rna3827, rna3827 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3827
Unique Name	rna3827
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	378
Alignment location	CM002462.1:155617..157578 -

Link to JBrowse

Properties


Property Name	Value
Product	protein scaf8
Orig transcript id	gnl\|cribi\|Naga_100097g12.3739.mrna
Orig protein id	gnl\|cribi\|Naga_100097g12.3739
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:155617..157578 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100097g12	gene3683	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3827	rna3827-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26848.1	cds3818	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:155617..157578-
coding sequence from alignment at CM002462.1:155617..157578-

mRNA sequence

>rna3827 ID=rna3827|Name=rna3827|organism=Nannochloropsis gaditana|type=mRNA|length=378bp
ATGATCAACGCCTTTCTTCGTGATAGTGTCGTCTACCAGTGGCACAGGAG
CCTGTCACTGAGCGTGGGAGGGACCTTCATAAGTAAGCCATTTACACGCC
ACATCGGTCTATTGCCTGTAGAAGACCATAACTACGATGCCGTTCCGTGT
CAACTTTCCCTCTTTTTTTATGGCCCTGATCCGTGCGCCGACCCAAGCCA
CGCCCTATCAAGCCGTGTTCCGCGTCTCGCCTTCCATGAACAAGCCAGAA
ATACGGGAATATCTGACCAAAATCTACGGTTTGAACGTCCGCAAGGTGAT
GACTGCCAACATGGCCGGACGGCGCAAAAGGATCATGGGCTCCCGGCGGA
TACTCCGATACAAACGCCCGGACTTTAA

protein sequence of rna3827

>rna3827-protein ID=rna3827-protein|Name=rna3827|organism=Nannochloropsis gaditana|type=polypeptide|length=458bp
MRHFFSLSPVRGQKNHLDLNNTYACHLSSSHRSKQRKVHFSLEPHAVLPA
SSRASHAVPFVFLSTLFLRLQNRTSIIMEVDDEELRPLKDLLDDLCASPL
PITKEKISKVAECALRYVQKYKKVVHMIERYAKHYAGVRYRSAVICVIDS
LCTKAHRAHKEKDVFIPRFRLRLLETLQGVTTLEGRSERALMDRIFVEWR
KRGWFDVPPLATLAGEKEGKPTRGTQNPQGQEGPRKRGKKRTGSTEVLES
TTPPYDPPRTSRGVPGRLTEDGMTSPQNEEGLGSPTPLSPPTSPSPVAQT
AASPPSPASDPSSGSAAKSVLKKFLAGFCAKEGGKVPAWPQTFLASLPSS
VPPSLHIPPLSTSSFFPVVPVPRAVWLGEGREGEEEGGRASSGYVVSAVP
GLYVTLSRTAREEGGKGGGKERGEEGGGEVEGGVGGDGQAVTKKAVGRQW
GRPPATLA

mRNA from alignment at CM002462.1:155617..157578-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3827 ID=rna3827|Name=rna3827|organism=Nannochloropsis gaditana|type=mRNA|length=1962bp|location=Sequence derived from alignment at CM002462.1:155617..157578- (Nannochloropsis gaditana)
ATGCGGCACTTCTTCTCTTTGAGCCCAGTGCGTGGCCAAAAGAATCATCT
TGATCTCAACAACACCTACGCATGTCATCTTTCCTCCTCCCACCGGTCAA
AGCAGCGCAAGGTGCATTTTTCTTTGGAGCCACACGCCGTTCTTCCTGCC
TCGTCGAGGGCTTCTCACGCCGTTCCCTTCGTCTTCTTGTCCACCCTCTT
CCTACGCTTACAAAACCGCACATCCATCATCATGGAAGTAGACGATGAAG
AATTGCGGCCCTTGAAGGACCTGCTGGATGATTTATGCGCCTCTCCTTTG
CCTATCACCAAAGAGAAAATCTCTAAGGTGGCTGAATGCGCGCTGCGATA
CGTGCAAAAGTATAAAAAGGTGGTGCACATGATCGAACGGTATGCCAAGC
ATTACGCCGGAGTCCGCTATCGTTCGGCCGTCATTTGCGTGATCGACTCC
CTTTGCACGAAAGCGCACCGGGCGCACAAAGAAAAAGATGTCTTCATACC
CCGGTTTCGCCTCCGCCTGCTGGAGACATTGCAAGGCGTGACGACCTTGG
AAGGTCGTTCGGAGCGGGCTTTGATGGACCGAATTTTCGTGGAGTGGCGA
AAACGAGGATGGTTCGACGTCCCACCCTTGGCAACGCTGGCGGGCGAGAA
GGAGGGAAAACCGACGCGCGGCACCCAAAACCCCCAAGGACAGGAAGGGC
CCCGCAAAAGAGGGAAAAAGCGAACCGGAAGCACGGAAGTGCTCGAGTCC
ACCACCCCACCGTACGACCCGCCCAGGACAAGCCGCGGGGTGCCGGGGAG
GCTGACAGAGGACGGCATGACCTCCCCCCAAAATGAGGAAGGACTTGGTT
CTCCCACCCCCCTGTCCCCTCCTACCTCCCCCTCCCCCGTCGCCCAGACT
GCGGCCTCGGTACCTCCTTTCCCTCCTCCTCAAGCCCTGCCTTTTCCGAG
CCTCCCCGCCCACGATCCACGCAAACGCGCCCGCACGGCCCCTCCCCCCC
TCCCTCCTCCACCTCCTCCACCTCCTCCGCCTCCTCCACCCCCTCCTCCT
TCGCTTCCTGCTCCTCCCCCCCTCCGAACGTCACGGCCATTAAGAGCGCG
CCATCGGACCCTCGGAACGATCGAAGCCGGCGGATCCCCGGGGGAAAGGG
GCCAAGGGCGGGAAGGAGGGAGGGGAGAGGGAGGGAGGGAAAGCGAGGCG
ACCTCTTCCCTACCTCCCGCGGCACCCGCCGCAGGGAAAGGCCTGCGGAG
CCTCCTTCTCGTGGAAGGGGAGGAGGAGGAAGAAGAAGACGAAGCCCTCC
CCCTGGGAAAAGTGTCCGCCTTAAGAGAAGCAGGGAGGGAAAACCCCCCG
GCCTCCCGCCCTGCCCCCCTTCCTCCCCCTCCTCCTCCCCCTCCTCCTCC
CCCTCCTCTTCCTCCGCGCTCTGCCCTTGCCCTTCCTCCCCTCCCCCCTC
CCTTCCTGACTGTCGTCCAATCCAGGTCTCCTCCTTCCTGCCAGCCTCCC
TCCCCGGCATCAGACCCCAGCAGCGGTAGCGCCGCCAAGTCGGTACTCAA
GAAATTTCTGGCGGGTTTTTGCGCGAAAGAAGGAGGGAAGGTGCCTGCGT
GGCCACAGACTTTTTTGGCCTCCCTCCCGTCCTCGGTGCCACCCTCCTTG
CACATCCCTCCCCTCTCCACGTCGTCCTTCTTCCCCGTCGTGCCCGTGCC
ACGCGCTGTCTGGTTGGGAGAAGGAAGGGAGGGAGAGGAGGAGGGCGGGC
GGGCAAGCTCCGGGTATGTTGTGAGTGCGGTGCCGGGCCTGTACGTGACC
CTTTCCCGGACGGCCAGGGAGGAAGGAGGAAAGGGAGGAGGGAAGGAAAG
AGGGGAAGAAGGAGGAGGAGAAGTAGAGGGAGGCGTGGGAGGAGACGGAC
AGGCTGTGACGAAGAAAGCGGTTGGTCGGCAGTGGGGAAGGCCCCCGGCA
ACCTTGGCCTGA

Coding sequence (CDS) from alignment at CM002462.1:155617..157578-

>rna3827 ID=rna3827|Name=rna3827|organism=Nannochloropsis gaditana|type=CDS|length=2754bp|location=Sequence derived from alignment at CM002462.1:155617..157578- (Nannochloropsis gaditana)
CCTCCCTCCCCGGCATCAGACCCCAGCAGCGGTAGCGCCGCCAAGTCGGT
ACTCAAGAAATTTCTGGCGGGTTTTTGCGCGAAAGAAGGAGGGAAGGTGC
CTGCGTGGCCACAGACTTTTTTGGCCTCCCTCCCGTCCTCGGTGCCACCC
TCCTTGCACATCCCTCCCCTCTCCACGTCGTCCTTCTTCCCCGTCGTGCC
CGTGCCACGCGCTGTCTGGTTGGGAGAAGGAAGGGAGGGAGAGGAGGAGG
GCGGGCGGGCAAGCTCCGGGTATGTTGTGAGTGCGGTGCCGGGCCTGTAC
GTGACCCTTTCCCGGACGGCCAGGGAGGAAGGAGGAAAGGGAGGAGGGAA
GGAAAGAGGGGAAGAAGGAGGAGGAGAAGTAGAGGGAGGCGTGGGAGGAG
ACGGACAGGCTGTGACGAAGAAAGCGGTTGGTCGGCAGTGGGGAAGGCCC
CCGGCAACCTTGGCCTGAATGCGGCACTTCTTCTCTTTGAGCCCAGTGCG
TGGCCAAAAGAATCATCTTGATCTCAACAACACCTACGCATGTCATCTTT
CCTCCTCCCACCGGTCAAAGCAGCGCAAGGTGCATTTTTCTTTGGAGCCA
CACGCCGTTCTTCCTGCCTCGTCGAGGGCTTCTCACGCCGTTCCCTTCGT
CTTCTTGTCCACCCTCTTCCTACGCTTACAAAACCGCACATCCATCATCA
TGGAAGTAGACGATGAAGAATTGCGGCCCTTGAAGGACCTGCTGGATGAT
TTATGCGCCTCTCCTTTGCCTATCACCAAAGAGAAAATCTCTAAGGTGGC
TGAATGCGCGCTGCGATACGTGCAAAAGTATAAAAAGGTGGTGCACATGA
TCGAACGGTATGCCAAGCATTACGCCGGAGTCCGCTATCGTTCGGCCGTC
ATTTGCGTGATCGACTCCCTTTGCACGAAAGCGCACCGGGCGCACAAAGA
AAAAGATGTCTTCATACCCCGGTTTCGCCTCCGCCTGCTGGAGACATTGC
AAGGCGTGACGACCTTGGAAGGTCGTTCGGAGCGGGCTTTGATGGACCGA
ATTTTCGTGGAGTGGCGAAAACGAGGATGGTTCGACGTCCCACCCTTGGC
AACGCTGGCGGGCGAGAAGGAGGGAAAACCGACGCGCGGCACCCAAAACC
CCCAAGGACAGGAAGGGCCCCGCAAAAGAGGGAAAAAGCGAACCGGAAGC
ACGGAAGTGCTCGAGTCCACCACCCCACCGTACGACCCGCCCAGGACAAG
CCGCGGGGTGCCGGGGAGGCTGACAGAGGACGGCATGACCTCCCCCCAAA
ATGAGGAAGGACTTGGTTCTCCCACCCCCCTGTCCCCTCCTACCTCCCCC
TCCCCCGTCGCCCAGACTGCGGCCTCGCCTCCCTCCCCGGCATCAGACCC
CAGCAGCGGTAGCGCCGCCAAGTCGGTACTCAAGAAATTTCTGGCGGGTT
TTTGCGCGAAAGAAGGAGGGAAGGTGCCTGCGTGGCCACAGACTTTTTTG
GCCTCCCTCCCGTCCTCGGTGCCACCCTCCTTGCACATCCCTCCCCTCTC
CACGTCGTCCTTCTTCCCCGTCGTGCCCGTGCCACGCGCTGTCTGGTTGG
GAGAAGGAAGGGAGGGAGAGGAGGAGGGCGGGCGGGCAAGCTCCGGGTAT
GTTGTGAGTGCGGTGCCGGGCCTGTACGTGACCCTTTCCCGGACGGCCAG
GGAGGAAGGAGGAAAGGGAGGAGGGAAGGAAAGAGGGGAAGAAGGAGGAG
GAGAAGTAGAGGGAGGCGTGGGAGGAGACGGACAGGCTGTGACGAAGAAA
GCGGTTGGTCGGCAGTGGGGAAGGCCCCCGGCAACCTTGGCCTGAATGCG
GCACTTCTTCTCTTTGAGCCCAGTGCGTGGCCAAAAGAATCATCTTGATC
TCAACAACACCTACGCATGTCATCTTTCCTCCTCCCACCGGTCAAAGCAG
CGCAAGGTGCATTTTTCTTTGGAGCCACACGCCGTTCTTCCTGCCTCGTC
GAGGGCTTCTCACGCCGTTCCCTTCGTCTTCTTGTCCACCCTCTTCCTAC
GCTTACAAAACCGCACATCCATCATCATGGAAGTAGACGATGAAGAATTG
CGGCCCTTGAAGGACCTGCTGGATGATTTATGCGCCTCTCCTTTGCCTAT
CACCAAAGAGAAAATCTCTAAGGTGGCTGAATGCGCGCTGCGATACGTGC
AAAAGTATAAAAAGGTGGTGCACATGATCGAACGGTATGCCAAGCATTAC
GCCGGAGTCCGCTATCGTTCGGCCGTCATTTGCGTGATCGACTCCCTTTG
CACGAAAGCGCACCGGGCGCACAAAGAAAAAGATGTCTTCATACCCCGGT
TTCGCCTCCGCCTGCTGGAGACATTGCAAGGCGTGACGACCTTGGAAGGT
CGTTCGGAGCGGGCTTTGATGGACCGAATTTTCGTGGAGTGGCGAAAACG
AGGATGGTTCGACGTCCCACCCTTGGCAACGCTGGCGGGCGAGAAGGAGG
GAAAACCGACGCGCGGCACCCAAAACCCCCAAGGACAGGAAGGGCCCCGC
AAAAGAGGGAAAAAGCGAACCGGAAGCACGGAAGTGCTCGAGTCCACCAC
CCCACCGTACGACCCGCCCAGGACAAGCCGCGGGGTGCCGGGGAGGCTGA
CAGAGGACGGCATGACCTCCCCCCAAAATGAGGAAGGACTTGGTTCTCCC
ACCCCCCTGTCCCCTCCTACCTCCCCCTCCCCCGTCGCCCAGACTGCGGC
CTCG

Synonyms

Publications