rna382, rna382 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna382
Unique Name	rna382
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2416
Alignment location	CM002455.1:933870..936128 +

Link to JBrowse

Properties


Property Name	Value
Product	p21-activated protein kinase
Orig transcript id	gnl\|cribi\|Naga_100003g104.1738.mrna
Orig protein id	gnl\|cribi\|Naga_100003g104.1738
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:933870..936128 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g104	gene368	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna382	rna382-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30221.1	cds382	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:933870..936128+
coding sequence from alignment at CM002455.1:933870..936128+

mRNA sequence

>rna382 ID=rna382|Name=rna382|organism=Nannochloropsis gaditana|type=mRNA|length=2416bp
GACTCACGGGGGCTAGGCACCGCCTCATCACAGGGTATACTGCACATCGC
CTGGGCCAGGATCGCGCGCGACCGATCTCTTTTAGGATAAGTGCTCGCTT
GAAAGGCATGGCTTCTTCGTCGTCACCTCCCGTCCTCGCCATATTCTTCC
TGGTTGCCCTAACTTTGAATCAGGTCACCGCGCAAGTTGATTCATTCTTT
TCAAAGGCAGATTTTGAACGCTATCATGGTATTGCGAAAGCCGCACTCGA
GAGCAGGAGTCCTGAAACTGTTTTCTTCGGAACTAAGTTGTCCAAGGCTC
TCGGTGGGGACATCAGCTCTGTATGCACCTCGGCCGTGGGACTTATATCG
GACAATCCGGACGATCTAGAGACAGTGGCTTACGGAATGGGCGCGCTGAA
GGAAGCAAGCTGCGAAGTTTCTCTGGGTGCAGCAGAAACACGAGCAATGA
AGACGTTGAAATCCGGTTGGGGCGCCGAGGGCGGATCCTTTCGATGCAAG
CGCTTGACCTTACTGGCAGACTTGGCGTTGGGAGGAGGGAAGATTTTGGA
GAACGTGGAGACAGCCGTTAAGAATATCAACAAGCACCGCTCTGAGGACG
GATCCGTGCTATCCTTACCTGAAGGTATGTCTGATGAGAGCACAGATGGC
ACTTTCCAGCTTCTTGAGATTATTGCAGCCACGAAAGTAACATCGAAGGG
TATCAAGAAGACGCTGGAGCGGGCAGCAGATTTGCTACCGGGAGCCGAAG
GCAGCGACGGCGAGGTGGACGCCGGCGCGGATGCCACCTTGCTCTCAGCG
CTCGCCACGGCGGTTGCCGATGCAGGCGGTCCGGGTTTGAGCGTGACGCC
TGCACAGGGAGAGGCTCTGGCTCGAATTTTGCTGAAAATGAAGGGGACGG
CGTCGGCGAAAGGCGCGTACAAGGTGTTCGCGGCGCTGCGCACACTCGCG
ACGAAATTCCCTGACGCCGCGCCAGAGGCCCTGGTGCTGGCCACGCCTGT
CATTGAGGAGGGAGCCGTGTTCCGAGTAGAGTGTCGCAACATATTGGGCG
GTGAGATCTCTGGGCGGTCTGGAGGAGTCGAGTTAGAGAAAGTGGTTGCG
CTGGGGCAGGCGGCGGACTCGGTGACTCCTCCAAGGCTCGAAGGCTCAGG
TGGCGCATTTGAAGCTACCTTTACCGGCTCCCGCGTGGGTGTGTACGAGC
TTTCGCTGAAAGTTGGGGGGAAGGATGCTGTGAAGCGCTTTTTGGTGGTT
CAGGCTGCGGCCAGCCTCATGAATATCGAGGTCGGCGTCTCCCCTTCTCG
CGCCCACCTTGACGGAAAGCTCTATCAGGTCCCCTTGCGCGGAGGACAAG
TCAAGGCTTCGGCCTTGGAGGGCGAATACGTCTCAGTCTCTTTTACTGTT
GCTGCTGCTGCGATACCGCAGCAAGCGTTTTTCAAATTCACGAACTTGGC
GACTAACAGCGAGATCCTGTTTGCGGCCAAACGCAGCGGCATCCGGTCTG
GCGCCGGGTCCTTCGTCGCAGTGGTCAGCCTGGCGGACGAGGTACAAGCT
GCCTTTGGGCATCGTTCAGGCGAGTACCAGCTCTCCCTTGTTGTTGGAGA
CGTGGGTTTTGACAAGCCATTGGAACAAGACCTGGGGGCGCTCAACCTGA
CCTTCTCCTCCAAGCCCCCTGTCTCGCACGCTCTTTATCGCAAGCCCCTC
CTCTGGGAGTCGGACACGGCACTCAGCCCTCTGCCAGAAATTCACCACCA
GTTTCGCCAGCCCGAGCGCCGGCCTAACGCGGTACTACCAGCAGTCTTCA
CCTTTCTTGTCGCTTTGGTCCTGACCGCTTTTTTCCGCTATCTGCCACGC
GTAGGGGCGAACCTGAACGGCTTTCCCTCACGGGGTATGGCTCTCTTCTG
GAACATCGCCTGGCTGGTTTGCCTTCTCATGGTGATTTTCCTCTTCACTG
CTTATTGGATGTTCCTCAAAGGCATGACAACGCTGAAGCTCTTATTCCCT
CTAGGTGTTACGACACTGCTGGTGGGTCATCGCGCGTTTGTGGGGAAAGT
GAAGGCAGGGAGGTCGTAAGATTTTGCTGCTACCACGTCGGAGGAGGGCG
GATCATCCAATTAGAATAATAACATGGGTTACTTGAGTTGTTGGAACGAG
TACCCTTTCGCAATGAATAGCAAGGACTGAAAAGAAGGGGGGGTGGTAGG
AAAGGTTCACGAGGAAAAAATAAAGCCTCCACCTTCGCCTCATTTTGTTG
CCGCACAGCATCGAAGACACTAATGCTTTCTTTCCTCAGCAAGGCAGCCC
TTTGAAGCAGACCATAAGCCTCAAAGCAGAGGGCCCGCATTTGAAAAAAA
CTTTGACTTGCGAGAAGGGAAGCCTTGTCTATAATTCACACTTTCTCTTG
CTACTGTGTCTACATG

protein sequence of rna382

>rna382-protein ID=rna382-protein|Name=rna382|organism=Nannochloropsis gaditana|type=polypeptide|length=579bp
MSNTSSDYPVRQQAHAMGALKPRMPEEMMGTLSLEEIPSPPPDNNGGVPH
AGSDSLTGEGEPAADTVGTPKTVITAPITSTDSFRLSASESELAGDRSNE
PARGTSVSKPMQVKHHIHVSFDPTSGAFKGLPPEWGKHLPVGVSKEEANV
TATDRHVAPPKPTAEVKKTLNPLRKFTWWSSGSKGGGDRNPPLAGTVIGA
PFNVQHTTHVRPDPTSSTGFSGLPPAWRAVLKVSGITKQEAVDHPQAVLA
ALNFHMQGPTHTRGPLPSRAAVEQAMAKALRIVKDDPRQYFSDLKRLGQG
ASGTVYAATDRRTGERRALKIAPVSELADLTNEIGLQSMSDHPNVVRIYE
AFVTTSEVCIVMELMLGGSLTDVLGKHVVDFKEPHIAYVAKAVLSALAYM
HSSYRMHRDIKSDNVLVDKEGQVKIADFGFAIALTKETSKRHSVVGTPYW
MAPELIRGTDYDSKVDVWSLGITCIEMAEGEPPHLHEPPLRALLMISISG
SPALKDPSRWSSQFLHFLAQSTSVDAEARPTAEQLLNHPFLTMASTQEEY
GAFVRAQLEARRRRRQQQAQAQAAHNKGR

