EWM26855.1, cds3808 (CDS) Nannochloropsis gaditana

Overview
NameEWM26855.1
Unique Namecds3808
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:124801..124888 +
Alignment locationCM002462.1:125086..126179 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26855.1
Productgeneral transcription factor iih
Orig transcript idgnl|cribi|Naga_100097g3.3746.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:124801..124888 +
CM002462.1supercontigCM002462.1:125086..126179 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
GO:0006289nucleotide-excision repair
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000439transcription factor TFIIH core complex
Vocabulary: INTERPRO
TermDefinition
IPR004600TFIIH_Tfb4/p34
Homology
BLAST of EWM26855.1 vs. NCBI_GenBank
Match: gi|585108950|gb|EWM26855.1| (general transcription factor iih [Nannochloropsis gaditana])

HSP 1 Score: 796.193 bits (2055), Expect = 0.000e+0
Identity = 393/393 (100.00%), Postives = 393/393 (100.00%), Query Frame = 0
Query:    1 MVDAGLEAEEPNILVIVIDADPASWQRIHSGELARPQDRPSSEAPQIFMTFPHLLDTLMVFIDAYLLTHRANRVAVVAALHDKSDFLYPPPVPAPPPSDPPKSEGPTKAPVIKLEKMVYEAACDQHATVAAVEGGQDGVDALKTNGATSKGPPLAPVSPPSGGSESERVSHAVTRGLQRLLAPTSAVALDGPEVSGPGARPEVSGPGARPSLRPVSRTSQALSKSLCYIQRALRESPSLSARMLVLQASADAHGDYNAFMNCTFSAQRSSVPIDAAVFSSPASVHKDSSFLQQASYITGGVYVRPDRPEALLQYFLHLFLPSHHLRQALRLPKQESVDFRAACFCHRKAVEQAYVCSVCLSIFCAFAPECATCGTPARPLKGSGKGAGRRSRD 393
            MVDAGLEAEEPNILVIVIDADPASWQRIHSGELARPQDRPSSEAPQIFMTFPHLLDTLMVFIDAYLLTHRANRVAVVAALHDKSDFLYPPPVPAPPPSDPPKSEGPTKAPVIKLEKMVYEAACDQHATVAAVEGGQDGVDALKTNGATSKGPPLAPVSPPSGGSESERVSHAVTRGLQRLLAPTSAVALDGPEVSGPGARPEVSGPGARPSLRPVSRTSQALSKSLCYIQRALRESPSLSARMLVLQASADAHGDYNAFMNCTFSAQRSSVPIDAAVFSSPASVHKDSSFLQQASYITGGVYVRPDRPEALLQYFLHLFLPSHHLRQALRLPKQESVDFRAACFCHRKAVEQAYVCSVCLSIFCAFAPECATCGTPARPLKGSGKGAGRRSRD
Sbjct:    1 MVDAGLEAEEPNILVIVIDADPASWQRIHSGELARPQDRPSSEAPQIFMTFPHLLDTLMVFIDAYLLTHRANRVAVVAALHDKSDFLYPPPVPAPPPSDPPKSEGPTKAPVIKLEKMVYEAACDQHATVAAVEGGQDGVDALKTNGATSKGPPLAPVSPPSGGSESERVSHAVTRGLQRLLAPTSAVALDGPEVSGPGARPEVSGPGARPSLRPVSRTSQALSKSLCYIQRALRESPSLSARMLVLQASADAHGDYNAFMNCTFSAQRSSVPIDAAVFSSPASVHKDSSFLQQASYITGGVYVRPDRPEALLQYFLHLFLPSHHLRQALRLPKQESVDFRAACFCHRKAVEQAYVCSVCLSIFCAFAPECATCGTPARPLKGSGKGAGRRSRD 393          
BLAST of EWM26855.1 vs. NCBI_GenBank
Match: gi|585108949|gb|EWM26854.1| (general transcription factor iih [Nannochloropsis gaditana])

HSP 1 Score: 791.956 bits (2044), Expect = 0.000e+0
Identity = 393/394 (99.75%), Postives = 393/394 (99.75%), Query Frame = 0
Query:    1 MVDAGLEAEEPNILVIVIDADPASWQRIHS-GELARPQDRPSSEAPQIFMTFPHLLDTLMVFIDAYLLTHRANRVAVVAALHDKSDFLYPPPVPAPPPSDPPKSEGPTKAPVIKLEKMVYEAACDQHATVAAVEGGQDGVDALKTNGATSKGPPLAPVSPPSGGSESERVSHAVTRGLQRLLAPTSAVALDGPEVSGPGARPEVSGPGARPSLRPVSRTSQALSKSLCYIQRALRESPSLSARMLVLQASADAHGDYNAFMNCTFSAQRSSVPIDAAVFSSPASVHKDSSFLQQASYITGGVYVRPDRPEALLQYFLHLFLPSHHLRQALRLPKQESVDFRAACFCHRKAVEQAYVCSVCLSIFCAFAPECATCGTPARPLKGSGKGAGRRSRD 393
            MVDAGLEAEEPNILVIVIDADPASWQRIHS GELARPQDRPSSEAPQIFMTFPHLLDTLMVFIDAYLLTHRANRVAVVAALHDKSDFLYPPPVPAPPPSDPPKSEGPTKAPVIKLEKMVYEAACDQHATVAAVEGGQDGVDALKTNGATSKGPPLAPVSPPSGGSESERVSHAVTRGLQRLLAPTSAVALDGPEVSGPGARPEVSGPGARPSLRPVSRTSQALSKSLCYIQRALRESPSLSARMLVLQASADAHGDYNAFMNCTFSAQRSSVPIDAAVFSSPASVHKDSSFLQQASYITGGVYVRPDRPEALLQYFLHLFLPSHHLRQALRLPKQESVDFRAACFCHRKAVEQAYVCSVCLSIFCAFAPECATCGTPARPLKGSGKGAGRRSRD
Sbjct:    1 MVDAGLEAEEPNILVIVIDADPASWQRIHSAGELARPQDRPSSEAPQIFMTFPHLLDTLMVFIDAYLLTHRANRVAVVAALHDKSDFLYPPPVPAPPPSDPPKSEGPTKAPVIKLEKMVYEAACDQHATVAAVEGGQDGVDALKTNGATSKGPPLAPVSPPSGGSESERVSHAVTRGLQRLLAPTSAVALDGPEVSGPGARPEVSGPGARPSLRPVSRTSQALSKSLCYIQRALRESPSLSARMLVLQASADAHGDYNAFMNCTFSAQRSSVPIDAAVFSSPASVHKDSSFLQQASYITGGVYVRPDRPEALLQYFLHLFLPSHHLRQALRLPKQESVDFRAACFCHRKAVEQAYVCSVCLSIFCAFAPECATCGTPARPLKGSGKGAGRRSRD 394          
BLAST of EWM26855.1 vs. NCBI_GenBank
Match: gi|1069948697|ref|XP_018293465.1| (hypothetical protein PHYBLDRAFT_180792 [Phycomyces blakesleeanus NRRL 1555(-)] >gi|1026590953|gb|OAD75425.1| hypothetical protein PHYBLDRAFT_180792 [Phycomyces blakesleeanus NRRL 1555(-)])

HSP 1 Score: 192.971 bits (489), Expect = 5.973e-55
Identity = 122/377 (32.36%), Postives = 174/377 (46.15%), Query Frame = 0
Query:    1 MVDAGLEAEEPNILVIVIDADPASWQRIHSGELARPQDRPSSEAPQIFMTFPHLLDTLMVFIDAYLLTHRANRVAVVAALHDKSDFLYPPPVPAPPPSDPPKSEGPTKAPVIKLEKMVYEAACDQHATVAAVEGGQDGVDALKTNGATSKGPPLAPVSPPSGGSESERVSHAVTRGLQRLLAPTSAVALDGPEVSGPGARPEVSGPGARPSLRPVSRTSQALSKSLCYIQRALR--ESPSLSARMLVLQASADAHGDYNAFMNCTFSAQRSSVPIDAAVFSSPASVHKDSSFLQQASYITGGVYVRPDRPEALLQYFLHLFLPSHHLRQALRLPKQESVDFRAACFCHRKAVEQAYVCSVCLSIFCAFAPECATCGT 375
            M DA    ++ N+LV++ID +P  W                S    + ++    L  +++FI+A+L     N+V V+A+    S FLYP P                                    TV            +K+N  + +   + P          + V+  +   LQ L A T   +L      GPG    V+G               A S +LCYI R  +  E   +  R+L+L  S D+   Y   MNC FSAQ++S+P+D           ++++FLQQAS ITGGVYV+ D  +ALLQY +  FLP  + R  L LP Q+ VDFRAACFCH+K V+  YVCSVCLSIFC+++P C+TC T
Sbjct:    1 MKDASTSEDDSNLLVLIIDTNPFVWAE--------------SAKATVPLSLDDALRQILIFINAHLALKYNNKVTVIASHVGHSKFLYPLP---------------------------------NEETVQ-----------IKSNNGSRRNANMYP--------NFQFVTDQIVSSLQELFANTDPSSLQ----EGPGTSSMVTG---------------AFSMALCYIHRITKQDELGHIKPRILILSVSPDSASQYIPLMNCIFSAQKASIPVDVCKIYG-----EETAFLQQASNITGGVYVKVDNSQALLQYLMFAFLPERYARNYLNLPNQDQVDFRAACFCHKKIVDIGYVCSVCLSIFCSWSPVCSTCKT 287          
BLAST of EWM26855.1 vs. NCBI_GenBank
Match: gi|698780801|ref|XP_009823444.1| (hypothetical protein H257_01771 [Aphanomyces astaci] >gi|574121168|gb|ETV86645.1| hypothetical protein H257_01771 [Aphanomyces astaci])

HSP 1 Score: 176.792 bits (447), Expect = 3.580e-49
Identity = 84/166 (50.60%), Postives = 112/166 (67.47%), Query Frame = 0
Query:  219 SQALSKSLCYIQRALRESPSLSARMLVLQASADAHGDYNAFMNCTFSAQRSSVPIDAAVFSSPASVHKDSSFLQQASYITGGVYVRPDRPEALLQYFLHLFLPSHHLRQALRLPKQESVDFRAACFCHRKAVEQAYVCSVCLSIFCAFAPECATCG--TPARPLKG 382
            S  LS +LC+I RA+ ES  L  R+LV+  S D    Y + MNC FSAQ+  VPID+ V +S     + S+FLQQASY+TGG+Y +P  P+ L+QYFL ++L     RQ L+LP Q SVDFRA CFCH++ +  A+VC VCLS+FC F+P C+TCG  +  +PLK 
Sbjct:  112 SAGLSLALCFINRAMNESRELQPRILVVDGSPDFAEQYISIMNCIFSAQKKHVPIDSCVLAS-----EPSAFLQQASYLTGGIYFKPKEPQGLVQYFLSIWLADADTRQMLKLPTQASVDFRAMCFCHKQTISTAFVCPVCLSLFCEFSPVCSTCGIRSQIKPLKA 272          
BLAST of EWM26855.1 vs. NCBI_GenBank
Match: gi|566024931|gb|ETI47842.1| (hypothetical protein F443_07986 [Phytophthora parasitica P1569])

HSP 1 Score: 176.407 bits (446), Expect = 7.866e-49
Identity = 79/154 (51.30%), Postives = 108/154 (70.13%), Query Frame = 0
Query:  221 ALSKSLCYIQRALRESPSLSARMLVLQASADAHGDYNAFMNCTFSAQRSSVPIDAAVFSSPASVHKDSSFLQQASYITGGVYVRPDRPEALLQYFLHLFLPSHHLRQALRLPKQESVDFRAACFCHRKAVEQAYVCSVCLSIFCAFAPECATCG 374
            +LS+SLC+I RA+ E P L  R+LV+Q S D    Y A MN  FSAQ+ +V +DA + S+     + SSF+QQA+Y+TGG+Y +P+    LLQY + ++LP   +R+ L+LP Q+SVDFRA CFCHR+ +  AYVC VCLS+FC F P C+TCG
Sbjct:  125 SLSRSLCFINRAINEEPDLRPRILVIQKSPDVSEHYIAIMNGIFSAQKKNVAVDACILST-----EHSSFMQQAAYLTGGIYYKPNDHSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVISTAYVCPVCLSLFCEFRPICSTCG 273          
BLAST of EWM26855.1 vs. NCBI_GenBank
Match: gi|675191693|ref|XP_008904731.1| (hypothetical protein PPTG_10953 [Phytophthora parasitica INRA-310] >gi|567962303|gb|ETK87829.1| hypothetical protein L915_07812 [Phytophthora parasitica] >gi|567991032|gb|ETL41249.1| hypothetical protein L916_07742 [Phytophthora parasitica] >gi|568050703|gb|ETM47636.1| hypothetical protein L914_07705 [Phytophthora parasitica] >gi|568095526|gb|ETN10294.1| hypothetical protein PPTG_10953 [Phytophthora parasitica INRA-310] >gi|570328669|gb|ETO76617.1| hypothetical protein F444_08029 [Phytophthora parasitica P1976] >gi|570952413|gb|ETP17670.1| hypothetical protein F441_07955 [Phytophthora parasitica CJ01A1] >gi|570986802|gb|ETP45727.1| hypothetical protein F442_07922 [Phytophthora parasitica P10297])

HSP 1 Score: 176.407 bits (446), Expect = 8.565e-49
Identity = 79/154 (51.30%), Postives = 108/154 (70.13%), Query Frame = 0
Query:  221 ALSKSLCYIQRALRESPSLSARMLVLQASADAHGDYNAFMNCTFSAQRSSVPIDAAVFSSPASVHKDSSFLQQASYITGGVYVRPDRPEALLQYFLHLFLPSHHLRQALRLPKQESVDFRAACFCHRKAVEQAYVCSVCLSIFCAFAPECATCG 374
            +LS+SLC+I RA+ E P L  R+LV+Q S D    Y A MN  FSAQ+ +V +DA + S+     + SSF+QQA+Y+TGG+Y +P+    LLQY + ++LP   +R+ L+LP Q+SVDFRA CFCHR+ +  AYVC VCLS+FC F P C+TCG
Sbjct:  125 SLSRSLCFINRAINEEPDLRPRILVIQKSPDVSEHYIAIMNGIFSAQKKNVAVDACILST-----EHSSFMQQAAYLTGGIYYKPNDHSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVISTAYVCPVCLSLFCEFRPICSTCG 273          
BLAST of EWM26855.1 vs. NCBI_GenBank
Match: gi|301122235|ref|XP_002908844.1| (general transcription factor IIH subunit, putative [Phytophthora infestans T30-4] >gi|262099606|gb|EEY57658.1| general transcription factor IIH subunit, putative [Phytophthora infestans T30-4])

HSP 1 Score: 176.022 bits (445), Expect = 1.026e-48
Identity = 79/154 (51.30%), Postives = 108/154 (70.13%), Query Frame = 0
Query:  221 ALSKSLCYIQRALRESPSLSARMLVLQASADAHGDYNAFMNCTFSAQRSSVPIDAAVFSSPASVHKDSSFLQQASYITGGVYVRPDRPEALLQYFLHLFLPSHHLRQALRLPKQESVDFRAACFCHRKAVEQAYVCSVCLSIFCAFAPECATCG 374
            +LS+SLC+I RA+ E P L  R+LV+Q S D    Y A MN  FSAQ+ SV +DA + ++     + SSF+QQA+Y+TGG+Y +P+    LLQY + ++LP   +R+ L+LP Q+SVDFRA CFCHR+ +  AYVC VCLS+FC F P C+TCG
Sbjct:  125 SLSRSLCFINRAINEEPDLRPRILVIQKSPDVSEHYIAIMNGIFSAQKKSVAVDACILAT-----EHSSFMQQAAYLTGGIYYKPNDHSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVISTAYVCPVCLSLFCEFRPICSTCG 273          
BLAST of EWM26855.1 vs. NCBI_GenBank
Match: gi|970654046|gb|KUF92417.1| (Lysosomal beta glucosidase [Phytophthora nicotianae])

HSP 1 Score: 176.022 bits (445), Expect = 1.216e-48
Identity = 79/154 (51.30%), Postives = 108/154 (70.13%), Query Frame = 0
Query:  221 ALSKSLCYIQRALRESPSLSARMLVLQASADAHGDYNAFMNCTFSAQRSSVPIDAAVFSSPASVHKDSSFLQQASYITGGVYVRPDRPEALLQYFLHLFLPSHHLRQALRLPKQESVDFRAACFCHRKAVEQAYVCSVCLSIFCAFAPECATCG 374
            +LS+SLC+I RA+ E P L  R+LV+Q S D    Y A MN  FSAQ+ +V +DA + S+     + SSF+QQA+Y+TGG+Y +P+    LLQY + ++LP   +R+ L+LP Q+SVDFRA CFCHR+ +  AYVC VCLS+FC F P C+TCG
Sbjct:  125 SLSRSLCFINRAINEEPDLRPRILVIQKSPDLSEHYIAIMNGIFSAQKKNVAVDACILST-----EHSSFMQQAAYLTGGIYYKPNDHSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVISTAYVCPVCLSLFCEFRPICSTCG 273          
BLAST of EWM26855.1 vs. NCBI_GenBank
Match: gi|568020279|gb|ETL94412.1| (hypothetical protein L917_07627 [Phytophthora parasitica])

HSP 1 Score: 175.252 bits (443), Expect = 2.253e-48
Identity = 79/154 (51.30%), Postives = 107/154 (69.48%), Query Frame = 0
Query:  221 ALSKSLCYIQRALRESPSLSARMLVLQASADAHGDYNAFMNCTFSAQRSSVPIDAAVFSSPASVHKDSSFLQQASYITGGVYVRPDRPEALLQYFLHLFLPSHHLRQALRLPKQESVDFRAACFCHRKAVEQAYVCSVCLSIFCAFAPECATCG 374
            +LS+SLC+I RA+ E P L  R+LV+Q S D    Y A MN  FSAQ+ +V +DA + S      + SSF+QQA+Y+TGG+Y +P+    LLQY + ++LP   +R+ L+LP Q+SVDFRA CFCHR+ +  AYVC VCLS+FC F P C+TCG
Sbjct:  125 SLSRSLCFINRAINEEPDLRPRILVIQKSPDVSEHYIAIMNGIFSAQKKNVAVDACILSM-----EHSSFMQQAAYLTGGIYYKPNDHSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVISTAYVCPVCLSLFCEFRPICSTCG 273          
BLAST of EWM26855.1 vs. NCBI_GenBank
Match: gi|695427967|ref|XP_009529831.1| (hypothetical protein PHYSODRAFT_508027 [Phytophthora sojae] >gi|348676264|gb|EGZ16082.1| hypothetical protein PHYSODRAFT_508027 [Phytophthora sojae])

HSP 1 Score: 174.481 bits (441), Expect = 4.393e-48
Identity = 78/154 (50.65%), Postives = 108/154 (70.13%), Query Frame = 0
Query:  221 ALSKSLCYIQRALRESPSLSARMLVLQASADAHGDYNAFMNCTFSAQRSSVPIDAAVFSSPASVHKDSSFLQQASYITGGVYVRPDRPEALLQYFLHLFLPSHHLRQALRLPKQESVDFRAACFCHRKAVEQAYVCSVCLSIFCAFAPECATCG 374
            +LS++LC+I RA+ E P L  R+LV+Q S D    Y A MN  FSAQ+ SV +DA + +     ++ SSF+QQA+Y+TGG+Y +P+    LLQY + ++LP   +R+ L+LP Q+SVDFRA CFCHR+ +  AYVC VCLS+FC F P C+TCG
Sbjct:  130 SLSRALCFINRAINEEPDLRPRILVVQKSPDVSEHYIAIMNGIFSAQKKSVAVDACILA-----NEHSSFMQQAAYLTGGIYYKPNDHSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVISTAYVCPVCLSLFCEFRPICSTCG 278          
The following BLAST results are available for this feature:
BLAST of EWM26855.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108950|gb|EWM26855.1|0.000e+0100.00general transcription factor iih [Nannochloropsis ... [more]
gi|585108949|gb|EWM26854.1|0.000e+099.75general transcription factor iih [Nannochloropsis ... [more]
gi|1069948697|ref|XP_018293465.1|5.973e-5532.36hypothetical protein PHYBLDRAFT_180792 [Phycomyces... [more]
gi|698780801|ref|XP_009823444.1|3.580e-4950.60hypothetical protein H257_01771 [Aphanomyces astac... [more]
gi|566024931|gb|ETI47842.1|7.866e-4951.30hypothetical protein F443_07986 [Phytophthora para... [more]
gi|675191693|ref|XP_008904731.1|8.565e-4951.30hypothetical protein PPTG_10953 [Phytophthora para... [more]
gi|301122235|ref|XP_002908844.1|1.026e-4851.30general transcription factor IIH subunit, putative... [more]
gi|970654046|gb|KUF92417.1|1.216e-4851.30Lysosomal beta glucosidase [Phytophthora nicotiana... [more]
gi|568020279|gb|ETL94412.1|2.253e-4851.30hypothetical protein L917_07627 [Phytophthora para... [more]
gi|695427967|ref|XP_009529831.1|4.393e-4850.65hypothetical protein PHYSODRAFT_508027 [Phytophtho... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3817rna3817Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications