
GAAAAGTGGATCGCACGACAAGCAAAGCAGGTGCCACAAGCAAACGTTTC
AAATTTTACAGCTACATTGAGGGAGAAGGGGGCAAGTTGTGTTGATTTTT
AATTTTGACGCGATAGGTATTGGTCCACAGACAAGACGAAGGTGGGGAAA
TTTTCAAGAGAGCAGGCATGCTGAGGTTCATCTCGCATAGAAAAAAACGA
GCACGACGCTTAACGTCAGCTATGTTACCGACATGTGGAGAGGAAAGGTT
TGCTCACGAAGAAAGTGGATTGCTTTTCAATACACCAATCAGCCTGTTCG
TAAAGGAAGCAGGAGGGAATGAATGGTTTGGAGGGAATATGGACGCGCAG
GACACACGAAGGAAAAGATGAGGCTTCTCCCAAAACGAAAGCTGTCAACG
GCCCGACCTGTACAAGACCGAAAATCGCGCGCTGATGCCAGCAAACGAGC
CTCGTTATCAACAAACACGGCTTTGTTGACCCTCGTATTTTTCGAAATAT
TTGTCGCAATTTGCTGTTCATCCTAGCGATATACATCCCTTTTTGCATTT
CTCTTGCACTAGCCGCATCCTATTCGAGCTATTCTCGAAGCTTACTCTCT
CTTTCCCATCCATCTATTGCCAACGCAGCTGCCCTCTCACC

protein sequence of rna3834

>rna3834-protein ID=rna3834-protein|Name=rna3834|organism=Nannochloropsis gaditana|type=polypeptide|length=452bp
MLSTTTKLMLRRSAVGRRDTSLWSSAGKITVRSLASDSKDVSNGSRGRSK
TSFSSTVSPSWPPSRQEMARMFEAGYESYEKNERKGMGRSAMAWKEDGHD
EAGGQEGSQGGAGGGSLSPHHDGYDATEMTRQRMELSKATTAATLARTDA
KYLNEEERKAHDAEMKALHAGIVAGGGGEDPDDSPSATGGGNHGLGGRGS
GREGEGTKGGAVAKAQAGSNSDPEKSLEKWTWARPSRLAQEEAQGRKTSR
AGAIPVLPRTLLRPAEVVEALVALGGEDVASVDIRGKGNFNAEAMIFASG
RSGGHLRRMADTVVGALKARGIEEMEAPGVTGAEGYDCEDWMIVDGGNVI
VHLMEPSQRAALGLEGFWGEGEEGRKGGRVGDLVMPVAATASEEAWSQAH
DALLERYPADEEYAPEREEEARRERELRRVLGPGGKGMGERRRRRKVVGG
GR

