rna3826, rna3826 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3826
Unique Name	rna3826
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3570
Alignment location	CM002462.1:153671..154776 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100097g11.3740.mrna
Orig protein id	gnl\|cribi\|Naga_100097g11.3740
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:153671..154776 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100097g11	gene3682	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3826	rna3826-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26849.1	cds3817	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:153671..154776+
coding sequence from alignment at CM002462.1:153671..154776+

mRNA sequence

>rna3826 ID=rna3826|Name=rna3826|organism=Nannochloropsis gaditana|type=mRNA|length=3570bp
CAATGAGCTCGGCCTCGCCTCTGTCTCCCCTCGCCCTTTCCCTTCCCCCT
ACTACTGTATATGCTCCCTCTTCAATGAAATCATTCCTGACCCCGCCGAT
CTAAGTTATGTTGTCTTTCCCTTCCACCTTCTCCTTTCATTTCAGGTGGA
GCATGGGTGCGCCGTCGTCCTTGCACGGGCTAGGGGCGGAGAATGACGAG
GAGGAAGAGGAAGGCTGGCATTTGCTCGGGGACGTTCCATTCCGAAAATG
GACCTGTTACCCAGCACCATTGCCATGCTTGGAAAGCCTCAACTTGGACG
AGCACATTGTCGTTGGGGCGGCGCATGGCGGTCCCTTCGCTGTGATGCGT
GACGCCAAAAATGGGGTTGTTCTCGGTTCGGAAAGGCCTTCTTCTTACCT
TCGGATTTACTCGTCAGCAGGGTTGCTATTGGGGCAGGCGCCTTGGGATC
TAGGGTCCAAAGTCGTGTGTATGGGATGGACGGAAAGCGAGGCTTTGGTC
GTCATCTCGGAAGCTGGCCACGTGCATTGGTACACTGTGCTTGGGGAGAG
CATGGACGCAGAGGCCCTGGAGAATTCGATTCGGAACGCACCGAATGAGA
AAGGACGCAAGTGTGCAACACAACTCTTCGTGGAAGGATCGCCCCGGCGT
GTGATTGAAGCACAGGTGTGGGCTTGCGGCTACGTGGCCCTGTCGGACGA
CTTCACATTGCATGTGTACGACGGCTCCATCTCCGACCCGGACTCCCGTT
TATATCGGCTTTCCGTCACGCTCCTCTCAGGACGGAGGTCGCCCACGAGC
ATGGCCGTGCTGACGCTCCCCGTTGGAGGAGAGGGTGTGGGAGGACAGGG
GGGCTCTAGGACGGGTGCGTTGCAGATCCTTTTGGGGACGTCGGACAATG
CCTTGGTCATGGTGGACGGTCAGAGCGGGCTCTGCGAGTTGCCTGCCTTA
CAAGCCTCCTTACCGGGGCCTGTGGTGAAAATGCGCGCCTCGCCCGACTC
CCGTTTTCTCGCCTGCTTTGCGGAAGGGCTGCTCACGGTCTATGCCACAG
GGAATTACAGCAAAGTCTTGGGTCCGTTCGATGCGGGGACCAGCCAGGTC
CCGGAGGCAATGGTGTGGTGTGGAAAAGACGCGCTGGCCATGTATTGGAG
GGGCATGGGGCTGGGCTTGGTCGGTCCTTACGGCGATTTTTACCATTTTC
CCTACGCGGGCGAGGCCATGGTCGTGGTCCAAGAGGTAGACAGTTGCCGA
TTGTGGACCGAGAGCGGCGGCTGTGAAATCCTCCAACGGGTCCCCACGGC
CACGGAGGCCATCCACCGCATTGGTTCCACCGAACCTGCCGCCATGCTCT
ACGACGCTGCCGAAGCCTTTCAACAGGGTGACCCCACCGCCGACGAAAAC
ATTCGCGCCATTTTGGCGTCGCCCCCCACCCCGGGGGGTACCGGCCCCGC
AAAGGGGGGAGGCGCGATCACATCAGGGATGCCCTCTTCTCCATCGCACT
TCTCCTCGCCTTCCTTGTCCAGCAGCAGCGGGGGTGGAGGGAACAAAAGT
CCTTTGCAGGGAGCCATCCACGCCTGCCTGCGCGCTGCCCTTGGCGCCTG
GGACGTGGGGAAACAGAAGAGGTATCTGCAGGCTGCGGCGTACGGGAAAG
GGTTTGAGGACGAGGAAGAACAGAAACAATGGCAGCCGTCATCCTCGATC
GATGCCGGGGACGGTGACATGGGGAGGAACAAAGCCGATGAATTCGTGGG
CGTGTGTAGGAAGCTACGGGTGCTGAATCACTTGCGACGTCCGGCCGTGG
GCATTCCCACCACGGCTTGGCAGCTGGCACAGGGAGGAAGGGAGGGTGGG
TGGGCGGCCCTGTTGAACCGCCTGCTTCTACGCCGCCTGTACTTTCTCGC
CTGGAAAGTCTGCGAGTATTTGCGCTTGGGTCCAGAGAAGGAGACGGTGT
TGGTGCGTTGGGCCTGTGCCTTAATCCTTTCCCCCCAGGCGGTGCACTTG
TCGGACCGCGAGCTTTGCGATCAAATCCGACGTCGATTCCAGGCAGCCTT
CGCCAAGGATCCCTCCTTTCCTCCCGCCCTTTCCTATGCACCGATCGCTC
GGACGGCCGACCAAGTCCGACGCCGGGGCTTGGCCACCCTCCTCCTCGAT
TACGACTCCTCCGCCTCCTCCCAGGTGGATCTGCTCCTGGAAATGGGTGA
ATTCAAGCTGGCCTTGGGAAAGGCCCTTCGAAGTAACAACCTCGACGTTG
CTTACCGAGCACTGTTCTTCTTGGAAGCCCACAAAGCCTCTCAAGAGGCC
TTTCTGGCCCTTCTAGCCTCCCACCCATCCTCCTTACGGCTCCTCCGGGT
ATACTACCGGAGTCGCCTGACGAAAGAAAGTCGGACGCCATGGTTCAATG
TCTCCCTGGCACGCGGAGATCTCATGGAGGCAGGTACCCTCGTTGCCTTT
CAGGCGTATGCCCAAGACAGCCACCCTCGGCGCATCGAGCTTCTGAGGGA
AGCTGCCCGTCTGTTTGGTCACCAGGGTAAGCAGCCGCTCTCTTCCATCT
CTTCCACCGCGTCATCCCCCGCCGGCACCAGCAGCTTCATGCCCTCCCTG
GCTATGCCCTCCGTCGCAGCAACGGTCGCTCCCAACACGACGTCGCCCTC
CTTCTTCCACCGCGTCACCGAAGAACAAGCCGACCTTTTGGAAGTTCAGG
CAGCCCTGGAGCGTCGGCTGGGGAAAAATGAGAACGTTTTCGTCGGTCTC
TCCGTGTCGGAGACCATCTACAACCTCATCGTCCTCGCCTCAGATGCCCT
CCCTTCCTCCCTTTCCCCCTCCCTCCCTCCCTCCATGCTCCTCGCCGAAG
CTGCACGTGTCGCCAAGAAATTCAAAGTTCCAGATAAACGGTTCTGGCAC
GTGAAAATCAACGCTTTGGCAGCTTCTGGCCAGTTCGAAAATTTGAAAGC
GTTCGCCAGCGAGAAGAAATCCCCCGTGGGCTATAAGCCTTTTGCGCAGG
CCTGTATCAAGCACAAGCAGCCCTCGGGGGTGGTGGAGACCTACATTGAT
CGCGTAGCCTCGCATGAGGATCGCTTCGATCTCTATGTCGAGGTGCGTTT
GTGGCAAAAGGCAGCAGAGGCGGCATTTCGTTTGAAAGATGTGTTAAGAC
TGAGGCAAGTGCAAGCGAATTGCATGATGCCAGGTTTGCAGCGTTCTATC
GACGACTTAATCGCAAAGTTGGGGTAGCCGACGGATGACGGAACGTTCAC
AATGCGACTTGTACAGTGAAAAGAAATAAAACAATGACGAAGGAGATACC
AAAGGGTGCGGAAAGAGGGCTTCGAGGAGTGACTCTGCGTTTTTGCGGGG
GCCAAAGCAGGTACTTAGGCGCAACCCTGGTCACGTCCGCTGTCCTCTAT
TGCTGTCGACCCGTCACTCATGTCTACGAATAGGCAGGTATTTATCACCA
CATTTCAGTATCTGTCGTTTCTTTCCAACTTGTGTACAATCACATCGCAT
GCTTGGCTTTGCTTCATCCCTCCGACTGACCTTTGCTAAAAAAAAATGTC
CGTCATCGTCAATATCCTCC

protein sequence of rna3826

>rna3826-protein ID=rna3826-protein|Name=rna3826|organism=Nannochloropsis gaditana|type=polypeptide|length=125bp
MINAFLRDSVVYQWHRSLSLSVGGTFISKPFTRHIGLLPVEDHNYDAVPC
QLSLFFYGPDPCADPSHALSSRVPRLAFHEQARNTGISDQNLRFERPQGD
DCQHGRTAQKDHGLPADTPIQTPGL

mRNA from alignment at CM002462.1:153671..154776+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3826 ID=rna3826|Name=rna3826|organism=Nannochloropsis gaditana|type=mRNA|length=1106bp|location=Sequence derived from alignment at CM002462.1:153671..154776+ (Nannochloropsis gaditana)
ATGATCAACGCCTGTGTTTTCAGGCATTGCCCGGTGCAACAAACTTTTCG
AACCCGCATCGCGTACACTTCCCTACATCGACAGGGGACCATCTGCTAGA
CGTTGGACTCCGAAGTGTTGAGTTCTTCGTGATAGTGTCGTCTACCAGTG
GCACAGGAGCCTGTCACTGAGCGTGGGAGGGACCTTCATAAGTAAGCCAT
TTACACGCCACATCGGTCTATTGCCTGTAGAAGACCATAACTACGGTGCG
TCAGGCTGTGGAATGTGAGGGTATGAAAATAATCCCTGCGTATTAGCTTT
TTCAATTGGATGGCAACGACGCAAGAGGCGTGGATCTTCGTGCGGGACGT
TGCATTCAGGGGTGGGAGAAATAGAGGAAGAGATTGTGGAATGTCATGCG
CCTTCACCTTGTTTTGGACTGTGCTACGCTCGCAACAGAAATGCATGGAT
GGAGATTCCGAAGGTAGAGTGCTCTCCAAATTTCCTGCACAGATCCCTCA
CGAGTTGCCCTTCCGTTTCCTTAGATGCCGTTCCGTGTCaactttccctc
tttttttatGGCCCTGATCCGTGCGCCGACCCAAGCCACGCCCTATCAAG
CCGTGTTCCGCGTCTCGCCTTCCATGAACAAGCCAGAAATACGGGAATAT
CTGACCAAAATCTACGGTTTGAACGTCCGCAAGGTGATGACTGCCAACAT
GGCCGGACGGCGCAAAAGGTGAGGATGCCTGTGTCTGTCGGCGCCTTCCA
TGCGACCCCGACGCACTGACCCCCGTCGTGTCCGAAAGGGTACCTGTGTG
TACTCTTGGAGGCTGAAACGTTTCAATTGTAGTTTTTTGTTGTATCGATG
CAAGGAATGAGCTGTGGTTGGACCGGACCTGTTTTACGGAGAAGTACACC
GTCAAACGGGCTGATGCTGCCATTGGCAAGACAAGGCCCTTTCTAGTTCG
TTTTTCATGCGTGCCTTTGCTGTTTCCCACCCCTGTCCTCTCCGCGTCGA
CGGGTCTGACTCCATATgtgctctccccccctctgtcccttctcttcgtg
TTTCTCAGGATCATGGGCTCCCGGCGGATACTCCGATACAAACGCCCGGA
CTTTAA

Coding sequence (CDS) from alignment at CM002462.1:153671..154776+

>rna3826 ID=rna3826|Name=rna3826|organism=Nannochloropsis gaditana|type=CDS|length=1512bp|location=Sequence derived from alignment at CM002462.1:153671..154776+ (Nannochloropsis gaditana)
ATGATCAACGCCTTTCTTCGTGATAGTGTCGTCTACCAGTGGCACAGGAG
CCTGTCACTGAGCGTGGGAGGGACCTTCATAAGTAAGCCATTTACACGCC
ACATCGGTCTATTGCCTGTAGAAGACCATAACTACGATGCCGTTCCGTGT
CaactttccctctttttttatGGCCCTGATCCGTGCGCCGACCCAAGCCA
CGCCCTATCAAGCCGTGTTCCGCGTCTCGCCTTCCATGAACAAGCCAGAA
ATACGGGAATATCTGACCAAAATCTACGGTTTGAACGTCCGCAAGGTGAT
GACTGCCAACATGGCCGGACGGCGCAAAAGGATCATGGGCTCCCGGCGGA
TACTCCGATACAAACGCCCGGACTTTAAATGATCAACGCCTTTCTTCGTG
ATAGTGTCGTCTACCAGTGGCACAGGAGCCTGTCACTGAGCGTGGGAGGG
ACCTTCATAAGTAAGCCATTTACACGCCACATCGGTCTATTGCCTGTAGA
AGACCATAACTACGATGCCGTTCCGTGTCaactttccctctttttttatG
GCCCTGATCCGTGCGCCGACCCAAGCCACGCCCTATCAAGCCGTGTTCCG
CGTCTCGCCTTCCATGAACAAGCCAGAAATACGGGAATATCTGACCAAAA
TCTACGGTTTGAACGTCCGCAAGGTGATGACTGCCAACATGGCCGGACGG
CGCAAAAGGATCATGGGCTCCCGGCGGATACTCCGATACAAACGCCCGGA
CTTTAAATGATCAACGCCTTTCTTCGTGATAGTGTCGTCTACCAGTGGCA
CAGGAGCCTGTCACTGAGCGTGGGAGGGACCTTCATAAGTAAGCCATTTA
CACGCCACATCGGTCTATTGCCTGTAGAAGACCATAACTACGATGCCGTT
CCGTGTCaactttccctctttttttatGGCCCTGATCCGTGCGCCGACCC
AAGCCACGCCCTATCAAGCCGTGTTCCGCGTCTCGCCTTCCATGAACAAG
CCAGAAATACGGGAATATCTGACCAAAATCTACGGTTTGAACGTCCGCAA
GGTGATGACTGCCAACATGGCCGGACGGCGCAAAAGGATCATGGGCTCCC
GGCGGATACTCCGATACAAACGCCCGGACTTTAAATGATCAACGCCTTTC
TTCGTGATAGTGTCGTCTACCAGTGGCACAGGAGCCTGTCACTGAGCGTG
GGAGGGACCTTCATAAGTAAGCCATTTACACGCCACATCGGTCTATTGCC
TGTAGAAGACCATAACTACGATGCCGTTCCGTGTCaactttccctctttt
tttatGGCCCTGATCCGTGCGCCGACCCAAGCCACGCCCTATCAAGCCGT
GTTCCGCGTCTCGCCTTCCATGAACAAGCCAGAAATACGGGAATATCTGA
CCAAAATCTACGGTTTGAACGTCCGCAAGGTGATGACTGCCAACATGGCC
GGACGGCGCAAAAGGATCATGGGCTCCCGGCGGATACTCCGATACAAACG
CCCGGACTTTAA

Synonyms

Publications