EWM26862.1, cds3811 (CDS) Nannochloropsis gaditana

Overview
NameEWM26862.1
Unique Namecds3811
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:136123..136351 -
Alignment locationCM002462.1:135741..135917 -
Alignment locationCM002462.1:135144..135601 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26862.1
ProductUncharacterized protein family UPF0047
Orig transcript idgnl|cribi|Naga_100097g6.3753.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:136123..136351 -
CM002462.1supercontigCM002462.1:135741..135917 -
CM002462.1supercontigCM002462.1:135144..135601 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR001602UPF0047
Homology
BLAST of EWM26862.1 vs. NCBI_GenBank
Match: gi|585108957|gb|EWM26862.1| (Uncharacterized protein family UPF0047 [Nannochloropsis gaditana])

HSP 1 Score: 587.415 bits (1513), Expect = 0.000e+0
Identity = 287/287 (100.00%), Postives = 287/287 (100.00%), Query Frame = 0
Query:    1 MALRSTTLPFITLLLFAYVGVSTFAFITSTKSFKQPLSPLPRLPTTITTTLLAHGHLQAALQLIHDTHSSISSVPSDQYHPPSPALEVHRASLPDPDVVDTTGTGEKVSFGAQHTKKHTGPSVTSYLEISLPTKSGISLHDITPQLRQAVRESGVVEGWVHIVSRHTTTAVTINECESRLMDDIRQFLLKLAPPQYPYLHNDIHLRPASEEDKRRVAAGGEWESVEEWRAQEPQNCHAHLLSMLLGNTLVVPVSGGKLKIGRWQSVMMVELDGERERTVGIQVVGYE 287
            MALRSTTLPFITLLLFAYVGVSTFAFITSTKSFKQPLSPLPRLPTTITTTLLAHGHLQAALQLIHDTHSSISSVPSDQYHPPSPALEVHRASLPDPDVVDTTGTGEKVSFGAQHTKKHTGPSVTSYLEISLPTKSGISLHDITPQLRQAVRESGVVEGWVHIVSRHTTTAVTINECESRLMDDIRQFLLKLAPPQYPYLHNDIHLRPASEEDKRRVAAGGEWESVEEWRAQEPQNCHAHLLSMLLGNTLVVPVSGGKLKIGRWQSVMMVELDGERERTVGIQVVGYE
Sbjct:    1 MALRSTTLPFITLLLFAYVGVSTFAFITSTKSFKQPLSPLPRLPTTITTTLLAHGHLQAALQLIHDTHSSISSVPSDQYHPPSPALEVHRASLPDPDVVDTTGTGEKVSFGAQHTKKHTGPSVTSYLEISLPTKSGISLHDITPQLRQAVRESGVVEGWVHIVSRHTTTAVTINECESRLMDDIRQFLLKLAPPQYPYLHNDIHLRPASEEDKRRVAAGGEWESVEEWRAQEPQNCHAHLLSMLLGNTLVVPVSGGKLKIGRWQSVMMVELDGERERTVGIQVVGYE 287          
BLAST of EWM26862.1 vs. NCBI_GenBank
Match: gi|255073395|ref|XP_002500372.1| (predicted protein [Micromonas commoda] >gi|226515635|gb|ACO61630.1| predicted protein [Micromonas commoda])

HSP 1 Score: 213.386 bits (542), Expect = 2.393e-65
Identity = 106/174 (60.92%), Postives = 130/174 (74.71%), Query Frame = 0
Query:  112 AQHTKKHTGPSVTSYLEISLPTKSGISLHDITPQLRQAVRESGVVEGWVHIVSRHTTTAVTINECESRLMDDIRQFLLKLAPPQYPYLHNDIHLRPASEEDKRRVAAGGEWESVEEWRAQEPQNCHAHLLSMLLGNTLVVPVSGGKLKIGRWQSVMMVELDGERERTVGIQVVG 285
            A + + +   SV  Y ++SL T  GISLHDITPQ+R+A+RESGV  G V+++SRHTTTAVTINE E RLMDDIRQ++LKLAPP  PYLHNDIHLR    +       GG     + WRAQEP+N H+HLLS+L+GNTL VPV  G+L IG WQS+M+VELDG R+RTVG+QV G
Sbjct:    7 ASYRRDNVVESVFEYTQLSLDTSLGISLHDITPQVRRAIRESGVTNGTVNVLSRHTTTAVTINEAEGRLMDDIRQYMLKLAPPGDPYLHNDIHLRDGPPD-----WPGGN----DAWRAQEPRNAHSHLLSILIGNTLAVPVVDGELAIGTWQSLMLVELDGPRKRTVGVQVCG 171          
BLAST of EWM26862.1 vs. NCBI_GenBank
Match: gi|302847403|ref|XP_002955236.1| (hypothetical protein VOLCADRAFT_106701 [Volvox carteri f. nagariensis] >gi|300259528|gb|EFJ43755.1| hypothetical protein VOLCADRAFT_106701 [Volvox carteri f. nagariensis])