mRNA from alignment at CM002462.1:171166..173878+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3834 ID=rna3834|Name=rna3834|organism=Nannochloropsis gaditana|type=mRNA|length=2713bp|location=Sequence derived from alignment at CM002462.1:171166..173878+ (Nannochloropsis gaditana)
GAAGGTTACAGGGTGGCGTCGGGGGCTTGAAGGTCAAAAATATAACCCCA
ACTTTGTTGAAGTGTCGCGCGTTTACGTTCAATTGCACAAAATTTTGACG
TGTGGAGGTAAATGTAGGCATCAGGAGCGGTGTTGTGCCCCGCCTCAGCT
TACTAGGGAGGCCTGTCAAGGAAGAGACGAGCGACTTCAACAAGAGGGTG
GCTCAAGGAGACAGATGCCAGGGTGACCATCTTGGGGCAAATAAACACCG
TATGAAACCTCATAGACTTACTGAACACTTTCACAGCCCTGCTTATAACC
GTCAGCCCTTTAAGGACGCTCCGCACTGCGGACGCTTCTTTCAACCATGC
TTTCTACCACGACCAAATTGATGCTCCGGCGTTCTGCCGTTGGGCGCCGT
GACACCTCCCTCTGGTCCTCCGCGGGAAAAATAACAGGTAAACAAATAGC
ACAATTCTCATTCTCGATGCCCATATCGATTATTCAAGCCGTTTCAATCA
ACTTCCGTGTTTTTAATTGCATAAGGTTGTTTTCTTCTTTTATGTCCTGG
CCTCGAGCGGAACGGCACACTCCTGCCGTCATATACCCATCtagaaggaa
agggaccaAATGAGTTTTGTCTTGGCGCGATGTGCTTCATAGACGTGTAT
TATGCTGTATCAAAAATAAACGAGCCTCTGGAAATGTTACAGCGGTGTTC
AGCCCATAAAATGAGACGTTGTCATTTCCGTGCTGCTTCCCCTCGGTTAC
ATGAAAACCATGCGAAGACAAACCATACATTGGTTGTGAATGTAGCTGGG
TTCGTGTAACCTTCATTCTAaatcttcccaccctctatTACACAGTCCGC
TCCCTAGCCTCGGACAGCAAGGATGTCAGTAACGGGAGTAGAGGCAGAAG
CAAAACATCCTTTTCGTCCACCGTTTCCCCGTCCTGGCCCCCCAGCCGGC
AGGAAATGGCGCGCATGTTCGAGGCGGGTTACGAGAGTTACGAGAAGaat
gagaggaaaggcatgGGTCGAAGTGCGATGGCCTGGAAGGAAGACGGACA
cgacgaggcggggggccaggaagggagccagggcggggccggggggggat
cCCTCTCTCCGCACCATGATGGCTACGATGCGACGGAAATGACCCGGCAG
CGGATGGAATTGTCGAAAGCCACGACAGCCGCTACCCTTGCACGCACGGA
CGCCAAGTActtgaacgaggaggagaggaaggcccaCGATGCCGAAATGA
AGGCCCTACATGCCGGGATCGtcgcaggcggggggggggaggacccTGAC
GACTCCCCATcggccacgggggggggcaatcATGGCTTGGGCGGTAGAGG
AAGTGgtagagaaggggaggggacgaaaggcggggccgtggcgaAGGCCC
AGGCTGGCAGCAATTCCGATCCCGAGAAGAGCTTGGAAAAATGGACGTGG
GCCCGACCCTCACGTCTCgcacaggaggaggcgcaaggCAGGAAGACGTC
GCGGGCCGGGGCGATTCCCGTGTTGCCTCGGACTTTGTTGAGGCCggccg
aggtggtggaggcgttggtCGCtctcgggggggaggacgtggccagcGTG
GATATCCGTGGGAAAGGCAATTTCAACGCGGAGGCCATGATTTTCGCCTC
GGGAAGGAGCGGCGGGCATTTGCGTCGGATGGCCGACACGGTGGTCGGCG
CCTTGAAAGCCCGGGGCAtagaagagatggaggcgccgggggtgacgggg
gcggagggataTGACTGTGAGGATTGGATGATCGTGGACGGCGGGAACGT
GATTGTGCATCTGATGGAGCCCTCCCAACGGGCGGCGCTGGGCCTGGAGG
GGTtctggggagagggggaggaaggaaggaagggagggagggtgggcgac
CTGGTGATGCCTgtggcggcgacggcctcggaggaggcctggagCCAAGC
GCACGACGCGCTCTTGGAGCGATACCCCGCGGACGAAGAGTACGCacccg
agagggaggaagaagcccggcgggaaagggagctgCGGCGGGTGTTAGgt
ccgggggggaaagggatgggggagcggaggcggcggcggaaagtcgtggg
cgggggcagatGAAGCaccgagggcggaggtggaaagggatTGGAAGAGC
GAAAAGCAGGATGACgtgggggcgagaaggagaaacaggCTTGGGAAAGA
GTGGCGCCACTAGGGGTCACAAAGATGCTCGTCAGGTGTTTGCACATTGA
ATTGCGTGATATTGTAAAGAGGATGCATGGGAAGACTGGTCCAAATTGCC
ACTGCTTTGTTGATTGATATGCATGGGGGGGAGCCTCGAGCCTAGTCTCC
GACTGTAGCGCGCGTGCCGGAGGGGCCCTGGAGACAAGAGCATCAGGTTA
AGAGAAACGCTGTATTTTTACAGGAAGCGCAGAACAACAGGATAGGAAAG
GGGTTCCAAGACGTGTGGTGAGAGTAGAGGTACAAGGGGAAGAATTCGCG
TCGGTCGTACAGGCATGAGGAGAAataggggggagggatgggggatAAGT
GAAAGCGAGCTCTAGGAGGTCAGCGAGGATGCAACAGAAGGAAAACAAGC
GCTTGGCAGTCAGAATGAGACTTGAGTCAATCTTTCATTCCCCATGATGA
GTGCTCTGCAATTATCACTCCATTACCCACCCGGCATTCTTGGCGCTAGA
TTTcacaccgcct

Coding sequence (CDS) from alignment at CM002462.1:171166..173878+

>rna3834 ID=rna3834|Name=rna3834|organism=Nannochloropsis gaditana|type=CDS|length=2718bp|location=Sequence derived from alignment at CM002462.1:171166..173878+ (Nannochloropsis gaditana)
ATGCTTTCTACCACGACCAAATTGATGCTCCGGCGTTCTGCCGTTGGGCG
CCGTGACACCTCCCTCTGGTCCTCCGCGGGAAAAATAACAGTCCGCTCCC
TAGCCTCGGACAGCAAGGATGTCAGTAACGGGAGTAGAGGCAGAAGCAAA
ACATCCTTTTCGTCCACCGTTTCCCCGTCCTGGCCCCCCAGCCGGCAGGA
AATGGCGCGCATGTTCGAGGCGGGTTACGAGAGTTACGAGAAGaatgaga
ggaaaggcatgGGTCGAAGTGCGATGGCCTGGAAGGAAGACGGACAcgac
gaggcggggggccaggaagggagccagggcggggccggggggggatcCCT
CTCTCCGCACCATGATGGCTACGATGCGACGGAAATGACCCGGCAGCGGA
TGGAATTGTCGAAAGCCACGACAGCCGCTACCCTTGCACGCACGGACGCC
AAGTActtgaacgaggaggagaggaaggcccaCGATGCCGAAATGAAGGC
CCTACATGCCGGGATCGtcgcaggcggggggggggaggacccTGACGACT
CCCCATcggccacgggggggggcaatcATGGCTTGGGCGGTAGAGGAAGT
GgtagagaaggggaggggacgaaaggcggggccgtggcgaAGGCCCAGGC
TGGCAGCAATTCCGATCCCGAGAAGAGCTTGGAAAAATGGACGTGGGCCC
GACCCTCACGTCTCgcacaggaggaggcgcaaggCAGGAAGACGTCGCGG
GCCGGGGCGATTCCCGTGTTGCCTCGGACTTTGTTGAGGCCggccgaggt
ggtggaggcgttggtCGCtctcgggggggaggacgtggccagcGTGGATA
TCCGTGGGAAAGGCAATTTCAACGCGGAGGCCATGATTTTCGCCTCGGGA
AGGAGCGGCGGGCATTTGCGTCGGATGGCCGACACGGTGGTCGGCGCCTT
GAAAGCCCGGGGCAtagaagagatggaggcgccgggggtgacgggggcgg
agggataTGACTGTGAGGATTGGATGATCGTGGACGGCGGGAACGTGATT
GTGCATCTGATGGAGCCCTCCCAACGGGCGGCGCTGGGCCTGGAGGGGTt
ctggggagagggggaggaaggaaggaagggagggagggtgggcgacCTGG
TGATGCCTgtggcggcgacggcctcggaggaggcctggagCCAAGCGCAC
GACGCGCTCTTGGAGCGATACCCCGCGGACGAAGAGTACGCacccgagag
ggaggaagaagcccggcgggaaagggagctgCGGCGGGTGTTAGgtccgg
gggggaaagggatgggggagcggaggcggcggcggaaagtcgtgggcggg
ggcagatGAATGCTTTCTACCACGACCAAATTGATGCTCCGGCGTTCTGC
CGTTGGGCGCCGTGACACCTCCCTCTGGTCCTCCGCGGGAAAAATAACAG
TCCGCTCCCTAGCCTCGGACAGCAAGGATGTCAGTAACGGGAGTAGAGGC
AGAAGCAAAACATCCTTTTCGTCCACCGTTTCCCCGTCCTGGCCCCCCAG
CCGGCAGGAAATGGCGCGCATGTTCGAGGCGGGTTACGAGAGTTACGAGA
AGaatgagaggaaaggcatgGGTCGAAGTGCGATGGCCTGGAAGGAAGAC
GGACAcgacgaggcggggggccaggaagggagccagggcggggccggggg
gggatcCCTCTCTCCGCACCATGATGGCTACGATGCGACGGAAATGACCC
GGCAGCGGATGGAATTGTCGAAAGCCACGACAGCCGCTACCCTTGCACGC
ACGGACGCCAAGTActtgaacgaggaggagaggaaggcccaCGATGCCGA
AATGAAGGCCCTACATGCCGGGATCGtcgcaggcggggggggggaggacc
cTGACGACTCCCCATcggccacgggggggggcaatcATGGCTTGGGCGGT
AGAGGAAGTGgtagagaaggggaggggacgaaaggcggggccgtggcgaA
GGCCCAGGCTGGCAGCAATTCCGATCCCGAGAAGAGCTTGGAAAAATGGA
CGTGGGCCCGACCCTCACGTCTCgcacaggaggaggcgcaaggCAGGAAG
ACGTCGCGGGCCGGGGCGATTCCCGTGTTGCCTCGGACTTTGTTGAGGCC
ggccgaggtggtggaggcgttggtCGCtctcgggggggaggacgtggcca
gcGTGGATATCCGTGGGAAAGGCAATTTCAACGCGGAGGCCATGATTTTC
GCCTCGGGAAGGAGCGGCGGGCATTTGCGTCGGATGGCCGACACGGTGGT
CGGCGCCTTGAAAGCCCGGGGCAtagaagagatggaggcgccgggggtga
cgggggcggagggataTGACTGTGAGGATTGGATGATCGTGGACGGCGGG
AACGTGATTGTGCATCTGATGGAGCCCTCCCAACGGGCGGCGCTGGGCCT
GGAGGGGTtctggggagagggggaggaaggaaggaagggagggagggtgg
gcgacCTGGTGATGCCTgtggcggcgacggcctcggaggaggcctggagC
CAAGCGCACGACGCGCTCTTGGAGCGATACCCCGCGGACGAAGAGTACGC
acccgagagggaggaagaagcccggcgggaaagggagctgCGGCGGGTGT
TAGgtccgggggggaaagggatgggggagcggaggcggcggcggaaagtc
gtgggcgggggcagatGA

Synonyms

Publications