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Properties
| Property Name | Value |
|---|
| Product | Uncharacterized protein family UPF0047 |
| Orig transcript id | gnl|cribi|Naga_100097g6.3753.mrna |
| Orig protein id | gnl|cribi|Naga_100097g6.3753 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:134720..136428 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3820 ID=rna3820|Name=rna3820|organism=Nannochloropsis gaditana|type=mRNA|length=5224bp
AGCTCTGTTCTCGTGTCTGCGGATGATAACGGTCCCTTTGCACCGAAATT
TTCGATGAAATAACCATGACGGGCGCCACGTACTACGTAGTACTACGCAC
ACGGAAAACCGCAGGCCTTCGGACGACAGTAATTCGATTCATGTCAACCA
AAATACCCTTGTAATACATACATTCACTTTTTGATCTCATAAAAAACTTT
ATTAAACGTTATAATCTTCTTATAGGACGCGAGCCTTCCATCATGTCGAG
TACAAAGGCATTTTTGTCGCGGAGCGTCATACTCGTCGCCATTTTGGCTT
ACCTCTTGCGTCCCATCAATCGTCCATCTTTTACCGTAATTGAACCTCTT
AATCCACAAGACCCCATCAACCTACCGTCTGGTACTTCTCGCCGCGTCCT
TGTCGCAGGAGGCGGCCTGGCAGGGTTATCGGCCGCCTTGGAATTGGCTG
AACGCGGGTTTCAGGTTTCTGTATGGGAAGCCTCCCCTGTATTAGGTGGC
AGATTGGCCACGCGAACGGTGCAACTTTGCAATCAGACCTTTGCAATAGA
GCATGGTTTCCACGCCTGGTTCGCAAATTATCACGTTTTCGCCGACATTC
GAAAACGATTGGGCATTGACCATTATTTTCGACCGTGGGGTGCCGTCCAA
TTTATCTTTAAAGACCCTCGGTACAAACCAGAAGCTCTGGAAAGTCAAGG
GCCATACCCATGGAATCTAATCTCCATCGTCCTCCGTTCCCCCAATCTCC
GCTTCATCGACGCCATCCTTTCCACCCGCCATGTCGTGGATTTGCTCTGG
TTCGACCACAAAACTGTCTGGGGCAAGTACGACGAGCAATCTTTTTCGGA
ATGGGCTCGGGCCATGGGGATTGCCCGGGTATTCTACGACGTGCTGTACG
CGCCCACGCTATCCGTGACGGTCAACGAGCGGCAAAACATCAGTGCTGCG
GAAATGCTGAGCATGAACCACATATATTTCCTCAGCCATCCCAGGGCGGA
CCGTCGCGAGGTGACCCGGGTTGATTACGAAACGGCGATTATCCAGCCGT
GGGAAATGCGGTTGCAGGCGTTGGGGGTGAAGATCGAGCGAGGGAAGAGG
GTGGGAAGACTCAATTTCACCGAGACAGGGGTCCATGTTGTCGAGGAAGA
GGAAGAGGGGGAGGAAGGGGTAGCTGGGAGCGACTTTGATCATGTCGTGC
TCGCCACGAATCTGCAAGGGGTCAAGTCGATCCTGGATGCTTCCTCCGTC
TCCCCCCCTTCCTCCCTCTCGTCCCCCTCCCCTCCTTCCACCGCGTCGTC
CTTCTCGTACGTGACGAGCACGGCCGCCCTCGCCCAGCTCCGTCATCAAA
CTTCCTTTTTAGAAATTGCTCCCCCTTACAAGGTGTTCCGCGCCTATTTC