HSP 1 Score: 196.438 bits (498), Expect = 2.038e-59
Identity = 96/160 (60.00%), Postives = 126/160 (78.75%), Query Frame = 0
Query:  125 SYLEISLP-TKSGISLHDITPQLRQAVRESGVVEGWVHIVSRHTTTAVTINECESRLMDDIRQFLLKLAPPQYPYLHNDIHLRPASEEDKRRVAAGGEWESVEEWRAQEPQNCHAHLLSMLLGNTLVVPVSGGKLKIGRWQSVMMVELDGERERTVGIQV 283
            +Y ++ +P T  GI+L DITPQ+R+ V ++G++EG VH++SRHTTTA+TINE E+RL+DD+RQFL +LAPP  PYLHND+HLRPA +      +  G W +   W AQEP+N H+HLLSMLLGNTL VPV+GGKL +G WQSVM+VELDG R R+VG+Q+
Sbjct:   24 NYHQLEVPQTPPGIALIDITPQIRELVAQAGLMEGCVHVLSRHTTTALTINENEARLLDDVRQFLARLAPPTDPYLHNDLHLRPAPD------SWPGGWAA---WAAQEPRNAHSHLLSMLLGNTLTVPVTGGKLALGTWQSVMLVELDGPRPRSVGVQL 174          
BLAST of EWM26862.1 vs. NCBI_GenBank
Match: gi|551639420|ref|XP_005822519.1| (hypothetical protein GUITHDRAFT_79753, partial [Guillardia theta CCMP2712] >gi|428166566|gb|EKX35539.1| hypothetical protein GUITHDRAFT_79753, partial [Guillardia theta CCMP2712])

HSP 1 Score: 190.274 bits (482), Expect = 1.868e-57
Identity = 88/154 (57.14%), Postives = 120/154 (77.92%), Query Frame = 0
Query:  137 ISLHDITPQLRQAVRESGVVEGWVHIVSRHTTTAVTINECESRLMDDIRQFLLKLAPPQYPYLHNDIHLRPASEEDKRRVAAGGEWE-----SVEEWRAQEPQNCHAHLLSMLLGNTLVVPVSGGKLKIGRWQSVMMVELDGERERTVGIQVVG 285
            IS+ DITP++++ ++ SG+  G+V+++SRHTTTAV INE ESRL+ D++ + LK+APP   YLHN+IHLRP ++EDKRRV     W+      +E WR+QEP N H+HLLSM+LGN+  +PVS G+L IG+WQSVM+V+LDG R+RTVGIQV G
Sbjct:    1 ISVWDITPEIKELIKTSGMKNGFVNVISRHTTTAVMINEYESRLIKDLKDYFLKIAPPDAKYLHNEIHLRPETQEDKRRVLLNN-WDINDPAVLEAWRSQEPFNAHSHLLSMMLGNSESIPVSNGELAIGQWQSVMLVDLDGPRKRTVGIQVFG 153          
BLAST of EWM26862.1 vs. NCBI_GenBank
Match: gi|159472955|ref|XP_001694610.1| (predicted protein [Chlamydomonas reinhardtii] >gi|158276834|gb|EDP02605.1| predicted protein, partial [Chlamydomonas reinhardtii])

HSP 1 Score: 186.808 bits (473), Expect = 3.972e-56
Identity = 91/153 (59.48%), Postives = 113/153 (73.86%), Query Frame = 0
Query:  133 TKSGISLHDITPQLRQAVRESGVVEGWVHIVSRHTTTAVTINECESRLMDDIRQFLLKLAPPQYPYLHNDIHLRPASEEDKRRVAAGGEWESVEEWRAQEPQNCHAHLLSMLLGNTLVVPVSGGKLKIGRWQSVMMVELDGERERTVGIQVVG 285
            T  GI+L D+TPQ+R+ V +SG+VEG V+++SRHTTTAVTINE E+RLMDD+RQFL KLAP   PYLHND+HLRPA E+                    EPQN H+HLLSM+LGNTL +PVSG +L +G WQSV++VELDG R RTVG+Q+ G
Sbjct:   11 TPPGIALVDVTPQIRELVSQSGLVEGTVNVLSRHTTTAVTINENETRLMDDVRQFLSKLAPASAPYLHNDLHLRPAPED-------------------CEPQNAHSHLLSMVLGNTLAIPVSGSRLALGTWQSVLLVELDGPRPRTVGVQLTG 144          
BLAST of EWM26862.1 vs. NCBI_GenBank
Match: gi|552846952|ref|XP_005851746.1| (hypothetical protein CHLNCDRAFT_18455 [Chlorella variabilis] >gi|307111410|gb|EFN59644.1| hypothetical protein CHLNCDRAFT_18455 [Chlorella variabilis])

