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Properties
| Property Name | Value |
|---|
| Product | Pentatricopeptide repeat containing protein |
| Orig transcript id | gnl|cribi|Naga_100097g15.3759.mrna |
| Orig protein id | gnl|cribi|Naga_100097g15.3759 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:160598..163229 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3830 ID=rna3830|Name=rna3830|organism=Nannochloropsis gaditana|type=mRNA|length=789bp
ATGCCATCAATATCAACCAGAGCCCCCACTACAGTTCCCTCCATTTCTAC
TAGTGTTCCAAGCATTAGCCCTACGACACTTCCAAAACCAGTCGATGAGA
ATGCGCCAGAAAATAACAATAATGAGGAGGACCCGTTCGACGATATGTAT
GACGACGAGGTTGAGAACCCCGTGGTTCAAATTGACTTACAGGTCGCGGG
AGCCACAGAAGAGCAAATAGAAGCAGTTGCAGGCCTTGTCCAGTTTATCG
CCGGCATGTCTTTTCCGGGTGCTAATCGCTCTGACATCAATGTCACGGTT
GAGTGGAGGGGCACTGTTGTTGAGATGGATAGCAGCCAGACCCCACTTCC
CCGCCGATTGCGATCAGTAGGGGAAGTACGAGCTCTTCCATCCTCTCGTC
GTGAGACTAGCGGCAAAGATAATGAAAACAAACGCTGTAAACTGTCTGTT
GGGGACAGCGTGAATGTGACCACTATCACCATCCATGGTCTTCATGGTGA
GACCTATGTCAGGCAGATCGAGAGTTTCCTCGCGCTGATCTCGTCCGGAA
TCATACCCGTGGTGATCCTGGACCACATTCCCGTTTTTAAATTTGTCTGT
GATTCAGAAGTGCGCATGAGCAACGAAGCCCCCTCCCTTCGCTTTCAGCC
GATGGACGTCCAAGAAACAGAAAAGACAGGAAAAGATAAAACGAATGTAA
CGGCCATTGTAATACCTGTTGTATTTGGCATCGCTCTTGTCGGAGCGGTT
GGATTCCTACTTTTAAGAAAATTCAGTAATAGGGCGTAG back to topprotein sequence of rna3830 >rna3830-protein ID=rna3830-protein|Name=rna3830|organism=Nannochloropsis gaditana|type=polypeptide|length=689bp
MQRFIALRKLAAGGFLTPVLSPHHGRYLSSIFSGNISPDDSAAPTLGQNT
SRGTPMQEELRASPSPSPTVAASPPLPSAQTISINPSSSSEEQEKLFQQA
ALELGQAWKQAAGVKPGMARFERLLQGEDLDAMERCWRQTVGKERLNFWH
VHTFLGLLLDDRFLNARPQSGAVPAEFEGGQKTGGKRGETLRRRLRLASS
LFKDMVMQKIARERKAGGSPLEGGALNAAGATVSSDPDPTPQHWQRVYNL
MLRACANIADGVCALEVWDHMQETGFSAGEETMSFVVMALAKARMRLEAQ
ARFEEAVEKGLVLSPAAKSCLISCHARALDGEAAARVLEVTVEDGRSPEN
PGVVSGNMVTKVLEVGIETGNVKVLRQGLNALTMPVDRGMGLQILNMAAK
RGDGQLAMDVFYALEGWGFSPTASVFNAVIQALGISKNDVAMLKALNEMC
ALGFTPSEGTLHLVARQLSKSVARLDEAYNNLVALQKAYQDHVRQEAEGR
QEQQAVDGKDGEGADPAFVPNAPLPVSGSAVYLIVLGCAYANQLDRAFAT
FEDYQPVFGLAYDTNASNALLLACLRSRSLQVGAAISVMNEMDRLGIAPN
DETCHLMVRILAQAKEVDVKRMESVLSHMDEKGVVLRPATQRLLILWYAL
LGEHDRAQELLSGMHAQGCYVPSYFEERLKQIRLNGDRL back to topmRNA from alignment at CM002462.1:160598..163229- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3830 ID=rna3830|Name=rna3830|organism=Nannochloropsis gaditana|type=mRNA|length=2632bp|location=Sequence derived from alignment at CM002462.1:160598..163229- (Nannochloropsis gaditana)
AGTGTCCATCGCCATTATTTTTGGTGTTGTTCTGGTGTATCTGGGTGGTG
ATAGATGTTTGTTCGTCCTTAAAAATGTAAAGAAGGCGGTTGAATTCTCA
CGTTACCATGGCCTTCCTCTTGTCTATACTGTCTTGTGGACATTTGATTG
CCATTTCCCCCAAATGAACAACGTTCCCAACGTACTTGCGCAATCACATG
TATTTTACAGTTAGAACGGTATGCAGCGGTTTATCGCGTTGCGAAAATTG
GCAGCGGGGGGGTTCCTTACACCTGTCTTGTCGCCGCATCATGGAAGGTA
CGTTTCTCTGCTATCAGTTTTGCAGTCGTATAGAGGTGATCGAATTCGTT
CTGATTCCATGGAAGCCGACACATGCAAAAGCTAATCAGTCTCCGCTCTG
AGATGGGTGTGGAATGTATGGTAGAACTCTGCACCTGCTTCTTCTCTGCG
TGCGCTCTCCTGCCTCGTCGGGCTGCTCACTACTCTTTCTTGTTACAGAT
ATTTATCCTCGATATTTAGCGGGAATATCTCTCCGGATGACTCAGCTGCT
CCCACTCTAGGCCAGAACACCAGTCGTGGTACACCCATGCAGGAAGAACT
CCGTGCTTCGCCCTCGCCGTCCCCGACGGTTGCCGCGTCTCCCCCCCTAC
CATCCGCGCAAACCATATCCATAAATCCCTCCTCGAGCTCGGAAGAGCAG
GAGAAACTTTTCCAACAAGCAGCACTTGAGCTTGGACAGGCTTGGAAACA
AGCGGCAGGGGTCAAACCAGGCATGGCACGTTTCGAACGCCTACTCCAAG
GCGAGGATCTAGATGCCATGGAGCGGTGCTGGAGGCAGACGGTGGGAAAG
GAAAGGCTGAATTTCTGGCATGTGCACACGTTTTTGGGACTGCTGTTGGA
CGATCGATTCCTGAATGCACGTCCCCAGAGCGGGGCTGTTCCGGCAGAAT
TTGAGGGAGGGCAGAAGACAGGGGGTAAGCGCGGGGAGACCCTTCGTCGG
CGCTTACGCCTTGCCTCGTCCCTTTTTAAAGACATGGTCATGCAAAAGAT
TGCACGGGAAAGGAAGGCGGGAGGGTCGCCATTGGAGGGCGGCGCGTTGA
ATGCAGCCGGGGCGACGGTGTCTTCCGACCCGGATCCCACCCCTCAACAT
TGGCAGCGTGTCTACAATTTGATGCTGCGGGCCTGTGCAAACATTGCAGA
CGGTGTGTGCGCTTTGGAAGTATGGGATCACATGCAGGAGACCGGTTTTT
CGGCGGGAGAAGAGACGATGAGTTTCGTGGTGATGGCCTTGGCCAAGGCT
CGGATGCGGTTGGAAGCCCAAGCTCGGTTCGAGGAGGCGGTCGAGAAGGG
GTTGGTTCTATCCCCTGCGGCAAAGAGTTGTCTGATCTCCTGCCATGCCC
