EWM26852.1, cds3825 (CDS) Nannochloropsis gaditana

Overview
NameEWM26852.1
Unique Namecds3825
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:171512..171602 +
Alignment locationCM002462.1:172011..173278 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26852.1
Productiojap-like protein
Orig transcript idgnl|cribi|Naga_100097g19.3743.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:171512..171602 +
CM002462.1supercontigCM002462.1:172011..173278 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR004394Iojap/RsfS/C7orf30
IPR025656Oligomer_dom
Homology
BLAST of EWM26852.1 vs. NCBI_GenBank
Match: gi|585108947|gb|EWM26852.1| (iojap-like protein [Nannochloropsis gaditana])

HSP 1 Score: 897.886 bits (2319), Expect = 0.000e+0
Identity = 452/452 (100.00%), Postives = 452/452 (100.00%), Query Frame = 0
Query:    1 MLSTTTKLMLRRSAVGRRDTSLWSSAGKITVRSLASDSKDVSNGSRGRSKTSFSSTVSPSWPPSRQEMARMFEAGYESYEKNERKGMGRSAMAWKEDGHDEAGGQEGSQGGAGGGSLSPHHDGYDATEMTRQRMELSKATTAATLARTDAKYLNEEERKAHDAEMKALHAGIVAGGGGEDPDDSPSATGGGNHGLGGRGSGREGEGTKGGAVAKAQAGSNSDPEKSLEKWTWARPSRLAQEEAQGRKTSRAGAIPVLPRTLLRPAEVVEALVALGGEDVASVDIRGKGNFNAEAMIFASGRSGGHLRRMADTVVGALKARGIEEMEAPGVTGAEGYDCEDWMIVDGGNVIVHLMEPSQRAALGLEGFWGEGEEGRKGGRVGDLVMPVAATASEEAWSQAHDALLERYPADEEYAPEREEEARRERELRRVLGPGGKGMGERRRRRKVVGGGR 452
            MLSTTTKLMLRRSAVGRRDTSLWSSAGKITVRSLASDSKDVSNGSRGRSKTSFSSTVSPSWPPSRQEMARMFEAGYESYEKNERKGMGRSAMAWKEDGHDEAGGQEGSQGGAGGGSLSPHHDGYDATEMTRQRMELSKATTAATLARTDAKYLNEEERKAHDAEMKALHAGIVAGGGGEDPDDSPSATGGGNHGLGGRGSGREGEGTKGGAVAKAQAGSNSDPEKSLEKWTWARPSRLAQEEAQGRKTSRAGAIPVLPRTLLRPAEVVEALVALGGEDVASVDIRGKGNFNAEAMIFASGRSGGHLRRMADTVVGALKARGIEEMEAPGVTGAEGYDCEDWMIVDGGNVIVHLMEPSQRAALGLEGFWGEGEEGRKGGRVGDLVMPVAATASEEAWSQAHDALLERYPADEEYAPEREEEARRERELRRVLGPGGKGMGERRRRRKVVGGGR
Sbjct:    1 MLSTTTKLMLRRSAVGRRDTSLWSSAGKITVRSLASDSKDVSNGSRGRSKTSFSSTVSPSWPPSRQEMARMFEAGYESYEKNERKGMGRSAMAWKEDGHDEAGGQEGSQGGAGGGSLSPHHDGYDATEMTRQRMELSKATTAATLARTDAKYLNEEERKAHDAEMKALHAGIVAGGGGEDPDDSPSATGGGNHGLGGRGSGREGEGTKGGAVAKAQAGSNSDPEKSLEKWTWARPSRLAQEEAQGRKTSRAGAIPVLPRTLLRPAEVVEALVALGGEDVASVDIRGKGNFNAEAMIFASGRSGGHLRRMADTVVGALKARGIEEMEAPGVTGAEGYDCEDWMIVDGGNVIVHLMEPSQRAALGLEGFWGEGEEGRKGGRVGDLVMPVAATASEEAWSQAHDALLERYPADEEYAPEREEEARRERELRRVLGPGGKGMGERRRRRKVVGGGR 452          
BLAST of EWM26852.1 vs. NCBI_GenBank
Match: gi|299472221|emb|CBN77191.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 112.464 bits (280), Expect = 7.393e-25
Identity = 62/140 (44.29%), Postives = 83/140 (59.29%), Query Frame = 0
Query:  230 WTWARPSRLAQEEAQGRKTSRAGA-IPVLPRTLLRPAEVVEALVALGGEDVASVDIRGKGNFNAEAMIFASGRSGGHLRRMADTVVGALKARGIEEMEAPGVTGAEGYDCEDWMIVDGGNVIVHLMEPSQRAALGLEGFW 368
            WTW+ PS          +  R GA I V+PR  L   EVV+A+ A GG DV ++D+RGKG    + M+F +  +   +RR+A+ VV ALK R +  + A G+TGAEG DC+DWM+VD  N+IVH M    R  L LE  W
Sbjct:   67 WTWSTPS--------PNRPGRGGAEIAVIPRVNLTVDEVVKAVEAQGGTDVRAIDLRGKGAGMGDFMVFCTAATPLQMRRLANMVVQALKQRKL--VNAMGITGAEGIDCDDWMLVDCDNLIVHFMTAEARQELDLETHW 196          
BLAST of EWM26852.1 vs. NCBI_GenBank
Match: gi|970664527|gb|KUG01419.1| (Ribosomal silencing factor RsfS [Phytophthora nicotianae])

HSP 1 Score: 104.375 bits (259), Expect = 1.135e-22
Identity = 56/134 (41.79%), Postives = 75/134 (55.97%), Query Frame = 0
Query:  250 RAGAIPVLPRTLLRPAEVVEALVALGGEDVASVDIRGKGNFNAEAMIFASGRSGGHLRRMADTVVGALKARGIEEMEAPGVTGAEGYDCEDWMIVDGGNVIVHLMEPSQRAALGLEGFWGEGEEGRKGGRVGDL 383
             A  IP +P+T L   EV +AL      DV +VD+ GK +  A+ M+FA+GRS  H+RRMAD ++ ++KAR   E+        EG DC+DWMI D  N++VHLM    R  L LE  W E     K    GD+
Sbjct:   12 HADIIPAIPQTYLTIDEVQQALEREKAIDVYTVDLAGKSSL-ADFMVFATGRSQAHMRRMADLLIKSMKAR---ELVDDFDYAVEGRDCDDWMIADCNNIVVHLMRADTRRILNLEDHW-ENMVDDKHSVYGDM 140          
BLAST of EWM26852.1 vs. NCBI_GenBank
Match: gi|970644254|gb|KUF85182.1| (Ribosomal silencing factor RsfS [Phytophthora nicotianae])

HSP 1 Score: 105.145 bits (261), Expect = 1.187e-21
Identity = 56/134 (41.79%), Postives = 75/134 (55.97%), Query Frame = 0
Query:  250 RAGAIPVLPRTLLRPAEVVEALVALGGEDVASVDIRGKGNFNAEAMIFASGRSGGHLRRMADTVVGALKARGIEEMEAPGVTGAEGYDCEDWMIVDGGNVIVHLMEPSQRAALGLEGFWGEGEEGRKGGRVGDL 383
             A  IP +P+T L   EV +AL      DV +VD+ GK +  A+ M+FA+GRS  H+RRMAD ++ ++KAR   E+        EG DC+DWMI D  N++VHLM    R  L LE  W E     K    GD+
Sbjct:  149 HADIIPAIPQTYLTIDEVQQALEREKAIDVYTVDLAGKSSL-ADFMVFATGRSQAHMRRMADLLIKSMKAR---ELVDDFDYAVEGRDCDDWMIADCNNIVVHLMRADTRRILNLEDHW-ENMVDDKHSVYGDM 277          
BLAST of EWM26852.1 vs. NCBI_GenBank
Match: gi|566022059|gb|ETI44970.1| (iojap-like ribosome-associated protein [Phytophthora parasitica P1569] >gi|567988034|gb|ETL38319.1| iojap-like ribosome-associated protein [Phytophthora parasitica] >gi|568017256|gb|ETL91433.1| iojap-like ribosome-associated protein [Phytophthora parasitica] >gi|568047677|gb|ETM44752.1| iojap-like ribosome-associated protein [Phytophthora parasitica] >gi|570949467|gb|ETP14724.1| iojap-like ribosome-associated protein [Phytophthora parasitica CJ01A1] >gi|970647476|gb|KUF87287.1| hypothetical protein AM588_10001548 [Phytophthora nicotianae])

HSP 1 Score: 105.145 bits (261), Expect = 1.235e-21
Identity = 56/134 (41.79%), Postives = 75/134 (55.97%), Query Frame = 0
Query:  250 RAGAIPVLPRTLLRPAEVVEALVALGGEDVASVDIRGKGNFNAEAMIFASGRSGGHLRRMADTVVGALKARGIEEMEAPGVTGAEGYDCEDWMIVDGGNVIVHLMEPSQRAALGLEGFWGEGEEGRKGGRVGDL 383
             A  IP +P+T L   EV +AL      DV +VD+ GK +  A+ M+FA+GRS  H+RRMAD ++ ++KAR   E+        EG DC+DWMI D  N++VHLM    R  L LE  W E     K    GD+
Sbjct:  149 HADIIPAIPQTYLTIDEVQQALEREKAIDVYTVDLAGKSSL-ADFMVFATGRSQAHMRRMADLLIKSMKAR---ELVDDFDYAVEGRDCDDWMIADCNNIVVHLMRADTRRILNLEDHW-ENMVDDKHSVYGDM 277          
BLAST of EWM26852.1 vs. NCBI_GenBank
Match: gi|570325595|gb|ETO73543.1| (iojap-like ribosome-associated protein [Phytophthora parasitica P1976])

HSP 1 Score: 105.145 bits (261), Expect = 1.247e-21
Identity = 56/134 (41.79%), Postives = 75/134 (55.97%), Query Frame = 0
Query:  250 RAGAIPVLPRTLLRPAEVVEALVALGGEDVASVDIRGKGNFNAEAMIFASGRSGGHLRRMADTVVGALKARGIEEMEAPGVTGAEGYDCEDWMIVDGGNVIVHLMEPSQRAALGLEGFWGEGEEGRKGGRVGDL 383
             A  IP +P+T L   EV +AL      DV +VD+ GK +  A+ M+FA+GRS  H+RRMAD ++ ++KAR   E+        EG DC+DWMI D  N++VHLM    R  L LE  W E     K    GD+
Sbjct:  149 HADIIPAIPQTYLTIDEVQQALEREKAIDVYTVDLAGKSSL-ADFMVFATGRSQAHMRRMADLLIKSMKAR---ELVDDFDYAVEGRDCDDWMIADCNNIVVHLMRADTRRILNLEDHW-ENMVDDKHSVYGDM 277          
BLAST of EWM26852.1 vs. NCBI_GenBank
Match: gi|675169215|ref|XP_008893492.1| (iojap-like ribosome-associated protein [Phytophthora parasitica INRA-310] >gi|567959323|gb|ETK84896.1| iojap-like ribosome-associated protein [Phytophthora parasitica] >gi|568107103|gb|ETN21733.1| iojap-like ribosome-associated protein [Phytophthora parasitica INRA-310] >gi|570982811|gb|ETP42792.1| iojap-like ribosome-associated protein [Phytophthora parasitica P10297])

HSP 1 Score: 105.145 bits (261), Expect = 1.389e-21
Identity = 56/134 (41.79%), Postives = 75/134 (55.97%), Query Frame = 0
Query:  250 RAGAIPVLPRTLLRPAEVVEALVALGGEDVASVDIRGKGNFNAEAMIFASGRSGGHLRRMADTVVGALKARGIEEMEAPGVTGAEGYDCEDWMIVDGGNVIVHLMEPSQRAALGLEGFWGEGEEGRKGGRVGDL 383
             A  IP +P+T L   EV +AL      DV +VD+ GK +  A+ M+FA+GRS  H+RRMAD ++ ++KAR   E+        EG DC+DWMI D  N++VHLM    R  L LE  W E     K    GD+
Sbjct:  149 HADIIPAIPQTYLTIDEVQQALEREKAIDVYTVDLAGKSSL-ADFMVFATGRSQAHMRRMADLLIKSMKAR---ELVDDFDYAVEGRDCDDWMIADCNNIVVHLMRADTRRILNLEDHW-ENMVDDKHSVYGDM 277          
BLAST of EWM26852.1 vs. NCBI_GenBank
Match: gi|953502906|emb|CEG36233.1| (iojap-like ribosome-associated protein [Plasmopara halstedii])