HSP 1 Score: 186.422 bits (472), Expect = 7.183e-56
Identity = 96/163 (58.90%), Postives = 120/163 (73.62%), Query Frame = 0
Query:  127 LEISLPTKSGISLHDITPQLR--QAVRESGVVEGWVHIVSRHTTTAVTINECESRLMDDIRQFLLKLAPPQYPYLHNDIHLRPASEEDKRRVAAGGEWESVEEWRAQEPQNCHAHLLSMLLGNTLVVPVSGGKLKIGRWQSVMMVELDGERERTVGIQVVGYE 287
            +++ L TK GI + DITPQ R  QA R  GV EG+V+I+SRHTTTA+ INECE+RL+DDIRQFL KLAPP  PYLHND+  R A  +        G WE+     AQEP+N H+HLLSM+LGN+  VP++GG+L +G WQSVM+VELDG R RTVG+QVVG +
Sbjct:    1 MQLELETKPGIHIVDITPQARGLQAAR-LGVAEGFVNILSRHTTTAIAINECEARLLDDIRQFLRKLAPPNEPYLHNDLQYREAPPDWP------GGWEAA----AQEPENAHSHLLSMVLGNSETVPITGGRLALGTWQSVMLVELDGARTRTVGVQVVGTQ 152          
BLAST of EWM26862.1 vs. NCBI_GenBank
Match: gi|612395702|ref|XP_007513371.1| (protein of unknown function UPF0047 [Bathycoccus prasinos] >gi|412993396|emb|CCO16929.1| protein of unknown function UPF0047 [Bathycoccus prasinos])

HSP 1 Score: 182.956 bits (463), Expect = 1.641e-53
Identity = 89/164 (54.27%), Postives = 118/164 (71.95%), Query Frame = 0
Query:  124 TSYLEISL-PTKSGISLHDITPQLRQAVRESGVVEGWVHIVSRHTTTAVTINECESRLMDDIRQFLLKLAPPQYPYLHNDIHLRPASEEDKRRVAAGGEWE-SVEEWRAQEPQNCHAHLLSMLLGNTLVVPVSGGKLKIGRWQSVMMVELDGERERTVGIQVVG 285
            TSY  ++L  T+ GI+  D+     + + ++G+  G V + SRHTTTAVTINE E RL+DD RQFLLKL PP YPYLHND+H+R   ++D+        W+ +VEEWRAQEP N H+HL++MLLG ++ VP+  GK+ +G WQS++ VELDGERERTVGIQV G
Sbjct:   69 TSYETVNLGKTQHGIAFTDLNNICNEMIAKNGIKNGQVVVHSRHTTTAVTINEYEERLVDDARQFLLKLVPPLYPYLHNDLHVRFPPDDDR--------WKGTVEEWRAQEPLNAHSHLIAMLLGQSVTVPICDGKMTLGTWQSILFVELDGERERTVGIQVSG 224          
BLAST of EWM26862.1 vs. NCBI_GenBank
Match: gi|553189829|ref|XP_005855082.1| (hypothetical protein NGA_2056300, partial [Nannochloropsis gaditana CCMP526] >gi|422293979|gb|EKU21279.1| hypothetical protein NGA_2056300, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 175.637 bits (444), Expect = 1.535e-52
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0
Query:  135 SGISLHDITPQLRQAVRESGVVEGWVHIVSRHTTTAVTINECESRLMDDIRQFLLKLAPPQYPYLHNDIHLRPASEEDKRRVA 217
            SGISLHDITPQLRQAVRESGVVEGWVHIVSRHTTTAVTINECESRLMDDIRQFLLKLAPPQYPYLHNDIHLRPASEEDKRRVA
Sbjct:    5 SGISLHDITPQLRQAVRESGVVEGWVHIVSRHTTTAVTINECESRLMDDIRQFLLKLAPPQYPYLHNDIHLRPASEEDKRRVA 87          
BLAST of EWM26862.1 vs. NCBI_GenBank
Match: gi|693499388|emb|CEF98202.1| (Uncharacterised protein family UPF0047 [Ostreococcus tauri])

HSP 1 Score: 176.792 bits (447), Expect = 1.769e-51
Identity = 94/165 (56.97%), Postives = 114/165 (69.09%), Query Frame = 0
Query:  123 VTSYLEISLPTK-SGISLHDITPQLRQAVRESGVVEGWVHIVSRHTTTAVTINECESRLMDDIRQFLLKLAPPQYPYLHNDIHLRPASEEDKRRVAAGGEWESVEE-WRAQEPQNCHAHLLSMLLGNTLVVPVSGGKLKIGRWQSVMMVELDGERERTVGIQVVG 285
            V  Y  I L T   GI   D++  + +A+  +GV EG VH++SRHTTTAVTINE E RL+DD R +L +LAP    YLHND+        D+RR  A  +W   +E WRAQEP+NCH+HLLSML+GN+ VVPVS GK  +G WQSVM VELDG RERTVGIQVVG
Sbjct:   48 VYRYETIDLGTTLGGIDFKDLSEHIDRAIERAGVREGAVHVISRHTTTAVTINENEERLIDDARMYLSRLAPADDFYLHNDL--------DRRRGPA--DWPGGDEAWRAQEPRNCHSHLLSMLIGNSAVVPVSEGKTTLGTWQSVMFVELDGPRERTVGIQVVG 202          
BLAST of EWM26862.1 vs. NCBI_GenBank
Match: gi|145347359|ref|XP_001418136.1| (predicted protein [Ostreococcus lucimarinus CCE9901] >gi|144578365|gb|ABO96429.1| predicted protein [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 170.629 bits (431), Expect = 2.353e-49
Identity = 91/165 (55.15%), Postives = 111/165 (67.27%), Query Frame = 0
Query:  122 SVTSYLEISLP-TKSGISLHDITPQLRQAVRESGVVEGWVHIVSRHTTTAVTINECESRLMDDIRQFLLKLAPPQYPYLHNDIHLRPASEEDKRRVAAGGEWESVEEWRAQEPQNCHAHLLSMLLGNTLVVPVSGGKLKIGRWQSVMMVELDGERERTVGIQVVG 285
            +V +Y  I+L  T +G    D+T  +  AV +SGV  G VH++SRHTTTAVTINE E+RLMDD R +  KLAP    YLHND+  R    +       GG+    E WRAQEP+NCHAHLLSM++GN+  +PVS GK  +G WQS M VELDG RERTVGIQVVG
Sbjct:   27 TVYAYETIALGRTLTGTHFIDLTEHIDAAVAKSGVKNGVVHVLSRHTTTAVTINENEARLMDDARMYFAKLAPATDFYLHNDLDRRSGPAD-----WPGGD----EAWRAQEPENCHAHLLSMVIGNSETIPVSEGKTTLGTWQSCMFVELDGPRERTVGIQVVG 182          
The following BLAST results are available for this feature:
BLAST of EWM26862.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108957|gb|EWM26862.1|0.000e+0100.00Uncharacterized protein family UPF0047 [Nannochlor... [more]
gi|255073395|ref|XP_002500372.1|2.393e-6560.92predicted protein [Micromonas commoda] >gi|2265156... [more]
gi|302847403|ref|XP_002955236.1|2.038e-5960.00hypothetical protein VOLCADRAFT_106701 [Volvox car... [more]
gi|551639420|ref|XP_005822519.1|1.868e-5757.14hypothetical protein GUITHDRAFT_79753, partial [Gu... [more]
gi|159472955|ref|XP_001694610.1|3.972e-5659.48predicted protein [Chlamydomonas reinhardtii] >gi|... [more]
gi|552846952|ref|XP_005851746.1|7.183e-5658.90hypothetical protein CHLNCDRAFT_18455 [Chlorella v... [more]
gi|612395702|ref|XP_007513371.1|1.641e-5354.27protein of unknown function UPF0047 [Bathycoccus p... [more]
gi|553189829|ref|XP_005855082.1|1.535e-52100.00hypothetical protein NGA_2056300, partial [Nannoch... [more]
gi|693499388|emb|CEF98202.1|1.769e-5156.97Uncharacterised protein family UPF0047 [Ostreococc... [more]
gi|145347359|ref|XP_001418136.1|2.353e-4955.15predicted protein [Ostreococcus lucimarinus CCE990... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3820rna3820Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications