EWM26855.1, cds3808 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26855.1 vs. NCBI_GenBank
Match: gi|585108950|gb|EWM26855.1| (general transcription factor iih [Nannochloropsis gaditana]) HSP 1 Score: 796.193 bits (2055), Expect = 0.000e+0 Identity = 393/393 (100.00%), Postives = 393/393 (100.00%), Query Frame = 0
Query: 1 MVDAGLEAEEPNILVIVIDADPASWQRIHSGELARPQDRPSSEAPQIFMTFPHLLDTLMVFIDAYLLTHRANRVAVVAALHDKSDFLYPPPVPAPPPSDPPKSEGPTKAPVIKLEKMVYEAACDQHATVAAVEGGQDGVDALKTNGATSKGPPLAPVSPPSGGSESERVSHAVTRGLQRLLAPTSAVALDGPEVSGPGARPEVSGPGARPSLRPVSRTSQALSKSLCYIQRALRESPSLSARMLVLQASADAHGDYNAFMNCTFSAQRSSVPIDAAVFSSPASVHKDSSFLQQASYITGGVYVRPDRPEALLQYFLHLFLPSHHLRQALRLPKQESVDFRAACFCHRKAVEQAYVCSVCLSIFCAFAPECATCGTPARPLKGSGKGAGRRSRD 393
MVDAGLEAEEPNILVIVIDADPASWQRIHSGELARPQDRPSSEAPQIFMTFPHLLDTLMVFIDAYLLTHRANRVAVVAALHDKSDFLYPPPVPAPPPSDPPKSEGPTKAPVIKLEKMVYEAACDQHATVAAVEGGQDGVDALKTNGATSKGPPLAPVSPPSGGSESERVSHAVTRGLQRLLAPTSAVALDGPEVSGPGARPEVSGPGARPSLRPVSRTSQALSKSLCYIQRALRESPSLSARMLVLQASADAHGDYNAFMNCTFSAQRSSVPIDAAVFSSPASVHKDSSFLQQASYITGGVYVRPDRPEALLQYFLHLFLPSHHLRQALRLPKQESVDFRAACFCHRKAVEQAYVCSVCLSIFCAFAPECATCGTPARPLKGSGKGAGRRSRD
Sbjct: 1 MVDAGLEAEEPNILVIVIDADPASWQRIHSGELARPQDRPSSEAPQIFMTFPHLLDTLMVFIDAYLLTHRANRVAVVAALHDKSDFLYPPPVPAPPPSDPPKSEGPTKAPVIKLEKMVYEAACDQHATVAAVEGGQDGVDALKTNGATSKGPPLAPVSPPSGGSESERVSHAVTRGLQRLLAPTSAVALDGPEVSGPGARPEVSGPGARPSLRPVSRTSQALSKSLCYIQRALRESPSLSARMLVLQASADAHGDYNAFMNCTFSAQRSSVPIDAAVFSSPASVHKDSSFLQQASYITGGVYVRPDRPEALLQYFLHLFLPSHHLRQALRLPKQESVDFRAACFCHRKAVEQAYVCSVCLSIFCAFAPECATCGTPARPLKGSGKGAGRRSRD 393
BLAST of EWM26855.1 vs. NCBI_GenBank
Match: gi|585108949|gb|EWM26854.1| (general transcription factor iih [Nannochloropsis gaditana]) HSP 1 Score: 791.956 bits (2044), Expect = 0.000e+0 Identity = 393/394 (99.75%), Postives = 393/394 (99.75%), Query Frame = 0
Query: 1 MVDAGLEAEEPNILVIVIDADPASWQRIHS-GELARPQDRPSSEAPQIFMTFPHLLDTLMVFIDAYLLTHRANRVAVVAALHDKSDFLYPPPVPAPPPSDPPKSEGPTKAPVIKLEKMVYEAACDQHATVAAVEGGQDGVDALKTNGATSKGPPLAPVSPPSGGSESERVSHAVTRGLQRLLAPTSAVALDGPEVSGPGARPEVSGPGARPSLRPVSRTSQALSKSLCYIQRALRESPSLSARMLVLQASADAHGDYNAFMNCTFSAQRSSVPIDAAVFSSPASVHKDSSFLQQASYITGGVYVRPDRPEALLQYFLHLFLPSHHLRQALRLPKQESVDFRAACFCHRKAVEQAYVCSVCLSIFCAFAPECATCGTPARPLKGSGKGAGRRSRD 393
MVDAGLEAEEPNILVIVIDADPASWQRIHS GELARPQDRPSSEAPQIFMTFPHLLDTLMVFIDAYLLTHRANRVAVVAALHDKSDFLYPPPVPAPPPSDPPKSEGPTKAPVIKLEKMVYEAACDQHATVAAVEGGQDGVDALKTNGATSKGPPLAPVSPPSGGSESERVSHAVTRGLQRLLAPTSAVALDGPEVSGPGARPEVSGPGARPSLRPVSRTSQALSKSLCYIQRALRESPSLSARMLVLQASADAHGDYNAFMNCTFSAQRSSVPIDAAVFSSPASVHKDSSFLQQASYITGGVYVRPDRPEALLQYFLHLFLPSHHLRQALRLPKQESVDFRAACFCHRKAVEQAYVCSVCLSIFCAFAPECATCGTPARPLKGSGKGAGRRSRD
Sbjct: 1 MVDAGLEAEEPNILVIVIDADPASWQRIHSAGELARPQDRPSSEAPQIFMTFPHLLDTLMVFIDAYLLTHRANRVAVVAALHDKSDFLYPPPVPAPPPSDPPKSEGPTKAPVIKLEKMVYEAACDQHATVAAVEGGQDGVDALKTNGATSKGPPLAPVSPPSGGSESERVSHAVTRGLQRLLAPTSAVALDGPEVSGPGARPEVSGPGARPSLRPVSRTSQALSKSLCYIQRALRESPSLSARMLVLQASADAHGDYNAFMNCTFSAQRSSVPIDAAVFSSPASVHKDSSFLQQASYITGGVYVRPDRPEALLQYFLHLFLPSHHLRQALRLPKQESVDFRAACFCHRKAVEQAYVCSVCLSIFCAFAPECATCGTPARPLKGSGKGAGRRSRD 394
BLAST of EWM26855.1 vs. NCBI_GenBank
Match: gi|1069948697|ref|XP_018293465.1| (hypothetical protein PHYBLDRAFT_180792 [Phycomyces blakesleeanus NRRL 1555(-)] >gi|1026590953|gb|OAD75425.1| hypothetical protein PHYBLDRAFT_180792 [Phycomyces blakesleeanus NRRL 1555(-)]) HSP 1 Score: 192.971 bits (489), Expect = 5.973e-55 Identity = 122/377 (32.36%), Postives = 174/377 (46.15%), Query Frame = 0
Query: 1 MVDAGLEAEEPNILVIVIDADPASWQRIHSGELARPQDRPSSEAPQIFMTFPHLLDTLMVFIDAYLLTHRANRVAVVAALHDKSDFLYPPPVPAPPPSDPPKSEGPTKAPVIKLEKMVYEAACDQHATVAAVEGGQDGVDALKTNGATSKGPPLAPVSPPSGGSESERVSHAVTRGLQRLLAPTSAVALDGPEVSGPGARPEVSGPGARPSLRPVSRTSQALSKSLCYIQRALR--ESPSLSARMLVLQASADAHGDYNAFMNCTFSAQRSSVPIDAAVFSSPASVHKDSSFLQQASYITGGVYVRPDRPEALLQYFLHLFLPSHHLRQALRLPKQESVDFRAACFCHRKAVEQAYVCSVCLSIFCAFAPECATCGT 375
M DA ++ N+LV++ID +P W S + ++ L +++FI+A+L N+V V+A+ S FLYP P TV +K+N + + + P + V+ + LQ L A T +L GPG V+G A S +LCYI R + E + R+L+L S D+ Y MNC FSAQ++S+P+D ++++FLQQAS ITGGVYV+ D +ALLQY + FLP + R L LP Q+ VDFRAACFCH+K V+ YVCSVCLSIFC+++P C+TC T
Sbjct: 1 MKDASTSEDDSNLLVLIIDTNPFVWAE--------------SAKATVPLSLDDALRQILIFINAHLALKYNNKVTVIASHVGHSKFLYPLP---------------------------------NEETVQ-----------IKSNNGSRRNANMYP--------NFQFVTDQIVSSLQELFANTDPSSLQ----EGPGTSSMVTG---------------AFSMALCYIHRITKQDELGHIKPRILILSVSPDSASQYIPLMNCIFSAQKASIPVDVCKIYG-----EETAFLQQASNITGGVYVKVDNSQALLQYLMFAFLPERYARNYLNLPNQDQVDFRAACFCHKKIVDIGYVCSVCLSIFCSWSPVCSTCKT 287
BLAST of EWM26855.1 vs. NCBI_GenBank
Match: gi|698780801|ref|XP_009823444.1| (hypothetical protein H257_01771 [Aphanomyces astaci] >gi|574121168|gb|ETV86645.1| hypothetical protein H257_01771 [Aphanomyces astaci]) HSP 1 Score: 176.792 bits (447), Expect = 3.580e-49 Identity = 84/166 (50.60%), Postives = 112/166 (67.47%), Query Frame = 0
Query: 219 SQALSKSLCYIQRALRESPSLSARMLVLQASADAHGDYNAFMNCTFSAQRSSVPIDAAVFSSPASVHKDSSFLQQASYITGGVYVRPDRPEALLQYFLHLFLPSHHLRQALRLPKQESVDFRAACFCHRKAVEQAYVCSVCLSIFCAFAPECATCG--TPARPLKG 382
S LS +LC+I RA+ ES L R+LV+ S D Y + MNC FSAQ+ VPID+ V +S + S+FLQQASY+TGG+Y +P P+ L+QYFL ++L RQ L+LP Q SVDFRA CFCH++ + A+VC VCLS+FC F+P C+TCG + +PLK
Sbjct: 112 SAGLSLALCFINRAMNESRELQPRILVVDGSPDFAEQYISIMNCIFSAQKKHVPIDSCVLAS-----EPSAFLQQASYLTGGIYFKPKEPQGLVQYFLSIWLADADTRQMLKLPTQASVDFRAMCFCHKQTISTAFVCPVCLSLFCEFSPVCSTCGIRSQIKPLKA 272
BLAST of EWM26855.1 vs. NCBI_GenBank
Match: gi|566024931|gb|ETI47842.1| (hypothetical protein F443_07986 [Phytophthora parasitica P1569]) HSP 1 Score: 176.407 bits (446), Expect = 7.866e-49 Identity = 79/154 (51.30%), Postives = 108/154 (70.13%), Query Frame = 0
Query: 221 ALSKSLCYIQRALRESPSLSARMLVLQASADAHGDYNAFMNCTFSAQRSSVPIDAAVFSSPASVHKDSSFLQQASYITGGVYVRPDRPEALLQYFLHLFLPSHHLRQALRLPKQESVDFRAACFCHRKAVEQAYVCSVCLSIFCAFAPECATCG 374
+LS+SLC+I RA+ E P L R+LV+Q S D Y A MN FSAQ+ +V +DA + S+ + SSF+QQA+Y+TGG+Y +P+ LLQY + ++LP +R+ L+LP Q+SVDFRA CFCHR+ + AYVC VCLS+FC F P C+TCG
Sbjct: 125 SLSRSLCFINRAINEEPDLRPRILVIQKSPDVSEHYIAIMNGIFSAQKKNVAVDACILST-----EHSSFMQQAAYLTGGIYYKPNDHSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVISTAYVCPVCLSLFCEFRPICSTCG 273
BLAST of EWM26855.1 vs. NCBI_GenBank
Match: gi|675191693|ref|XP_008904731.1| (hypothetical protein PPTG_10953 [Phytophthora parasitica INRA-310] >gi|567962303|gb|ETK87829.1| hypothetical protein L915_07812 [Phytophthora parasitica] >gi|567991032|gb|ETL41249.1| hypothetical protein L916_07742 [Phytophthora parasitica] >gi|568050703|gb|ETM47636.1| hypothetical protein L914_07705 [Phytophthora parasitica] >gi|568095526|gb|ETN10294.1| hypothetical protein PPTG_10953 [Phytophthora parasitica INRA-310] >gi|570328669|gb|ETO76617.1| hypothetical protein F444_08029 [Phytophthora parasitica P1976] >gi|570952413|gb|ETP17670.1| hypothetical protein F441_07955 [Phytophthora parasitica CJ01A1] >gi|570986802|gb|ETP45727.1| hypothetical protein F442_07922 [Phytophthora parasitica P10297]) HSP 1 Score: 176.407 bits (446), Expect = 8.565e-49 Identity = 79/154 (51.30%), Postives = 108/154 (70.13%), Query Frame = 0
Query: 221 ALSKSLCYIQRALRESPSLSARMLVLQASADAHGDYNAFMNCTFSAQRSSVPIDAAVFSSPASVHKDSSFLQQASYITGGVYVRPDRPEALLQYFLHLFLPSHHLRQALRLPKQESVDFRAACFCHRKAVEQAYVCSVCLSIFCAFAPECATCG 374
+LS+SLC+I RA+ E P L R+LV+Q S D Y A MN FSAQ+ +V +DA + S+ + SSF+QQA+Y+TGG+Y +P+ LLQY + ++LP +R+ L+LP Q+SVDFRA CFCHR+ + AYVC VCLS+FC F P C+TCG
Sbjct: 125 SLSRSLCFINRAINEEPDLRPRILVIQKSPDVSEHYIAIMNGIFSAQKKNVAVDACILST-----EHSSFMQQAAYLTGGIYYKPNDHSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVISTAYVCPVCLSLFCEFRPICSTCG 273
BLAST of EWM26855.1 vs. NCBI_GenBank
Match: gi|301122235|ref|XP_002908844.1| (general transcription factor IIH subunit, putative [Phytophthora infestans T30-4] >gi|262099606|gb|EEY57658.1| general transcription factor IIH subunit, putative [Phytophthora infestans T30-4]) HSP 1 Score: 176.022 bits (445), Expect = 1.026e-48 Identity = 79/154 (51.30%), Postives = 108/154 (70.13%), Query Frame = 0
Query: 221 ALSKSLCYIQRALRESPSLSARMLVLQASADAHGDYNAFMNCTFSAQRSSVPIDAAVFSSPASVHKDSSFLQQASYITGGVYVRPDRPEALLQYFLHLFLPSHHLRQALRLPKQESVDFRAACFCHRKAVEQAYVCSVCLSIFCAFAPECATCG 374
+LS+SLC+I RA+ E P L R+LV+Q S D Y A MN FSAQ+ SV +DA + ++ + SSF+QQA+Y+TGG+Y +P+ LLQY + ++LP +R+ L+LP Q+SVDFRA CFCHR+ + AYVC VCLS+FC F P C+TCG
Sbjct: 125 SLSRSLCFINRAINEEPDLRPRILVIQKSPDVSEHYIAIMNGIFSAQKKSVAVDACILAT-----EHSSFMQQAAYLTGGIYYKPNDHSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVISTAYVCPVCLSLFCEFRPICSTCG 273
BLAST of EWM26855.1 vs. NCBI_GenBank
Match: gi|970654046|gb|KUF92417.1| (Lysosomal beta glucosidase [Phytophthora nicotianae]) HSP 1 Score: 176.022 bits (445), Expect = 1.216e-48 Identity = 79/154 (51.30%), Postives = 108/154 (70.13%), Query Frame = 0
Query: 221 ALSKSLCYIQRALRESPSLSARMLVLQASADAHGDYNAFMNCTFSAQRSSVPIDAAVFSSPASVHKDSSFLQQASYITGGVYVRPDRPEALLQYFLHLFLPSHHLRQALRLPKQESVDFRAACFCHRKAVEQAYVCSVCLSIFCAFAPECATCG 374
+LS+SLC+I RA+ E P L R+LV+Q S D Y A MN FSAQ+ +V +DA + S+ + SSF+QQA+Y+TGG+Y +P+ LLQY + ++LP +R+ L+LP Q+SVDFRA CFCHR+ + AYVC VCLS+FC F P C+TCG
Sbjct: 125 SLSRSLCFINRAINEEPDLRPRILVIQKSPDLSEHYIAIMNGIFSAQKKNVAVDACILST-----EHSSFMQQAAYLTGGIYYKPNDHSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVISTAYVCPVCLSLFCEFRPICSTCG 273
BLAST of EWM26855.1 vs. NCBI_GenBank
Match: gi|568020279|gb|ETL94412.1| (hypothetical protein L917_07627 [Phytophthora parasitica]) HSP 1 Score: 175.252 bits (443), Expect = 2.253e-48 Identity = 79/154 (51.30%), Postives = 107/154 (69.48%), Query Frame = 0
Query: 221 ALSKSLCYIQRALRESPSLSARMLVLQASADAHGDYNAFMNCTFSAQRSSVPIDAAVFSSPASVHKDSSFLQQASYITGGVYVRPDRPEALLQYFLHLFLPSHHLRQALRLPKQESVDFRAACFCHRKAVEQAYVCSVCLSIFCAFAPECATCG 374
+LS+SLC+I RA+ E P L R+LV+Q S D Y A MN FSAQ+ +V +DA + S + SSF+QQA+Y+TGG+Y +P+ LLQY + ++LP +R+ L+LP Q+SVDFRA CFCHR+ + AYVC VCLS+FC F P C+TCG
Sbjct: 125 SLSRSLCFINRAINEEPDLRPRILVIQKSPDVSEHYIAIMNGIFSAQKKNVAVDACILSM-----EHSSFMQQAAYLTGGIYYKPNDHSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVISTAYVCPVCLSLFCEFRPICSTCG 273
BLAST of EWM26855.1 vs. NCBI_GenBank
Match: gi|695427967|ref|XP_009529831.1| (hypothetical protein PHYSODRAFT_508027 [Phytophthora sojae] >gi|348676264|gb|EGZ16082.1| hypothetical protein PHYSODRAFT_508027 [Phytophthora sojae]) HSP 1 Score: 174.481 bits (441), Expect = 4.393e-48 Identity = 78/154 (50.65%), Postives = 108/154 (70.13%), Query Frame = 0
Query: 221 ALSKSLCYIQRALRESPSLSARMLVLQASADAHGDYNAFMNCTFSAQRSSVPIDAAVFSSPASVHKDSSFLQQASYITGGVYVRPDRPEALLQYFLHLFLPSHHLRQALRLPKQESVDFRAACFCHRKAVEQAYVCSVCLSIFCAFAPECATCG 374
+LS++LC+I RA+ E P L R+LV+Q S D Y A MN FSAQ+ SV +DA + + ++ SSF+QQA+Y+TGG+Y +P+ LLQY + ++LP +R+ L+LP Q+SVDFRA CFCHR+ + AYVC VCLS+FC F P C+TCG
Sbjct: 130 SLSRALCFINRAINEEPDLRPRILVVQKSPDVSEHYIAIMNGIFSAQKKSVAVDACILA-----NEHSSFMQQAAYLTGGIYYKPNDHSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVISTAYVCPVCLSLFCEFRPICSTCG 278 The following BLAST results are available for this feature:
BLAST of EWM26855.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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