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Properties
| Property Name | Value |
|---|
| Product | general transcription factor iih |
| Orig transcript id | gnl|cribi|Naga_100097g3.3746.mrna |
| Orig protein id | gnl|cribi|Naga_100097g3.3746 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:124532..126470 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3817 ID=rna3817|Name=rna3817|organism=Nannochloropsis gaditana|type=mRNA|length=1745bp
CACCTCGCTCATCACCGCCATAATTCACACATAGCACTCGGGAAAAGGGT
CCCTACACCCGTGTCCGCGCGCGTCATGTCTTCAAAGGGACGATGAGCAT
GGGCATGAGTGGGCTTCGTGGGTTTCGATTTGAGCAAGGGCTGCTTTGCG
ACGATAGCCTTTCTTGGTGCCTTCTATTTATTGACTTTCTCGCAACTTCT
CGTCTCCGAATCGATGAAAAAACGATTTAACCTGCCCACAACACTCTCCA
CGAAGCCAAGCGCAGCGGCATGGTCGACGCGGGCCTGGAAGCCGAAGAGC
CAAACATTTTGGTCATCGTTATCGATGCCGATCCAGCAAGCTGGCAGCGG
ATACACTCAGCAGGCGAACTCGCGCGCCCACAGGATAGGCCTTCCTCAGA
AGCCCCACAGATATTCATGACCTTTCCCCACCTTCTCGACACTCTTATGG
TCTTTATCGATGCCTACCTGCTAACGCACCGGGCGAATCGCGTGGCAGTG
GTCGCCGCTTTACACGACAAGAGCGACTTCCTCTACCCGCCTCCCGTCCC
AGCTCCGCCGCCGTCAGACCCCCCCAAGTCCGAAGGGCCAACAAAAGCTC
CCGTCATCAAGCTCGAAAAGATGGTCTATGAGGCTGCGTGCGACCAGCAT
GCAACCGTCGCAGCAGTCGAAGGGGGGCAAGACGGCGTGGATGCCCTCAA
GACGAACGGAGCGACCTCAAAAGGCCCCCCCCTGGCCCCTGTGTCCCCGC
CCTCGGGAGGGAGTGAATCAGAACGCGTCAGCCACGCGGTCACCCGCGGT
CTGCAACGCTTGCTCGCCCCCACATCTGCCGTTGCCTTGGACGGTCCTGA
GGTCTCGGGGCCAGGAGCTCGTCCTGAGGTCTCGGGGCCAGGAGCTCGGC
CCTCCCTCCGACCCGTATCCCGGACCTCCCAAGCGCTCTCCAAAAGCCTG
TGCTACATCCAACGGGCCCTTCGGGAATCACCGTCCCTGTCCGCCCGCAT
GCTCGTACTCCAGGCCTCCGCGGACGCGCACGGGGACTACAACGCCTTCA
TGAACTGCACCTTCTCGGCCCAGCGGTCCTCTGTGCCCATCGACGCCGCC
GTCTTTTCCTCCCCGGCCTCGGTCCACAAAGACTCGTCTTTCCTTCAGCA
GGCCTCGTACATCACGGGGGGTGTCTACGTCCGACCCGATCGACCGGAGG
CCTTGCTGCAATATTTCCTCCATCTCTTCCTCCCCTCCCATCATCTCCGC
CAAGCACTGCGACTTCCCAAGCAGGAATCTGTTGACTTCCGTGCAGCGTG
TTTCTGCCATCGGAAAGCAGTGGAGCAAGCCTACGTGTGCTCGGTATGTT
TGAGTATTTTCTGTGCGTTTGCCCCGGAATGTGCCACCTGTGGCACACCG
GCCCGTCCCCTGAAAGGTAGTGGAAAAGGGGCAGGGAGACGGTCGCGGGA
CTGACGGAGGTCAAGGAGGGGAAGGGAAAGGTGCAGAGAGACGGTGTCGT
GTCAACTCATAATATGTACAGAGGCGAAACTAATTAACAGGGGCAAAAGC
TTGTTTCTTCCTTCAAAAACAAATTAAAGAAAATCAACTATTCAGCTTAA
ACAAGGCACCGAGGCTGTAATAGTGTAATAGATAGTCAGGAAATTGGCTG
ATTAATTCCGATATGCCGTGGATGAGATGCTCGACGTCGACTTTACATGA
GATGAGCATACCGGCCTAGGTCCCGAACCCGAGAAAATGGACACA back to topprotein sequence of rna3817 >rna3817-protein ID=rna3817-protein|Name=rna3817|organism=Nannochloropsis gaditana|type=polypeptide|length=393bp
MVDAGLEAEEPNILVIVIDADPASWQRIHSGELARPQDRPSSEAPQIFMT
FPHLLDTLMVFIDAYLLTHRANRVAVVAALHDKSDFLYPPPVPAPPPSDP
PKSEGPTKAPVIKLEKMVYEAACDQHATVAAVEGGQDGVDALKTNGATSK
GPPLAPVSPPSGGSESERVSHAVTRGLQRLLAPTSAVALDGPEVSGPGAR
PEVSGPGARPSLRPVSRTSQALSKSLCYIQRALRESPSLSARMLVLQASA
DAHGDYNAFMNCTFSAQRSSVPIDAAVFSSPASVHKDSSFLQQASYITGG
VYVRPDRPEALLQYFLHLFLPSHHLRQALRLPKQESVDFRAACFCHRKAV
EQAYVCSVCLSIFCAFAPECATCGTPARPLKGSGKGAGRRSRD back to topmRNA from alignment at CM002462.1:124532..126470+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3817 ID=rna3817|Name=rna3817|organism=Nannochloropsis gaditana|type=mRNA|length=1939bp|location=Sequence derived from alignment at CM002462.1:124532..126470+ (Nannochloropsis gaditana)
CACCTCGCTCATCACCGCCATAATTCACACATAGCACTCGGGAAAAGGGT
CCCTACACCCGTGTCCGCGCGCGTCATGTCTTCAAAGGGACGATGAGCAT
GGGCATGAGTGGGCTTCGTGGGTTTCGATTTGAGCAAGGGCTGCTTTGCG
ACGATAGCCTTTCTTGGTGCCTTCTATTTATTGACTTTCTCGCAACTTCT
CGTCTCCGAATCGATGAAAAAACGATTTAACCTGCCCACAACACTCTCCA
CGAAGCCAAGCGCAGCGGCATGGTCGACGCGGGCCTGGAAGCCGAAGAGC
CAAACATTTTGGTCATCGTTATCGATGCCGATCCAGCAAGCTGGCAGCGG
ATACACTGTACGTgactacctcctctccctcgacatAATACTTCAGGTCT
TCGTGGTTGTCCTTCCCGCTTTTTTTACCGAATTATTTCCTTTCCCGAGA
CGTTCAGGCCATGTTTCAtgccgtcttcttccttggtTCCGGATCGATTG
CTTGTCGAACACGGTTGTTTTTAACCTTACGTCGTTCCTTGCGTACCATA
GCAGCAGGCGAACTCGCGCGCCCACAGGATAGGCCTTCCTCAGAAGCCCC
ACAGATATTCATGacctttccccaccttctcgaCACTCTTATGGTCTTTA
TCGATGCCTACCTGCTAACGCACCGGGCGAATCGCGTGGCAGTGGTCGCC
GCTTTACACGACAAGAGCGACTTCCTCTACCCGCCTCCCGTCCCAGCTCC
GCCGCCGTCAGACCCCCCCAAGTCCGAAGGGCCAACAAAAGCTCCCGTCA
TCAAGCTCGAAAAGATGGTCTATGAGGCTGCGTGCGACCAGCATGCAACC
GTCGCAGCAGTCGAAGGGGGGCAAGACGGCGTGGATGCCCTCAAGACGAA
CGGAGCGACCTCAAAAggcccccccctggcccctgtgtccccgccctcgg
gagggagtgaaTCAGAACGCGTCAGCCACGCGGTCACCCGCGGTCTGCAA
CGCTTGCTCGCCCCCACATCTGCCGTTGCCTTGGACGGTCCTGAGGTCTC
GGGGCCAGGAGCTCGTCCTGAGGTCTCGGGGCCAGGAgctcggccctccc
tccgacccgtATCCCGGACCTCCCAAGCGCTCTCCAAAAGCCTGTGCTAC
ATCCAACGGGCCCTTCGGGAATCACCGTCCCTGTCCGCCCGCATGCTCGT
ACTCCAGGCCTCCGCGGACGCGCACGGGGACTACAACGCCTTCATGAACT
GCACCTTCTCGGCCCAGCGGTCCTCTGTGCCCATCGACGCcgccgtcttt
tcctccccggcctcggtccacaaagacTCGTCTTTCCTTCAGCAGGCCTC
GTACATCACGGGGGGTGTCTACGTCCGACCCGATCGACCGGAGGCCTTGC
TGCAAtatttcctccatctcttcctcccctcccatcatcTCCGCCAAGCA
CTGCGACTTCCCAAGCAGGAATCTGTTGACTTCCGTGCAGCGTGTTTCTG
CCATCGGAAAGCAGTGGAGCAAGCCTACGTGTGCTCGGTATGTTTGAGTA
TTTTCTGTGCGTTTGCCCCGGAATGTGCCACCTGTGGCACACCGGCCCGT
CCCCTGAAAGGTAGTggaaaaggggcagggagacgGTCGCGGGACTGAcg
gaggtcaaggaggggaagggaaaggtgCAGAGAGACGGTGTCGTGTCAAC
TCATAATATGTACAGAGGCGAAACTAATTAACAGGGGCAAAAGCTTGTTT
CTTCCTTCAAAAACAAATTAAAGAAAATCAACTATTCAGCTTAAACAAGG
CACCGAGGCTGTAATAGTGTAATAGATAGTCAGGAAATTGGCTGATTAAT
TCCGATATGCCGTGGATGAGATGCTCGACGTCGACTTTACATGAGATGAG
CATACCGGCCTAGGTCCCGAACCCGAGAAAATGGACACA back to topCoding sequence (CDS) from alignment at CM002462.1:124532..126470+ >rna3817 ID=rna3817|Name=rna3817|organism=Nannochloropsis gaditana|type=CDS|length=2364bp|location=Sequence derived from alignment at CM002462.1:124532..126470+ (Nannochloropsis gaditana)
ATGGTCGACGCGGGCCTGGAAGCCGAAGAGCCAAACATTTTGGTCATCGT
TATCGATGCCGATCCAGCAAGCTGGCAGCGGATACACTCAGGCGAACTCG
CGCGCCCACAGGATAGGCCTTCCTCAGAAGCCCCACAGATATTCATGacc
tttccccaccttctcgaCACTCTTATGGTCTTTATCGATGCCTACCTGCT
AACGCACCGGGCGAATCGCGTGGCAGTGGTCGCCGCTTTACACGACAAGA
GCGACTTCCTCTACCCGCCTCCCGTCCCAGCTCCGCCGCCGTCAGACCCC
CCCAAGTCCGAAGGGCCAACAAAAGCTCCCGTCATCAAGCTCGAAAAGAT
GGTCTATGAGGCTGCGTGCGACCAGCATGCAACCGTCGCAGCAGTCGAAG
GGGGGCAAGACGGCGTGGATGCCCTCAAGACGAACGGAGCGACCTCAAAA
ggcccccccctggcccctgtgtccccgccctcgggagggagtgaaTCAGA
ACGCGTCAGCCACGCGGTCACCCGCGGTCTGCAACGCTTGCTCGCCCCCA
CATCTGCCGTTGCCTTGGACGGTCCTGAGGTCTCGGGGCCAGGAGCTCGT
CCTGAGGTCTCGGGGCCAGGAgctcggccctccctccgacccgtATCCCG
GACCTCCCAAGCGCTCTCCAAAAGCCTGTGCTACATCCAACGGGCCCTTC
GGGAATCACCGTCCCTGTCCGCCCGCATGCTCGTACTCCAGGCCTCCGCG
GACGCGCACGGGGACTACAACGCCTTCATGAACTGCACCTTCTCGGCCCA
GCGGTCCTCTGTGCCCATCGACGCcgccgtcttttcctccccggcctcgg
tccacaaagacTCGTCTTTCCTTCAGCAGGCCTCGTACATCACGGGGGGT
GTCTACGTCCGACCCGATCGACCGGAGGCCTTGCTGCAAtatttcctcca
tctcttcctcccctcccatcatcTCCGCCAAGCACTGCGACTTCCCAAGC
AGGAATCTGTTGACTTCCGTGCAGCGTGTTTCTGCCATCGGAAAGCAGTG
GAGCAAGCCTACGTGTGCTCGGTATGTTTGAGTATTTTCTGTGCGTTTGC
CCCGGAATGTGCCACCTGTGGCACACCGGCCCGTCCCCTGAAAGGTAGTg
gaaaaggggcagggagacgGTCGCGGGACTGAATGGTCGACGCGGGCCTG
GAAGCCGAAGAGCCAAACATTTTGGTCATCGTTATCGATGCCGATCCAGC
AAGCTGGCAGCGGATACACTCAGGCGAACTCGCGCGCCCACAGGATAGGC
CTTCCTCAGAAGCCCCACAGATATTCATGacctttccccaccttctcgaC
ACTCTTATGGTCTTTATCGATGCCTACCTGCTAACGCACCGGGCGAATCG
CGTGGCAGTGGTCGCCGCTTTACACGACAAGAGCGACTTCCTCTACCCGC
CTCCCGTCCCAGCTCCGCCGCCGTCAGACCCCCCCAAGTCCGAAGGGCCA
ACAAAAGCTCCCGTCATCAAGCTCGAAAAGATGGTCTATGAGGCTGCGTG
CGACCAGCATGCAACCGTCGCAGCAGTCGAAGGGGGGCAAGACGGCGTGG
ATGCCCTCAAGACGAACGGAGCGACCTCAAAAggcccccccctggcccct
gtgtccccgccctcgggagggagtgaaTCAGAACGCGTCAGCCACGCGGT
CACCCGCGGTCTGCAACGCTTGCTCGCCCCCACATCTGCCGTTGCCTTGG
ACGGTCCTGAGGTCTCGGGGCCAGGAGCTCGTCCTGAGGTCTCGGGGCCA
GGAgctcggccctccctccgacccgtATCCCGGACCTCCCAAGCGCTCTC
CAAAAGCCTGTGCTACATCCAACGGGCCCTTCGGGAATCACCGTCCCTGT
CCGCCCGCATGCTCGTACTCCAGGCCTCCGCGGACGCGCACGGGGACTAC
AACGCCTTCATGAACTGCACCTTCTCGGCCCAGCGGTCCTCTGTGCCCAT
CGACGCcgccgtcttttcctccccggcctcggtccacaaagacTCGTCTT
TCCTTCAGCAGGCCTCGTACATCACGGGGGGTGTCTACGTCCGACCCGAT
CGACCGGAGGCCTTGCTGCAAtatttcctccatctcttcctcccctccca
tcatcTCCGCCAAGCACTGCGACTTCCCAAGCAGGAATCTGTTGACTTCC
GTGCAGCGTGTTTCTGCCATCGGAAAGCAGTGGAGCAAGCCTACGTGTGC
TCGGTATGTTTGAGTATTTTCTGTGCGTTTGCCCCGGAATGTGCCACCTG
TGGCACACCGGCCCGTCCCCTGAAAGGTAGTggaaaaggggcagggagac
gGTCGCGGGACTGA back to top
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