mRNA from alignment at CM002455.1:933870..936128+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna382 ID=rna382|Name=rna382|organism=Nannochloropsis gaditana|type=mRNA|length=2259bp|location=Sequence derived from alignment at CM002455.1:933870..936128+ (Nannochloropsis gaditana)
GACTCTCACGCGATTCGATGCCGCtgacacctccctccttcattcgCCAT
CCTGCACCTGTCCCATATGCACGCACAGATAGACAAGGAACGGGCCGACG
GGGGTCCGCACCGACCTTTGGAGCCCTTCACCGTGTtctgttcctccctc
ttccaggagAGGATCGAATCGGAATCTCCTTCCTTACAGCGCCGCTCACA
CTATGTCGAACACCTCTTCGGATTATCCAGTGCGACAGCAAGCTCATGCA
ATGGGAGCTCTGAAGCCCCGTATGCCCGAAGAAATGATGGGTACTCTCTC
TTTAGAAGAGATTCcgagccctcctccagacaACAACGGAGGCGTACCAC
ACGCAGGCTCTGACAGCTTAACGGGTGAGGGGGAACCCGCTGCTGATACA
GTTGGTACACCCAAGACAGTCATTACAGCTCCTATCACTAGTACGGACTC
TTTTCGGCTCAGCGCTTCCGAGTCCGAGCTCGCAGGCGATCGAAGCAACG
AGCCCGCCCGAGGCACCTCTGTGTCGAAGCCGATGCAGGTGAAGCACCAC
ATCCACGTATCATTTGACCCCACCAGTGGGGCGTTCAAGGGCCTGCCTCC
GGAGTGGGGAAAGCACTTGCCAGTTGGTGtctccaaggaggaggcgaacg
TCACGGCAACAGACAGGCACGTGGCCCCCCCAAAACCCACAGCAGAAGTG
AAGAAGACTTTGAACCCTCTGCGCAAATTCACCTGGTGGTCCAGTGGGAg
caaaggaggtggagaccGGAATCCTCCCCTGGCAGGCACCGTCATTGGCG
CCCCTTTCAATGTCCAACACACCACTCACGTCCGCCCAGACCCCACGTCT
TCAACGGGGTTCAGCGGACTCCCTCCGGCGTGGCGTGCCGTCCTCAAGGT
TTCCGGTATCACCAAGCAAGAAGCCGTGGACCACCCACAGGCCGTCTTGG
CAGCTTTGAATTTCCACATGCAGGGTCCTACGCACACCCGCGGTCCCCTG
CCCTCACGCGCGGCGGTGGAGCAAGCCATGGCAAAAGCCCTGCGGATTGT
GAAGGATGACCCCCGCCAGTACTTCAGCGACTTGAAGCGCTTGGGCCAAG
GCGCTTCGGGCACCGTATATGCAGCCACCGATCGACGCACTGGGGAGCGG
CGGGCGCTAAAAATAGCCCCAGTTAGCGAGCTCGCCGATCTGACGAACGA
GATCGGCCTGCAGAGCATGAGCGATCACCCGAACGTCGTCCGCATCTACG
AGGCTTTCGTCACTACCTCCGAGGTCTGTATCGTCATGGAGCTGATGCTC
GGAGGGTCTTTGACAGACGTCTTGGGGAAGCACGTGGTGGACTTCAAAGA
GCCGCACATTGCCTATGTCGCCAAGGCAGTGCTCTCGGCCCTGGCCTACA
TGCACTCCTCCTACCGCATGCATCGTGACATCAAGAGCGATAACGTactg
gtggacaaggaggggcaggtaAAGATAGCCGACTTCGGCTTTGCTATCGC
ACTGACGAAGGAGACGTCCAAACGGCATTCCGTAGTTGGCACGCCCTACT
GGATGGCGCCTGAGCTTATCCGGGGCACGGACTACGACTCCAAGGTGGAC
GTGTGGTCCTTGGGTATCACCTGTATTgagatggcggagggcgaACCTCC
TCATCTGCATGagccccccctccgcgcGCTCCTCATGATCAGCATCTCCG
GCTCTCCCGCGCTCAAGGATCCGTCCCGATGGTCCTCCCAGTTTCTCCAC
TTCCTAGCGCAAAGCACGTCAGTGGATGCGGAAGCACGGCCTACGGCGGA
GCAACTTCTCAACCATCCGTTTTTGACGATGGCTTCTACGCAAGAGGAGT
ACGGGGCTTTCGTCCGAGCTCAGCTTGAGGCCCGACGTCGTCGGAGGCAA
CAGCAAGCGCAGGCACAGGCTGCCCACAACAAAGGGAGGTAGTATCAAAA
CAGGggcaaaaagaaagcaaagtGTGCcatcgggagggaggaatgataGT
GACTTCACAACAAGTCATGTGAAAGCTGCGAAATACGTCGCGGGATGTGG
GACTCTCCTCCACACGCAAGTATTTGCGATACCAGAATTATGTGATGGGA
ATATTTCGTGCGATGCAACTATTTGCTACCATTTTTTGCATTCAGAGAAC
AGATGCACATCCGCAATGCTCAAGGCACATACACTTAAAGTACCCACAAG
CCCCAAAAAAACGTGTACGTCTGTGTGCGAACTTCGTTGCATGCTTCGTT
TAAATCTTC

Coding sequence (CDS) from alignment at CM002455.1:933870..936128+

>rna382 ID=rna382|Name=rna382|organism=Nannochloropsis gaditana|type=CDS|length=1740bp|location=Sequence derived from alignment at CM002455.1:933870..936128+ (Nannochloropsis gaditana)
ATGTCGAACACCTCTTCGGATTATCCAGTGCGACAGCAAGCTCATGCAAT
GGGAGCTCTGAAGCCCCGTATGCCCGAAGAAATGATGGGTACTCTCTCTT
TAGAAGAGATTCcgagccctcctccagacaACAACGGAGGCGTACCACAC
GCAGGCTCTGACAGCTTAACGGGTGAGGGGGAACCCGCTGCTGATACAGT
TGGTACACCCAAGACAGTCATTACAGCTCCTATCACTAGTACGGACTCTT
TTCGGCTCAGCGCTTCCGAGTCCGAGCTCGCAGGCGATCGAAGCAACGAG
CCCGCCCGAGGCACCTCTGTGTCGAAGCCGATGCAGGTGAAGCACCACAT
CCACGTATCATTTGACCCCACCAGTGGGGCGTTCAAGGGCCTGCCTCCGG
AGTGGGGAAAGCACTTGCCAGTTGGTGtctccaaggaggaggcgaacgTC
ACGGCAACAGACAGGCACGTGGCCCCCCCAAAACCCACAGCAGAAGTGAA
GAAGACTTTGAACCCTCTGCGCAAATTCACCTGGTGGTCCAGTGGGAgca
aaggaggtggagaccGGAATCCTCCCCTGGCAGGCACCGTCATTGGCGCC
CCTTTCAATGTCCAACACACCACTCACGTCCGCCCAGACCCCACGTCTTC
AACGGGGTTCAGCGGACTCCCTCCGGCGTGGCGTGCCGTCCTCAAGGTTT
CCGGTATCACCAAGCAAGAAGCCGTGGACCACCCACAGGCCGTCTTGGCA
GCTTTGAATTTCCACATGCAGGGTCCTACGCACACCCGCGGTCCCCTGCC
CTCACGCGCGGCGGTGGAGCAAGCCATGGCAAAAGCCCTGCGGATTGTGA
AGGATGACCCCCGCCAGTACTTCAGCGACTTGAAGCGCTTGGGCCAAGGC
GCTTCGGGCACCGTATATGCAGCCACCGATCGACGCACTGGGGAGCGGCG
GGCGCTAAAAATAGCCCCAGTTAGCGAGCTCGCCGATCTGACGAACGAGA
TCGGCCTGCAGAGCATGAGCGATCACCCGAACGTCGTCCGCATCTACGAG
GCTTTCGTCACTACCTCCGAGGTCTGTATCGTCATGGAGCTGATGCTCGG
AGGGTCTTTGACAGACGTCTTGGGGAAGCACGTGGTGGACTTCAAAGAGC
CGCACATTGCCTATGTCGCCAAGGCAGTGCTCTCGGCCCTGGCCTACATG
CACTCCTCCTACCGCATGCATCGTGACATCAAGAGCGATAACGTactggt
ggacaaggaggggcaggtaAAGATAGCCGACTTCGGCTTTGCTATCGCAC
TGACGAAGGAGACGTCCAAACGGCATTCCGTAGTTGGCACGCCCTACTGG
ATGGCGCCTGAGCTTATCCGGGGCACGGACTACGACTCCAAGGTGGACGT
GTGGTCCTTGGGTATCACCTGTATTgagatggcggagggcgaACCTCCTC
ATCTGCATGagccccccctccgcgcGCTCCTCATGATCAGCATCTCCGGC
TCTCCCGCGCTCAAGGATCCGTCCCGATGGTCCTCCCAGTTTCTCCACTT
CCTAGCGCAAAGCACGTCAGTGGATGCGGAAGCACGGCCTACGGCGGAGC
AACTTCTCAACCATCCGTTTTTGACGATGGCTTCTACGCAAGAGGAGTAC
GGGGCTTTCGTCCGAGCTCAGCTTGAGGCCCGACGTCGTCGGAGGCAACA
GCAAGCGCAGGCACAGGCTGCCCACAACAAAGGGAGGTAG

Synonyms

Publications