GACCGACAGCTCCGGGGACCGTACAACCAAGAGATCGTGCTGGAGACCCC
AGACTCCTCCCCCATCAACCTGATCGCCCAGTATCACCTCCTGGAGGAGG
AGTCGGCCGAATGGGCCCGCCGAACGGGGGGCAGCGTCATCGAGTTCCAT
TTGTATACGTGGGAGGGGGGGTACGACGGGGGGAAGGGGGACAAATTCGC
AGCAGGAGAGGAAGTGCGTGTCCTCTGGGAGTTCCTTCGGCCCACCGTGT
GCGGGCATCTGCTTCCCGAAATGTGTGCGCAAAACTTCACGTTGGTGGAT
GGGTATGTGGCCCATTACGAGGATTTCCCGTCCTTCAAAAAGGGCTTGCA
CAAATACCGCCCCCGAAGCCAGACGCCCCACCAACTGGGCCTGACTCGCT
TGAGCCTCGCAGGGGACTGGCTCTCCACCAGTTTCCCTTCCGCGCTGATG
GAACGGGCGGTGGCAACGGGGCGGGAGGCGGCCAACGTGGTGTTGCAAGA
GGAGGGGATCCGCCAGGCGCCACTGCCCGTCACGACTTCTCACGGGCCAG
GACTGCGGGTGCTGGCTTCGTAGGGAGGGAGGGAGAGAGGGAGGGAGGGA
GAGAGGGAGGGAGGGAGAGAGGGAGGGAGGGAGAGAGGGAGGGCGTGCTG
GCACTTGGCGGTGCTGCACTTTTGGGGAGATGGTAAATAGACATGCACGA
GGTTTTTAGGCGAAGAGTGAGCTTCGACTTTCAAGGAAGGGAACAGGAGC
GAGTTGAAGCTCGCATTAAGTGCTAGGATAAGCCCTTGGTCCTAGAGGTG
ATGGAAAAGAGTGTTAGGGTAAGGGGTGGAAAAGGGTTGAAAAGGAGACC
ACCGTCCATGTATTTAATAGAAAGCAAGAAGGAAAGCGGCGAGCGGGTCA
ATGGATCGGTCATGCACGCAGATCTCTCCAACGCACCGGGAACCAAGATA
AGGGGAAGGGTAAGGCCAGTCCCCTTCATGTCCAAACATGGAGCCTCCAA
CCCTCCTTTGCGCCAAGGCGGGGGTCTCAAGACAGCGTTTTCTTTGTGTT
TGCAGTCCAGTTCCCCTGCTATCAGCGCTCTTTACATGGGCACCGTAGGG
TTCCGTCCCGGGGTAGGCCAAAGGAGGCTTTCCTCATCAATTCTACGAAG
CACTTCGACGCGTCACGCCAGGATATGGCCATTCATTCAGTCTACTTTTC
CTTCCTTCAAACCCACAAAGCCTTGCCCCTCGCCGACATTCGCCTGCCCC
TCGCCTTTCCATCTTGGATATACCCCCGGGGAACCCCATCTTCTTCGTCG
CTCATTCATAGCCCACCACTTGGATACCCACCGTCCTCTCCCTCTCCCCG
TCCAGCTCCACCATCATCACCGATTGCCAACGGCCAATTTTCAACTTCCC
CCCGCTCACGGGCACCACCAAAGTGTTTCCCAACAGCATGGACAACAAAT
GCGCGTGGCAATTTTGAGGTTCCTGGGCCCGCCACTCTTCCACGCTCTCC
CACTCCCCTCCTGCTGCCACCCTCCGTTTGTCCTCCTCGGAAGCCGGGCG
CAAATGGATGTCGTTGTGGAGGTACGGGTACTGGGGAGGGGCCAACTTCA
AAAGAAATTGGCGAATATCATCCATCAGACGGCTTTCACATTCGTTGATC
GTCACGGCCGTGGTAGTGTGACGGCTGACGATATGGACCCATCCTTCCAC
CACCCCGGACTCCCGCACCGCCTGTCGAAGCTGCGGCGTGATGTCGTGCA
GGGAGATGCCTGAAGGAGAGGACGAGAGCGAGGAAGGAGGGGAGGTACCA
TGGAGTGATGAATGCCTGGCAAGATGGTACGATTATCAATGTCACCAGAC
GACAGTCCCGTCATGCTTTTCGTCGAACGCTTTCATGGCATGTCTTACCG
CTCTTGGTCGGAAGGCTTATTTCCAGGTAACTAGTCACGGATGGTCCAGT
GTGTTTCTTCGTGTGCTGGGCGCCAAAGCTTACCTTCTCCCCCGTGCCCG
TCGTGTCAACCACGTCCGGATCGGGGAGAGAGGCACGATGCACCTCCAGG
GCTGGCGAAGGGGGATGGTATTGATCTGGGGGGGGGATGTATGGGTTGCA
AAGGGACATAAGGGGAGGGCAAATTTTCAAAAAGTTGAATGCGCGACAGT
ATCGTAGCGAGGAAAGGGGAGTCATATGATAACAGGGCAGGTCAAATTGC
TAACATGGAGAAAAGAACCGCAGGAGGTGGAGGATGGGGGCTTGCTTGCC
CAATTTTTGGTGTGGCATCTCTAGCAGTACCTGATGGTACCGAGGAAATG
GAGCTATGCGTGTCATGAATGAGCTGGAGGGCAGCTTGTAGATGACCGTG
GGCAAGCAGAGTCGTTGTGATTGTCGTAGGAAGACGAGGTAGAGGTGATA
GGGGCTGCTTGAACGACTTTGTTGAGGTAATGAAGGCAAACGTTGAAACA
CCCACGTATGCAAAAAGCAACAGAGTTATAAAAGGAAGGGTAGTACTCCT
GAGCGCCATTTCAATCTGTAGCGTGCTAATACGGTATGAATGTCGTCTTA
GGGGGTCAAAGTGGTCAACAATAATCAAGGATTATCCGCAATTGGATGCT
GAGGAGAGATCATCACTCGCCGTGGGCGGGCAAACGTTCTTGGAACAACT
TCAACACGCAATTCCCCGAGGGAAAAAAAAACACATAGAAGGTCCTCGCA
TCCACACATGCGCCTTTCCATGCGATATATTCAACTTCGACGCTATGAAA
TATTCGTCTTGTCCGACGGAGGTATCATTTTTCCGTTTGTACCACGGCGT
AGACTTTCTTCAAAAGCACTTTTATGTCACCCCCGAGGTGTTTGTGGCAA
CGTTTACTCCGTCCATATGACAAACGGTTTAATGTACCGTATCAAACTGA
CAATTTTTTAATTTGCTATACGTTCTATGGGGAAAAGAGGACGGAAAAGC
GTGCTAACTTGAACGCATCTGATGATGTGTTTCCCATAGGGCTTCACTGC
GTCGACTCGTCACTGGTCGAAGAGAAGCACAATTGCTCTAGAAATCGGAC
GATTACCGCATCGATTAAGACAGCAGACCTGATACCATGCTCTTTGATGA
GTAAATCAGTTGCAAGGTGATTTCGGCCGCTTTTTGGAACCGTCTAGGCT
GCTGCCAATGGCGTTCCATTCTTAAGCTCCAATGCAGAGGATGTATTCAG
GTCAAAGTCCCTTATTCACGTCACGCTTATCTACTCTGCTTAATAATTGT
TACCTCGCCAGAGCAAGATCCACCTTTCGTACAATTGTTGGGCTCGACCG
TTTAAGGACGTATTTGAAGCCCTCCAAGATTTCATTTTTACATCAATCAC
CCCATACCTTATCTGGGGGACTGCTAATTGATCATGAATAAATCATATCC
CCTATTTTTTGCCATAATCTTTTATCCAAGTTGAAATACGCTGAGTGGGG
AATTGTGAAATTCTTTAGAAGTCCCAATGTTATCGAAATCGGTGGTTCTG
CTATGAAAGCATCGGTATGGAAAATAAAGTACAAAGTGAAAAAGGTACAC
AACACATGACGGGCTTAAGACGGGTAATTAAAATATCTTTGAATCCTTTT
GAATTTCACGCTTATTTCAGTAACTCGGCCACGTGTTCGCCATTTAAGGG
CGCGGAAGTGGCGGCAAAAATATAAACTCAAGACAAGACTCTGAGCTGTC
ATGTTCGGTTGATCAAACTTTGAGGGCTTCATTCTGGGGCAAAATTGTTT
CTGTCAGATTTGGCTTCAGGTGGCCTATTGTGGCTTCCGCGCGCAGCTTA
GAGTGTTGACAGACTCTTGAAAAC back to topprotein sequence of rna3820 >rna3820-protein ID=rna3820-protein|Name=rna3820|organism=Nannochloropsis gaditana|type=polypeptide|length=287bp
MALRSTTLPFITLLLFAYVGVSTFAFITSTKSFKQPLSPLPRLPTTITTT
LLAHGHLQAALQLIHDTHSSISSVPSDQYHPPSPALEVHRASLPDPDVVD
TTGTGEKVSFGAQHTKKHTGPSVTSYLEISLPTKSGISLHDITPQLRQAV
RESGVVEGWVHIVSRHTTTAVTINECESRLMDDIRQFLLKLAPPQYPYLH
NDIHLRPASEEDKRRVAAGGEWESVEEWRAQEPQNCHAHLLSMLLGNTLV
VPVSGGKLKIGRWQSVMMVELDGERERTVGIQVVGYE back to topmRNA from alignment at CM002462.1:134720..136428- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3820 ID=rna3820|Name=rna3820|organism=Nannochloropsis gaditana|type=mRNA|length=1709bp|location=Sequence derived from alignment at CM002462.1:134720..136428- (Nannochloropsis gaditana)
GATAATCCTTGATTATTGTTGACCACTTTGACCCCCTAAGACGACATTCA
TACCGTATTAGCACGCTACAGATTGAAATGGCGCTCAGGAGTACTACCCT
TCCTTTTATAACTCTGTTGCTTTTTGCATACGTGGGTGTTTCAACGTTTG
CCTTCATTACCTCAACAAAGTCGTTCAAGCAGCCCCTATCACCTCTACCT
CGTCTTCCTACGACAATCACAACGACTCTGCTTGCCCACGGTCATCTACA
AGCTGCCCTCCAGCTCATTCATGACACGCATAGCTCCATTTCCTCGGTAC
CATCAGGTACTGCTAGAGATGCCACACCAAAAATTGGGCAAGCAAGCCCC
CATCCTCCACCTCCTGCGGTTCTTTTCTCCATGTTAGCAATTTGACCTGC
CCTGTTATCATATGACTCCCCTTTCCTCGCTACGATACTGTCGCGCATTC
AACTTTTTGAAAATTTGCCCTCCCCTTATGTCCCTTTGCAACCCATACAT
CCCCCCCCCAGATCAATACCATCCCCCTTCGCCAGCCCTGGAGGTGCATC
GTGCCTCTCTCCCCGATCCGGACGTGGTTGACACGACGGGCACGGGGGAG
AAGGTAAGCTTTGGCGCCCAGCACACGAAGAAACACACTGGACCATCCGT
GACTAGTTACCTGGAAATAAGCCTTCCGACCAAGAGCGGTAAGACATGCC
ATGAAAGCGTTCGACGAAAAGCATGACGGGACTGTCGTCTGGTGACATTG
ATAATCGTACCATCTTGCCAGGCATTCATCACTCCATGGTACCTCCCCTC
CTTCCTCGCTCTCGTCCTCTCCTTCAGGCATCTCCCTGCACGACATCACG
CCGCAGCTTCGACAGGCGGTGCGGGAGTCCGGGGTGGTGGAAGGATGGGT
CCATATCGTCAGCCGTCACACTACCACGGCCGTGACGATCAACGAATGTG
AAAGCCGTCTGATGGATGATATTCGCCAATTTCTTTTGAAGTTGGCCCCT
CCCCAGTACCCGTACCTCCACAACGACATCCATTTGCGCCCGGCTTCCGA
GGAGGACAAACGGAGGGTGGCAGCAGGAGGGGAGTGGGAGAGCGTGGAAG
AGTGGCGGGCCCAGGAACCTCAAAATTGCCACGCGCATTTGTTGTCCATG
CTGTTGGGAAACACTTTGGTGGTGCCCGTGAGCGGGGGGAAGTTGAAAAT
TGGCCGTTGGCAATCGGTGATGATGGTGGAGCTGGACGGGGAGAGGGAGA
GGACGGTGGGTATCCAAGTGGTGGGCTATGAATGAGCGACGAAGAAGATG
GGGTTCCCCGGGGGTATATCCAAGATGGAAAGGCGAGGGGCAGGCGAATG
TCGGCGAGGGGCAAGGCTTTGTGGGTTTGAAGGAAGGAAAAGTAGACTGA
ATGAATGGCCATATCCTGGCGTGACGCGTCGAAGTGCTTCGTAGAATTGA
TGAGGAAAGCCTCCTTTGGCCTACCCCGGGACGGAACCCTACGGTGCCCA
TGTAAAGAGCGCTGATAGCAGGGGAACTGGACTGCAAACACAAAGAAAAC
GCTGTCTTGAGACCCCCGCCTTGGCGCAAAGGAGGGTTGGAGGCTCCATG
TTTGGACATGAAGGGGACTGGCCTTACCCTTCCCCTTATCTTGGTTCCCG
GTGCGTTGGAGAGATCTGCGTGCATGACCGATCCATTGACCCGCTCGCCG
CTTTCCTTC back to topCoding sequence (CDS) from alignment at CM002462.1:134720..136428- >rna3820 ID=rna3820|Name=rna3820|organism=Nannochloropsis gaditana|type=CDS|length=2592bp|location=Sequence derived from alignment at CM002462.1:134720..136428- (Nannochloropsis gaditana)
GCATCTCCCTGCACGACATCACGCCGCAGCTTCGACAGGCGGTGCGGGAG
TCCGGGGTGGTGGAAGGATGGGTCCATATCGTCAGCCGTCACACTACCAC
GGCCGTGACGATCAACGAATGTGAAAGCCGTCTGATGGATGATATTCGCC
AATTTCTTTTGAAGTTGGCCCCTCCCCAGTACCCGTACCTCCACAACGAC
ATCCATTTGCGCCCGGCTTCCGAGGAGGACAAACGGAGGGTGGCAGCAGG
AGGGGAGTGGGAGAGCGTGGAAGAGTGGCGGGCCCAGGAACCTCAAAATT
GCCACGCGCATTTGTTGTCCATGCTGTTGGGAAACACTTTGGTGGTGCCC
GTGAGCGGGGGGAAGTTGAAAATTGGCCGTTGGCAATCGGTGATGATGGT
GGAGCTGGACGGGGAGAGGGAGAGGACGGTGGGTATCCAAGTGGTGGGCT
ATGAATGAATCAATACCATCCCCCTTCGCCAGCCCTGGAGGTGCATCGTG
CCTCTCTCCCCGATCCGGACGTGGTTGACACGACGGGCACGGGGGAGAAG
GTAAGCTTTGGCGCCCAGCACACGAAGAAACACACTGGACCATCCGTGAC
TAGTTACCTGGAAATAAGCCTTCCGACCAAGAGCGATGGCGCTCAGGAGT
ACTACCCTTCCTTTTATAACTCTGTTGCTTTTTGCATACGTGGGTGTTTC
AACGTTTGCCTTCATTACCTCAACAAAGTCGTTCAAGCAGCCCCTATCAC
CTCTACCTCGTCTTCCTACGACAATCACAACGACTCTGCTTGCCCACGGT
CATCTACAAGCTGCCCTCCAGCTCATTCATGACACGCATAGCTCCATTTC
CTCGGTACCATCAGGCATCTCCCTGCACGACATCACGCCGCAGCTTCGAC
AGGCGGTGCGGGAGTCCGGGGTGGTGGAAGGATGGGTCCATATCGTCAGC
CGTCACACTACCACGGCCGTGACGATCAACGAATGTGAAAGCCGTCTGAT
GGATGATATTCGCCAATTTCTTTTGAAGTTGGCCCCTCCCCAGTACCCGT
ACCTCCACAACGACATCCATTTGCGCCCGGCTTCCGAGGAGGACAAACGG
AGGGTGGCAGCAGGAGGGGAGTGGGAGAGCGTGGAAGAGTGGCGGGCCCA
GGAACCTCAAAATTGCCACGCGCATTTGTTGTCCATGCTGTTGGGAAACA
CTTTGGTGGTGCCCGTGAGCGGGGGGAAGTTGAAAATTGGCCGTTGGCAA
TCGGTGATGATGGTGGAGCTGGACGGGGAGAGGGAGAGGACGGTGGGTAT
CCAAGTGGTGGGCTATGAATGAATCAATACCATCCCCCTTCGCCAGCCCT
GGAGGTGCATCGTGCCTCTCTCCCCGATCCGGACGTGGTTGACACGACGG
GCACGGGGGAGAAGGTAAGCTTTGGCGCCCAGCACACGAAGAAACACACT
GGACCATCCGTGACTAGTTACCTGGAAATAAGCCTTCCGACCAAGAGCGA
TGGCGCTCAGGAGTACTACCCTTCCTTTTATAACTCTGTTGCTTTTTGCA
TACGTGGGTGTTTCAACGTTTGCCTTCATTACCTCAACAAAGTCGTTCAA
GCAGCCCCTATCACCTCTACCTCGTCTTCCTACGACAATCACAACGACTC
TGCTTGCCCACGGTCATCTACAAGCTGCCCTCCAGCTCATTCATGACACG
CATAGCTCCATTTCCTCGGTACCATCAGGCATCTCCCTGCACGACATCAC
GCCGCAGCTTCGACAGGCGGTGCGGGAGTCCGGGGTGGTGGAAGGATGGG
TCCATATCGTCAGCCGTCACACTACCACGGCCGTGACGATCAACGAATGT
GAAAGCCGTCTGATGGATGATATTCGCCAATTTCTTTTGAAGTTGGCCCC
TCCCCAGTACCCGTACCTCCACAACGACATCCATTTGCGCCCGGCTTCCG
AGGAGGACAAACGGAGGGTGGCAGCAGGAGGGGAGTGGGAGAGCGTGGAA
GAGTGGCGGGCCCAGGAACCTCAAAATTGCCACGCGCATTTGTTGTCCAT
GCTGTTGGGAAACACTTTGGTGGTGCCCGTGAGCGGGGGGAAGTTGAAAA
TTGGCCGTTGGCAATCGGTGATGATGGTGGAGCTGGACGGGGAGAGGGAG
AGGACGGTGGGTATCCAAGTGGTGGGCTATGAATGAATCAATACCATCCC
CCTTCGCCAGCCCTGGAGGTGCATCGTGCCTCTCTCCCCGATCCGGACGT
GGTTGACACGACGGGCACGGGGGAGAAGGTAAGCTTTGGCGCCCAGCACA
CGAAGAAACACACTGGACCATCCGTGACTAGTTACCTGGAAATAAGCCTT
CCGACCAAGAGCGATGGCGCTCAGGAGTACTACCCTTCCTTTTATAACTC
TGTTGCTTTTTGCATACGTGGGTGTTTCAACGTTTGCCTTCATTACCTCA
ACAAAGTCGTTCAAGCAGCCCCTATCACCTCTACCTCGTCTTCCTACGAC
AATCACAACGACTCTGCTTGCCCACGGTCATCTACAAGCTGCCCTCCAGC
TCATTCATGACACGCATAGCTCCATTTCCTCGGTACCATCAG back to top
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