GGGCGTTGGACGGGGAGGCCGCGGCCCGCGTCCTGGAGGTGACGGTGGAG
GACGGGCGGTCCCCGGAGAATCCGGGGGTGGTGTCGGGGAATATGGTCAC
CAAGGTCTTGGAAGTCGGCATCGAGACAGGCAACGTTAAGGTCCTGCGGC
AAGGATTGAACGCCTTGACGATGCCTGTGGATCGGGGGATGGGGCTGCAG
ATCTTGAACATGGCTGCCAAGCGGGGCGATGGGCAACTGGCGATGGACGT
GTTCTATGCGTTGGAGGGGTGGGGGTTTTCCCCGACGGCCTCGGTGTTCA
ACGCCGTGATACAAGCCTTGGGTATTTCCAAGAACGACGTAGCCATGCTC
AAGGCTTTGAATGAAATGTGCGCGTTGGGCTTCACGCCTTCGGAGGGCAC
CCTTCACTTGGTGGCCCGACAGCTCTCCAAGTCCGTGGCCAGATTGGATG
AGGCATACAATAACCTGGTCGCGCTCCAGAAGGCCTACCAGGACCATGTG
CGGCAAGAGGCTGAGGGACGGCAGGAACAGCAAGCGGTGGATGGAAAGGA
CGGGGAGGGGGCGGACCCCGCCTTCGTGCCCAATGCTCCTTTGCCTGTGA
GTGGGTCTGCTGTCTATTTGATTGTCTTGGGTTGTGCGTATGCAAACCAG
TTGGACCGTGCGTTCGCCACATTCGAGGACTACCAACCTGTCTTTGGGTT
GGCCTACGACACCAATGCCTCGAATGCCCTGCTGCTCGCGTGCCTCCGGT
CCCGGTCCTTGCAAGTTGGGGCGGCTATCTCAGTGATGAACGAAATGGAT
CGCCTAGGTATCGCTCCCAACGACGAGACGTGCCATTTAATGGTTCGCAT
TCTGGCCCAAGCCAAGGAGGTGGATGTGAAGAGGATGGAGAGCGTTCTGT
CGCACATGGACGAGAAAGGCGTGGTGCTCCGGCCCGCCACCCAGCGATTG
TTGATCCTATGGTATGCGTTGCTTGGAGAGCATGATCGAGCGCAGGAGCT
CTTGAGCGGGATGCACGCACAGGGTTGCTATGTACCTTCATATTTTGAAG
AGAGGTTAAAACAAATTCGTCTCAATGGGGACCGGTTGTGAAAGTATCGG
GTCTTCATGCTGGATTTAAATGTGAAAGATTGCAACAACGATAAGAAGAG
TGAGCCCTGGCTAAATGCACTCGTCTTTAAAAAGCAAAATGAAAATAACA
CCTAGTCGTACGGGGAGTGTTTGTTATAACCT back to topCoding sequence (CDS) from alignment at CM002462.1:160598..163229- >rna3830 ID=rna3830|Name=rna3830|organism=Nannochloropsis gaditana|type=CDS|length=4140bp|location=Sequence derived from alignment at CM002462.1:160598..163229- (Nannochloropsis gaditana)
ATATTTATCCTCGATATTTAGCGGGAATATCTCTCCGGATGACTCAGCTG
CTCCCACTCTAGGCCAGAACACCAGTCGTGGTACACCCATGCAGGAAGAA
CTCCGTGCTTCGCCCTCGCCGTCCCCGACGGTTGCCGCGTCTCCCCCCCT
ACCATCCGCGCAAACCATATCCATAAATCCCTCCTCGAGCTCGGAAGAGC
AGGAGAAACTTTTCCAACAAGCAGCACTTGAGCTTGGACAGGCTTGGAAA
CAAGCGGCAGGGGTCAAACCAGGCATGGCACGTTTCGAACGCCTACTCCA
AGGCGAGGATCTAGATGCCATGGAGCGGTGCTGGAGGCAGACGGTGGGAA
AGGAAAGGCTGAATTTCTGGCATGTGCACACGTTTTTGGGACTGCTGTTG
GACGATCGATTCCTGAATGCACGTCCCCAGAGCGGGGCTGTTCCGGCAGA
ATTTGAGGGAGGGCAGAAGACAGGGGGTAAGCGCGGGGAGACCCTTCGTC
GGCGCTTACGCCTTGCCTCGTCCCTTTTTAAAGACATGGTCATGCAAAAG
ATTGCACGGGAAAGGAAGGCGGGAGGGTCGCCATTGGAGGGCGGCGCGTT
GAATGCAGCCGGGGCGACGGTGTCTTCCGACCCGGATCCCACCCCTCAAC
ATTGGCAGCGTGTCTACAATTTGATGCTGCGGGCCTGTGCAAACATTGCA
GACGGTGTGTGCGCTTTGGAAGTATGGGATCACATGCAGGAGACCGGTTT
TTCGGCGGGAGAAGAGACGATGAGTTTCGTGGTGATGGCCTTGGCCAAGG
CTCGGATGCGGTTGGAAGCCCAAGCTCGGTTCGAGGAGGCGGTCGAGAAG
GGGTTGGTTCTATCCCCTGCGGCAAAGAGTTGTCTGATCTCCTGCCATGC
CCGGGCGTTGGACGGGGAGGCCGCGGCCCGCGTCCTGGAGGTGACGGTGG
AGGACGGGCGGTCCCCGGAGAATCCGGGGGTGGTGTCGGGGAATATGGTC
ACCAAGGTCTTGGAAGTCGGCATCGAGACAGGCAACGTTAAGGTCCTGCG
GCAAGGATTGAACGCCTTGACGATGCCTGTGGATCGGGGGATGGGGCTGC
AGATCTTGAACATGGCTGCCAAGCGGGGCGATGGGCAACTGGCGATGGAC
GTGTTCTATGCGTTGGAGGGGTGGGGGTTTTCCCCGACGGCCTCGGTGTT
CAACGCCGTGATACAAGCCTTGGGTATTTCCAAGAACGACGTAGCCATGC
TCAAGGCTTTGAATGAAATGTGCGCGTTGGGCTTCACGCCTTCGGAGGGC
ACCCTTCACTTGGTGGCCCGACAGCTCTCCAAGTCCGTGGCCAGATTGGA
TGAGGCATACAATAACCTGGTCGCGCTCCAGAAGGCCTACCAGGACCATG
TGCGGCAAGAGGCTGAGGGACGGCAGGAACAGCAAGCGGTGGATGGAAAG
GACGGGGAGGGGGCGGACCCCGCCTTCGTGCCCAATGCTCCTTTGCCTGT
GAGTGGGTCTGCTGTCTATTTGATTGTCTTGGGTTGTGCGTATGCAAACC
AGTTGGACCGTGCGTTCGCCACATTCGAGGACTACCAACCTGTCTTTGGG
TTGGCCTACGACACCAATGCCTCGAATGCCCTGCTGCTCGCGTGCCTCCG
GTCCCGGTCCTTGCAAGTTGGGGCGGCTATCTCAGTGATGAACGAAATGG
ATCGCCTAGGTATCGCTCCCAACGACGAGACGTGCCATTTAATGGTTCGC
ATTCTGGCCCAAGCCAAGGAGGTGGATGTGAAGAGGATGGAGAGCGTTCT
GTCGCACATGGACGAGAAAGGCGTGGTGCTCCGGCCCGCCACCCAGCGAT
TGTTGATCCTATGGTATGCGTTGCTTGGAGAGCATGATCGAGCGCAGGAG
CTCTTGAGCGGGATGCACGCACAGGGTTGCTATGTACCTTCATATTTTGA
AGAGAGGTTAAAACAAATTCGTCTCAATGGGGACCGGTTGTGAATGCAGC
GGTTTATCGCGTTGCGAAAATTGGCAGCGGGGGGGTTCCTTACACCTGTC
TTGTCGCCGCATCATGGAAGATATTTATCCTCGATATTTAGCGGGAATAT
CTCTCCGGATGACTCAGCTGCTCCCACTCTAGGCCAGAACACCAGTCGTG
GTACACCCATGCAGGAAGAACTCCGTGCTTCGCCCTCGCCGTCCCCGACG
GTTGCCGCGTCTCCCCCCCTACCATCCGCGCAAACCATATCCATAAATCC
CTCCTCGAGCTCGGAAGAGCAGGAGAAACTTTTCCAACAAGCAGCACTTG
AGCTTGGACAGGCTTGGAAACAAGCGGCAGGGGTCAAACCAGGCATGGCA
CGTTTCGAACGCCTACTCCAAGGCGAGGATCTAGATGCCATGGAGCGGTG
CTGGAGGCAGACGGTGGGAAAGGAAAGGCTGAATTTCTGGCATGTGCACA
CGTTTTTGGGACTGCTGTTGGACGATCGATTCCTGAATGCACGTCCCCAG
AGCGGGGCTGTTCCGGCAGAATTTGAGGGAGGGCAGAAGACAGGGGGTAA
GCGCGGGGAGACCCTTCGTCGGCGCTTACGCCTTGCCTCGTCCCTTTTTA
AAGACATGGTCATGCAAAAGATTGCACGGGAAAGGAAGGCGGGAGGGTCG
CCATTGGAGGGCGGCGCGTTGAATGCAGCCGGGGCGACGGTGTCTTCCGA
CCCGGATCCCACCCCTCAACATTGGCAGCGTGTCTACAATTTGATGCTGC
GGGCCTGTGCAAACATTGCAGACGGTGTGTGCGCTTTGGAAGTATGGGAT
CACATGCAGGAGACCGGTTTTTCGGCGGGAGAAGAGACGATGAGTTTCGT
GGTGATGGCCTTGGCCAAGGCTCGGATGCGGTTGGAAGCCCAAGCTCGGT
TCGAGGAGGCGGTCGAGAAGGGGTTGGTTCTATCCCCTGCGGCAAAGAGT
TGTCTGATCTCCTGCCATGCCCGGGCGTTGGACGGGGAGGCCGCGGCCCG
CGTCCTGGAGGTGACGGTGGAGGACGGGCGGTCCCCGGAGAATCCGGGGG
TGGTGTCGGGGAATATGGTCACCAAGGTCTTGGAAGTCGGCATCGAGACA
GGCAACGTTAAGGTCCTGCGGCAAGGATTGAACGCCTTGACGATGCCTGT
GGATCGGGGGATGGGGCTGCAGATCTTGAACATGGCTGCCAAGCGGGGCG
ATGGGCAACTGGCGATGGACGTGTTCTATGCGTTGGAGGGGTGGGGGTTT
TCCCCGACGGCCTCGGTGTTCAACGCCGTGATACAAGCCTTGGGTATTTC
CAAGAACGACGTAGCCATGCTCAAGGCTTTGAATGAAATGTGCGCGTTGG
GCTTCACGCCTTCGGAGGGCACCCTTCACTTGGTGGCCCGACAGCTCTCC
AAGTCCGTGGCCAGATTGGATGAGGCATACAATAACCTGGTCGCGCTCCA
GAAGGCCTACCAGGACCATGTGCGGCAAGAGGCTGAGGGACGGCAGGAAC
AGCAAGCGGTGGATGGAAAGGACGGGGAGGGGGCGGACCCCGCCTTCGTG
CCCAATGCTCCTTTGCCTGTGAGTGGGTCTGCTGTCTATTTGATTGTCTT
GGGTTGTGCGTATGCAAACCAGTTGGACCGTGCGTTCGCCACATTCGAGG
ACTACCAACCTGTCTTTGGGTTGGCCTACGACACCAATGCCTCGAATGCC
CTGCTGCTCGCGTGCCTCCGGTCCCGGTCCTTGCAAGTTGGGGCGGCTAT
CTCAGTGATGAACGAAATGGATCGCCTAGGTATCGCTCCCAACGACGAGA
CGTGCCATTTAATGGTTCGCATTCTGGCCCAAGCCAAGGAGGTGGATGTG
AAGAGGATGGAGAGCGTTCTGTCGCACATGGACGAGAAAGGCGTGGTGCT
CCGGCCCGCCACCCAGCGATTGTTGATCCTATGGTATGCGTTGCTTGGAG
AGCATGATCGAGCGCAGGAGCTCTTGAGCGGGATGCACGCACAGGGTTGC
TATGTACCTTCATATTTTGAAGAGAGGTTAAAACAAATTCGTCTCAATGG
GGACCGGTTGTGAATGCAGCGGTTTATCGCGTTGCGAAAATTGGCAGCGG
GGGGGTTCCTTACACCTGTCTTGTCGCCGCATCATGGAAG back to top
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