HSP 1 Score: 102.834 bits (255), Expect = 8.214e-21
Identity = 57/134 (42.54%), Postives = 73/134 (54.48%), Query Frame = 0
Query:  250 RAGAIPVLPRTLLRPAEVVEALVALGGEDVASVDIRGKGNFNAEAMIFASGRSGGHLRRMADTVVGALKARGIEEMEAPGVTGAEGYDCEDWMIVDGGNVIVHLMEPSQRAALGLEGFWGEGEEGRKGGRVGDL 383
             A  IP +P+T L   EV +AL      DV +VD+ GK    A  M+F +GRS  H+RRMAD ++ +LKAR I +    GV   EG DC+DWMI D  N++VH M    R  L LE  W E     K    GD+
Sbjct:  146 HADIIPPIPQTYLSLDEVQKALEREKAIDVYTVDLSGKSGL-ANYMVFVTGRSQAHMRRMADLLIKSLKAREIVDDFDYGV---EGRDCDDWMIADCNNIVVHFMRADTRRILALEDHW-ENMVDDKHSVYGDM 274          
BLAST of EWM26852.1 vs. NCBI_GenBank
Match: gi|1214699246|gb|OWZ12087.1| (Iojap-like ribosome-associated protein [Phytophthora megakarya])

HSP 1 Score: 101.679 bits (252), Expect = 2.137e-20
Identity = 56/134 (41.79%), Postives = 76/134 (56.72%), Query Frame = 0
Query:  250 RAGAIPVLPRTLLRPAEVVEALVALGGEDVASVDIRGKGNFNAEAMIFASGRSGGHLRRMADTVVGALKARGIEEMEAPGVTGAEGYDCEDWMIVDGGNVIVHLMEPSQRAALGLEGFWGEGEEGRKGGRVGDL 383
             A  IP +P++ L   EV +AL      DV +VD+ GK +  A+ M+FA+GRS  H+RRMAD ++ ++KAR I +     V   EG DC+DWMI D  N++VHLM    R  L LE  W E     K    GD+
Sbjct:  149 HADIIPPIPQSYLTIEEVKDALEREKAIDVYTVDLAGKTSL-ADFMVFATGRSQAHMRRMADLLIKSMKAREIVDDFDYAV---EGRDCDDWMIADCNNIVVHLMRADTRRILALEDHW-ENMVDDKHSVYGDM 277          
BLAST of EWM26852.1 vs. NCBI_GenBank
Match: gi|301108531|ref|XP_002903347.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262097719|gb|EEY55771.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 98.5969 bits (244), Expect = 2.381e-19
Identity = 51/119 (42.86%), Postives = 69/119 (57.98%), Query Frame = 0
Query:  250 RAGAIPVLPRTLLRPAEVVEALVALGGEDVASVDIRGKGNFNAEAMIFASGRSGGHLRRMADTVVGALKARGIEEMEAPGVTGAEGYDCEDWMIVDGGNVIVHLMEPSQRAALGLEGFW 368
             A  IP + +  L   EV +AL      DV +VD+ GK +  A+ M+FA+GRS  H+RRMAD ++ ++KAR I +     V   EG DC+DWMI D  N++VHLM    R  L LE  W
Sbjct:  148 HADIIPAISQIYLTIDEVQQALEREKAIDVYTVDLAGKTSL-ADFMVFATGRSQAHMRRMADLLIKSMKAREIVDDFDYAV---EGRDCDDWMIADCNNIVVHLMRADTRRILNLEDHW 262          
The following BLAST results are available for this feature:
BLAST of EWM26852.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108947|gb|EWM26852.1|0.000e+0100.00iojap-like protein [Nannochloropsis gaditana][more]
gi|299472221|emb|CBN77191.1|7.393e-2544.29conserved unknown protein [Ectocarpus siliculosus][more]
gi|970664527|gb|KUG01419.1|1.135e-2241.79Ribosomal silencing factor RsfS [Phytophthora nico... [more]
gi|970644254|gb|KUF85182.1|1.187e-2141.79Ribosomal silencing factor RsfS [Phytophthora nico... [more]
gi|566022059|gb|ETI44970.1|1.235e-2141.79iojap-like ribosome-associated protein [Phytophtho... [more]
gi|570325595|gb|ETO73543.1|1.247e-2141.79iojap-like ribosome-associated protein [Phytophtho... [more]
gi|675169215|ref|XP_008893492.1|1.389e-2141.79iojap-like ribosome-associated protein [Phytophtho... [more]
gi|953502906|emb|CEG36233.1|8.214e-2142.54iojap-like ribosome-associated protein [Plasmopara... [more]
gi|1214699246|gb|OWZ12087.1|2.137e-2041.79Iojap-like ribosome-associated protein [Phytophtho... [more]
gi|301108531|ref|XP_002903347.1|2.381e-1942.86conserved hypothetical protein [Phytophthora infes... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3834rna3834Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications