rna3812, rna3812 (mRNA) Nannochloropsis gaditana

Overview
Namerna3812
Unique Namerna3812
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length262
Alignment locationCM002462.1:116653..117642 -

Link to JBrowse

Properties
Property NameValue
Productglutamate synthase
Orig transcript idgnl|cribi|Naga_101084g2.8481.mrna
Orig protein idgnl|cribi|Naga_101084g2.8481
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:116653..117642 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101084g2gene3670Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3812rna3812-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26870.1cds3803Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3812 ID=rna3812|Name=rna3812|organism=Nannochloropsis gaditana|type=mRNA|length=262bp
TCCCAGCCCTTTACAAGATGAATCACGACGGTCACGTGCAAGCGCGGGCC
CAAATTGCCTTCACGGACGAGGAGCTCGTCTATGCGTACCGCAAGGCTCT
GGCCAAGGGCATCCTCAAGGTCGCTGTCTCCCGCCCTCCCTCCCGCCCTC
CCCCCGCCCTCCCTCGGCTGTCTCTCCTTGTCCATTCCCCCGTCTCTCCG
TCTCTCCCTCCCTTCGACACTTTCTCCTTCTCTCCGGGGTAATCGCACCC
ATATTTACCTCC
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protein sequence of rna3812

>rna3812-protein ID=rna3812-protein|Name=rna3812|organism=Nannochloropsis gaditana|type=polypeptide|length=144bp
MLRLLSAGRTGSLVSSVSSGARLQASAAILARPRPGYGISNKSLGNTRLI
TAFPETQGLYNKANERDSCGVGLVAHLKKKASRQIVVDANEMLVRMSHRG
GCGCEPNTGDGAGMLVGLPDHFLRKVVKNELGKSLPPLGKYAVG
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mRNA from alignment at CM002462.1:116653..117642-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3812 ID=rna3812|Name=rna3812|organism=Nannochloropsis gaditana|type=mRNA|length=990bp|location=Sequence derived from alignment at CM002462.1:116653..117642- (Nannochloropsis gaditana)
TGTAGGGCTCTCAGGCTAAAACTACGCGTATGTTCACCCACATTTCTCAA
TCCCCCTATTCGCCAATGGACAGGTGGGAAGCATGCTCCGGCTCCTGTCT
GCGGGCCGCACGGGCTCTCTGGTGTCATCGGTGTCATCAGGCGCGCGCCT
TCAGGCCTCTGCCGCCATCCTGGCCCGGCCTCGTCCGGGATATGGCATCA
GCAATAAATCACTGGGAAATACTCGTCTCATCACGGCTTTCCCGGAAACA
CAAGGTGCGTGTGGAATCGGCATGCCGCATCGGCAGCATGGAAAGGCCAC
GGGTATGCACACGCCTGATGCCCCTTCCCCAACCTCCCCCCCGCCGCTTT
CCCTCCATATCCATCGACCAGGGCTGTACAACAAGGCCAATGAACGCGAC
TCCTGCGGGGTAGGGCTGGTCGCGCATTTGAAGAAGAAAGCGTCCCGACA
GATCGTGGTGGATGCAAACGAGATGCTAGTGCGCATGTCGCACCGTGGAG
GCTGTGGGTGCGAGCCCAACACAGGTAAGCCACACTATTCCCGCTTTCCT
CCCCTTTTCCGAACCCGTGCCCCCTTCTTGTTTTCCCGAAATTCTTTTTT
TCCCGTCCCTCGCTGTCCTTGTCTGTGCATCATTCGTGTGACTGGGGTGA
CAGAAAGGAGGACGGGTCATGTCTGGCCCCTACCCGGTGGCCCGGCCCTC
CTCGCCTCTGTGGGGAAGCGGCGTCCTCCCTCCAACCGTCTTCGTCTTTG
TTGTATCTTTCCCTTTCCCGATCATTGGAGAGAGACGCAGAGCGCGTCAC
GAATTTGTCTCACCACCCGTCCTGTCCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCTCTCCCTCCTTCTCACAGGTGACGGCGCGGGCATGTT
GGTGGGCCTGCCCGACCATTTCCTCCGCAAGGTCGTCAAGAACGAGCTGG
GCAAATCCCTGCCCCCTCTCGGGAAATACGCGGTGGGGAA
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Coding sequence (CDS) from alignment at CM002462.1:116653..117642-

>rna3812 ID=rna3812|Name=rna3812|organism=Nannochloropsis gaditana|type=CDS|length=1302bp|location=Sequence derived from alignment at CM002462.1:116653..117642- (Nannochloropsis gaditana)
GTGACGGCGCGGGCATGTTGGTGGGCCTGCCCGACCATTTCCTCCGCAAG
GTCGTCAAGAACGAGCTGGGCAAATCCCTGCCCCCTCTCGGGAAATACGC
GGTGGGGAAGGCTGTACAACAAGGCCAATGAACGCGACTCCTGCGGGGTA
GGGCTGGTCGCGCATTTGAAGAAGAAAGCGTCCCGACAGATCGTGGTGGA
TGCAAACGAGATGCTAGTGCGCATGTCGCACCGTGGAGGCTGTGGGTGCG
AGCCCAACACAGATGCTCCGGCTCCTGTCTGCGGGCCGCACGGGCTCTCT
GGTGTCATCGGTGTCATCAGGCGCGCGCCTTCAGGCCTCTGCCGCCATCC
TGGCCCGGCCTCGTCCGGGATATGGCATCAGCAATAAATCACTGGGAAAT
ACTCGTCTCATCACGGCTTTCCCGGAAACACAAGGTGACGGCGCGGGCAT
GTTGGTGGGCCTGCCCGACCATTTCCTCCGCAAGGTCGTCAAGAACGAGC
TGGGCAAATCCCTGCCCCCTCTCGGGAAATACGCGGTGGGGAAGGCTGTA
CAACAAGGCCAATGAACGCGACTCCTGCGGGGTAGGGCTGGTCGCGCATT
TGAAGAAGAAAGCGTCCCGACAGATCGTGGTGGATGCAAACGAGATGCTA
GTGCGCATGTCGCACCGTGGAGGCTGTGGGTGCGAGCCCAACACAGATGC
TCCGGCTCCTGTCTGCGGGCCGCACGGGCTCTCTGGTGTCATCGGTGTCA
TCAGGCGCGCGCCTTCAGGCCTCTGCCGCCATCCTGGCCCGGCCTCGTCC
GGGATATGGCATCAGCAATAAATCACTGGGAAATACTCGTCTCATCACGG
CTTTCCCGGAAACACAAGGTGACGGCGCGGGCATGTTGGTGGGCCTGCCC
GACCATTTCCTCCGCAAGGTCGTCAAGAACGAGCTGGGCAAATCCCTGCC
CCCTCTCGGGAAATACGCGGTGGGGAAGGCTGTACAACAAGGCCAATGAA
CGCGACTCCTGCGGGGTAGGGCTGGTCGCGCATTTGAAGAAGAAAGCGTC
CCGACAGATCGTGGTGGATGCAAACGAGATGCTAGTGCGCATGTCGCACC
GTGGAGGCTGTGGGTGCGAGCCCAACACAGATGCTCCGGCTCCTGTCTGC
GGGCCGCACGGGCTCTCTGGTGTCATCGGTGTCATCAGGCGCGCGCCTTC
AGGCCTCTGCCGCCATCCTGGCCCGGCCTCGTCCGGGATATGGCATCAGC
AATAAATCACTGGGAAATACTCGTCTCATCACGGCTTTCCCGGAAACACA
AG
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Synonyms
Publications