EWM26848.1, cds3818 (CDS) Nannochloropsis gaditana

BLAST of EWM26848.1 vs. NCBI_GenBank
Match: gi|585108943|gb|EWM26848.1| (protein scaf8 [Nannochloropsis gaditana])

HSP 1 Score: 928.317 bits (2398), Expect = 0.000e+0
Identity = 458/458 (100.00%), Postives = 458/458 (100.00%), Query Frame = 0

Query:    1 MRHFFSLSPVRGQKNHLDLNNTYACHLSSSHRSKQRKVHFSLEPHAVLPASSRASHAVPFVFLSTLFLRLQNRTSIIMEVDDEELRPLKDLLDDLCASPLPITKEKISKVAECALRYVQKYKKVVHMIERYAKHYAGVRYRSAVICVIDSLCTKAHRAHKEKDVFIPRFRLRLLETLQGVTTLEGRSERALMDRIFVEWRKRGWFDVPPLATLAGEKEGKPTRGTQNPQGQEGPRKRGKKRTGSTEVLESTTPPYDPPRTSRGVPGRLTEDGMTSPQNEEGLGSPTPLSPPTSPSPVAQTAASPPSPASDPSSGSAAKSVLKKFLAGFCAKEGGKVPAWPQTFLASLPSSVPPSLHIPPLSTSSFFPVVPVPRAVWLGEGREGEEEGGRASSGYVVSAVPGLYVTLSRTAREEGGKGGGKERGEEGGGEVEGGVGGDGQAVTKKAVGRQWGRPPATLA 458
            MRHFFSLSPVRGQKNHLDLNNTYACHLSSSHRSKQRKVHFSLEPHAVLPASSRASHAVPFVFLSTLFLRLQNRTSIIMEVDDEELRPLKDLLDDLCASPLPITKEKISKVAECALRYVQKYKKVVHMIERYAKHYAGVRYRSAVICVIDSLCTKAHRAHKEKDVFIPRFRLRLLETLQGVTTLEGRSERALMDRIFVEWRKRGWFDVPPLATLAGEKEGKPTRGTQNPQGQEGPRKRGKKRTGSTEVLESTTPPYDPPRTSRGVPGRLTEDGMTSPQNEEGLGSPTPLSPPTSPSPVAQTAASPPSPASDPSSGSAAKSVLKKFLAGFCAKEGGKVPAWPQTFLASLPSSVPPSLHIPPLSTSSFFPVVPVPRAVWLGEGREGEEEGGRASSGYVVSAVPGLYVTLSRTAREEGGKGGGKERGEEGGGEVEGGVGGDGQAVTKKAVGRQWGRPPATLA
Sbjct:    1 MRHFFSLSPVRGQKNHLDLNNTYACHLSSSHRSKQRKVHFSLEPHAVLPASSRASHAVPFVFLSTLFLRLQNRTSIIMEVDDEELRPLKDLLDDLCASPLPITKEKISKVAECALRYVQKYKKVVHMIERYAKHYAGVRYRSAVICVIDSLCTKAHRAHKEKDVFIPRFRLRLLETLQGVTTLEGRSERALMDRIFVEWRKRGWFDVPPLATLAGEKEGKPTRGTQNPQGQEGPRKRGKKRTGSTEVLESTTPPYDPPRTSRGVPGRLTEDGMTSPQNEEGLGSPTPLSPPTSPSPVAQTAASPPSPASDPSSGSAAKSVLKKFLAGFCAKEGGKVPAWPQTFLASLPSSVPPSLHIPPLSTSSFFPVVPVPRAVWLGEGREGEEEGGRASSGYVVSAVPGLYVTLSRTAREEGGKGGGKERGEEGGGEVEGGVGGDGQAVTKKAVGRQWGRPPATLA 458          

BLAST of EWM26848.1 vs. NCBI_GenBank
Match: gi|553183993|ref|XP_005854008.1| (b chain of rna processing factor scaf8, partial [Nannochloropsis gaditana CCMP526] >gi|553185376|ref|XP_005854243.1| b chain of rna processing factor scaf8, partial [Nannochloropsis gaditana CCMP526] >gi|422294816|gb|EKU22116.1| b chain of rna processing factor scaf8, partial [Nannochloropsis gaditana CCMP526] >gi|422295052|gb|EKU22351.1| b chain of rna processing factor scaf8, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 459.144 bits (1180), Expect = 1.183e-159
Identity = 222/224 (99.11%), Postives = 222/224 (99.11%), Query Frame = 0

Query:   57 AVPFVFLSTLFLRLQNRTSIIMEVDDEELRPLKDLLDDLCASPLPITKEKISKVAECALRYVQKYKKVVHMIERYAKHYAGVRYRSAVICVIDSLCTKAHRAHKEKDVFIPRFRLRLLETLQGVTTLEGRSERALMDRIFVEWRKRGWFDVPPLATLAGEKEGKPTRGTQNPQGQEGPRKRGKKRTGSTEVLESTTPPYDPPRTSRGVPGRLTEDGMTSPQNEE 280
            AVPFVFLSTLFLRLQNR SIIMEVDDEELRPLKDLLDDLCAS LPITKEKISKVAECALRYVQKYKKVVHMIERYAKHYAGVRYRSAVICVIDSLCTKAHRAHKEKDVFIPRFRLRLLETLQGVTTLEGRSERALMDRIFVEWRKRGWFDVPPLATLAGEKEGKPTRGTQNPQGQEGPRKRGKKRTGSTEVLESTTPPYDPPRTSRGVPGRLTEDGMTSPQNEE
Sbjct:    1 AVPFVFLSTLFLRLQNRASIIMEVDDEELRPLKDLLDDLCASSLPITKEKISKVAECALRYVQKYKKVVHMIERYAKHYAGVRYRSAVICVIDSLCTKAHRAHKEKDVFIPRFRLRLLETLQGVTTLEGRSERALMDRIFVEWRKRGWFDVPPLATLAGEKEGKPTRGTQNPQGQEGPRKRGKKRTGSTEVLESTTPPYDPPRTSRGVPGRLTEDGMTSPQNEE 224          

BLAST of EWM26848.1 vs. NCBI_GenBank
Match: gi|299471863|emb|CBN77033.1| (Chain A, Snapshots Of The Rna Processing Factor Scaf8 Bound To Different Phosphorylated Forms Of The Carboxy-Terminal Domain Of Rna-Polymerase Ii pdb|3D9I|B Chain B, Snapshots Of The Rna Processing Fa (Partial), partial [Ectocarpus siliculosus])

HSP 1 Score: 71.2478 bits (173), Expect = 3.646e-10
Identity = 41/118 (34.75%), Postives = 64/118 (54.24%), Query Frame = 0

Query:   88 LKDLLDDLCASPLPITKEKISKVAECALRYVQKYKKVVHMIERYAKHYAGVRYRSAVICVIDSLCTKAHRAHKEKDVFIPRFRLRLLETLQGVTTLEGRSERALMDRIFVEWRKRGWF 205
            +   L  L  S  PI+  ++   A  AL  V++YK+VVH IERY +  A  ++R     VIDS+C +A      KDVF PRF  R+ ET++ +  +    ++  + R+  EW ++G F
Sbjct:   12 MHKALKVLATSSRPISASRVKTAAARALDNVKEYKRVVHAIERYIRK-AQPQHRIGGCFVIDSVCRQAQSKWGHKDVFTPRFAQRMSETVENLRNVPD-GDKPPVFRVIREWHEKGMF 127          

BLAST of EWM26848.1 vs. NCBI_GenBank
Match: gi|926621953|ref|XP_013776339.1| (PREDICTED: protein SCAF8-like [Limulus polyphemus])

HSP 1 Score: 62.7734 bits (151), Expect = 2.205e-7
Identity = 46/171 (26.90%), Postives = 83/171 (48.54%), Query Frame = 0

Query:   83 EELRPLKDLLDDLCASPLPITKEKISKVAECALRYVQKYKKVVHMIERYAKHYAGVRYRSAVICVIDSLCTKAHRAHKEKDVFIPRFRLRLLETLQGVTTLEGRSERALMDRIFVEWRKRGWFD---VPPLATLAGEKEGKPTRGTQNPQGQEGPRKRGKKRTGSTEVLES 250
            E +R   + L  L  S  P++K K+++V + A++ ++ YK +V  +E++ +      Y+   + VIDS+  ++     +KDVF PRF   +  T Q +       +R+ + R+   W+K   F    + PL  LA   +   T   Q+P   EG  +       ST+++ES
Sbjct:    2 EVVRAFNNELSSLYESKPPVSKAKMTQVTKAAIKGIKFYKHIVQSVEKFIQK-CRPEYKVPGLYVIDSIVRQSRHQFGDKDVFAPRFSKNITTTFQNLFKCPDE-DRSKVVRVLNLWQKNNVFQSEIIQPLLDLA---DPNNTNSNQSPVANEGIER------SSTKLVES 161          

BLAST of EWM26848.1 vs. NCBI_GenBank
Match: gi|768451527|ref|XP_011567962.1| (PREDICTED: protein SCAF8-like, partial [Plutella xylostella])

HSP 1 Score: 61.6178 bits (148), Expect = 3.735e-7
Identity = 38/139 (27.34%), Postives = 71/139 (51.08%), Query Frame = 0

Query:   80 VDDEELRPLKDLLDDLCASPLPITKEKISKVAECALRYVQKYKKVVHMIERYAKHYAGVRYRSAVICVIDSLCTKA-HRAHKEKDVFIPRFRLRLLETLQGVTTLEGRSERALMDRIFVEWRKRGWFD---VPPLATLA 214
            +D  E++     L  L  +  PI+K K+S +   A++ ++ YK VVH +E++ +      Y+   + VIDS+  ++ H+  ++KDVF PRF   + +T   +       +R ++ R+   W+K   F    + PL  +A
Sbjct:    1 MDMSEVKAFNAELSGLYDNKPPISKAKMSAITRGAIKAIKFYKHVVHSVEKFIQK-CKPEYKVPGLYVIDSIVRQSRHQFGQDKDVFAPRFAKNMQQTFANLFRCPPEDKRNII-RVLNLWQKNNVFGPDVIQPLMDMA 137          

BLAST of EWM26848.1 vs. NCBI_GenBank
Match: gi|190016422|pdb|3D9I|A (Chain A, Snapshots Of The Rna Processing Factor Scaf8 Bound To Different Phosphorylated Forms Of The Carboxy-Terminal Domain Of Rna-Polymerase Ii >gi|190016423|pdb|3D9I|B Chain B, Snapshots Of The Rna Processing Factor Scaf8 Bound To Different Phosphorylated Forms Of The Carboxy-Terminal Domain Of Rna-Polymerase Ii)

HSP 1 Score: 58.5362 bits (140), Expect = 8.511e-7
Identity = 35/122 (28.69%), Postives = 67/122 (54.92%), Query Frame = 0

Query:  101 PITKEKISKVAECALRYVQKYKKVVHMIERYAKHYAGVRYRSAVICVIDSLCTKA-HRAHKEKDVFIPRFRLRLLETLQGVTTLEGRSERALMDRIFVEWRKRGWFD---VPPLATLAGEKE 218
            PI+K K++++ + A++ ++ YK VV  +E++ +      Y+   + VIDS+  ++ H+  +EKDVF PRF   ++ T Q +    G  +++ + R+   W+K   F    + PL  +A   E
Sbjct:   20 PISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQK-CKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPG-DDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAALE 139          

BLAST of EWM26848.1 vs. NCBI_GenBank
Match: gi|190016424|pdb|3D9J|A (Chain A, Snapshots Of The Rna Processing Factor Scaf8 Bound To Different Phosphorylated Forms Of The Carboxy-Terminal Domain Of Rna-Polymerase Ii >gi|190016425|pdb|3D9J|B Chain B, Snapshots Of The Rna Processing Factor Scaf8 Bound To Different Phosphorylated Forms Of The Carboxy-Terminal Domain Of Rna-Polymerase Ii >gi|190016426|pdb|3D9K|A Chain A, Snapshots Of The Rna Processing Factor Scaf8 Bound To Different Phosphorylated Forms Of The Carboxy-Terminal Domain Of Rna-Polymerase Ii >gi|190016427|pdb|3D9K|B Chain B, Snapshots Of The Rna Processing Factor Scaf8 Bound To Different Phosphorylated Forms Of The Carboxy-Terminal Domain Of Rna-Polymerase Ii >gi|190016430|pdb|3D9L|A Chain A, Snapshots Of The Rna Processing Factor Scaf8 Bound To Different Phosphorylated Forms Of The Carboxy-Terminal Domain Of Rna-Polymerase Ii >gi|190016431|pdb|3D9L|B Chain B, Snapshots Of The Rna Processing Factor Scaf8 Bound To Different Phosphorylated Forms Of The Carboxy-Terminal Domain Of Rna-Polymerase Ii >gi|190016434|pdb|3D9M|A Chain A, Snapshots Of The Rna Processing Factor Scaf8 Bound To Different Phosphorylated Forms Of The Carboxy-Terminal Domain Of Rna-Polymerase Ii >gi|190016435|pdb|3D9M|B Chain B, Snapshots Of The Rna Processing Factor Scaf8 Bound To Different Phosphorylated Forms Of The Carboxy-Terminal Domain Of Rna-Polymerase Ii >gi|190016438|pdb|3D9N|A Chain A, Snapshots Of The Rna Processing Factor Scaf8 Bound To Different Phosphorylated Forms Of The Carboxy-Terminal Domain Of Rna-Polymerase Ii >gi|190016439|pdb|3D9N|B Chain B, Snapshots Of The Rna Processing Factor Scaf8 Bound To Different Phosphorylated Forms Of The Carboxy-Terminal Domain Of Rna-Polymerase Ii)

HSP 1 Score: 58.5362 bits (140), Expect = 8.593e-7
Identity = 35/122 (28.69%), Postives = 67/122 (54.92%), Query Frame = 0

Query:  101 PITKEKISKVAECALRYVQKYKKVVHMIERYAKHYAGVRYRSAVICVIDSLCTKA-HRAHKEKDVFIPRFRLRLLETLQGVTTLEGRSERALMDRIFVEWRKRGWFD---VPPLATLAGEKE 218
            PI+K K++++ + A++ ++ YK VV  +E++ +      Y+   + VIDS+  ++ H+  +EKDVF PRF   ++ T Q +    G  +++ + R+   W+K   F    + PL  +A   E
Sbjct:   20 PISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQK-CKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPG-DDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAALE 139