EWM26870.1, cds3803 (CDS) Nannochloropsis gaditana

Overview
NameEWM26870.1
Unique Namecds3803
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:117389..117560 -
Alignment locationCM002462.1:117119..117271 -
Alignment locationCM002462.1:116653..116761 -

Link to JBrowse

Properties
Property NameValue
Start range116653
Start range.
Protein idEWM26870.1
Productglutamate synthase
Partialtrue
Orig transcript idgnl|cribi|Naga_101084g2.8481.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:117389..117560 -
CM002462.1supercontigCM002462.1:117119..117271 -
CM002462.1supercontigCM002462.1:116653..116761 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR017932GATase_2_dom
IPR000583GATase_dom
IPR029055Ntn_hydrolases_N
Homology
BLAST of EWM26870.1 vs. NCBI_GenBank
Match: gi|585108968|gb|EWM26870.1| (glutamate synthase, partial [Nannochloropsis gaditana])

HSP 1 Score: 290.812 bits (743), Expect = 1.700e-99
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0
Query:    1 MLRLLSAGRTGSLVSSVSSGARLQASAAILARPRPGYGISNKSLGNTRLITAFPETQGLYNKANERDSCGVGLVAHLKKKASRQIVVDANEMLVRMSHRGGCGCEPNTGDGAGMLVGLPDHFLRKVVKNELGKSLPPLGKYAVG 144
            MLRLLSAGRTGSLVSSVSSGARLQASAAILARPRPGYGISNKSLGNTRLITAFPETQGLYNKANERDSCGVGLVAHLKKKASRQIVVDANEMLVRMSHRGGCGCEPNTGDGAGMLVGLPDHFLRKVVKNELGKSLPPLGKYAVG
Sbjct:    1 MLRLLSAGRTGSLVSSVSSGARLQASAAILARPRPGYGISNKSLGNTRLITAFPETQGLYNKANERDSCGVGLVAHLKKKASRQIVVDANEMLVRMSHRGGCGCEPNTGDGAGMLVGLPDHFLRKVVKNELGKSLPPLGKYAVG 144          
BLAST of EWM26870.1 vs. NCBI_GenBank
Match: gi|1200365489|gb|OUU84716.1| (hypothetical protein CBC36_11780, partial [Verrucomicrobiaceae bacterium TMED76])

HSP 1 Score: 130.183 bits (326), Expect = 2.574e-36
Identity = 60/95 (63.16%), Postives = 73/95 (76.84%), Query Frame = 0
Query:   50 ITAFPETQGLYNKANERDSCGVGLVAHLKKKASRQIVVDANEMLVRMSHRGGCGCEPNTGDGAGMLVGLPDHFLRKVVKNELGKSLPPLGKYAVG 144
              AFP+  GLY+ A E+DSCGVG VA++K     QIV+DA EMLVRM HRGGCGCEPNTGDGAG+L+GLP+ FLRKV K++LG  LP  G++  G
Sbjct:    3 FKAFPKKHGLYDPAYEKDSCGVGFVANMKGVPDHQIVLDALEMLVRMEHRGGCGCEPNTGDGAGILIGLPEGFLRKVAKSDLGLELPAKGQFGAG 97          
BLAST of EWM26870.1 vs. NCBI_GenBank
Match: gi|1200370973|gb|OUU89956.1| (glutamate synthase large subunit [Verrucomicrobiaceae bacterium TMED76])

HSP 1 Score: 132.109 bits (331), Expect = 6.424e-33
Identity = 60/95 (63.16%), Postives = 73/95 (76.84%), Query Frame = 0
Query:   50 ITAFPETQGLYNKANERDSCGVGLVAHLKKKASRQIVVDANEMLVRMSHRGGCGCEPNTGDGAGMLVGLPDHFLRKVVKNELGKSLPPLGKYAVG 144
              AFP+  GLY+ A E+DSCGVG VA++K     QIV+DA EMLVRM HRGGCGCEPNTGDGAG+L+GLP+ FLRKV K++LG  LP  G++  G
Sbjct:    3 FKAFPKKHGLYDPAYEKDSCGVGFVANMKGVPDHQIVLDALEMLVRMEHRGGCGCEPNTGDGAGILIGLPEGFLRKVAKSDLGLELPAKGQFGAG 97          
BLAST of EWM26870.1 vs. NCBI_GenBank
Match: gi|299470149|emb|CBN78177.1| (Glutamate synthase (NADH/NADPH-dependent), N-terminal part [Ectocarpus siliculosus])

HSP 1 Score: 125.176 bits (313), Expect = 2.944e-32
Identity = 59/87 (67.82%), Postives = 67/87 (77.01%), Query Frame = 0
Query:   58 GLYNKANERDSCGVGLVAHLKKKASRQIVVDANEMLVRMSHRGGCGCEPNTGDGAGMLVGLPDHFLRKVVKNELGKSLPPLGKYAVG 144
            GLY+ A E+DSCGVGL   +K  ASRQIVVDANEMLVRM+HRG CGCE NTGDGAG+LV +PD FLRK  +      LPP G+YAVG
Sbjct:   73 GLYDPALEKDSCGVGLAVQMKSVASRQIVVDANEMLVRMTHRGACGCEENTGDGAGILVAVPDGFLRKAAQEAGIGELPPEGEYAVG 159          
BLAST of EWM26870.1 vs. NCBI_GenBank
Match: gi|1200399475|gb|OUV17214.1| (glutamate synthase large subunit [Euryarchaeota archaeon TMED99])

HSP 1 Score: 129.798 bits (325), Expect = 4.049e-32
Identity = 59/92 (64.13%), Postives = 72/92 (78.26%), Query Frame = 0
Query:   53 FPETQGLYNKANERDSCGVGLVAHLKKKASRQIVVDANEMLVRMSHRGGCGCEPNTGDGAGMLVGLPDHFLRKVVKNELGKSLPPLGKYAVG 144
             P+ QGLY+ ANE+DSCGVG VA+LK   S Q V+DA +MLV M HRGGCGCEPNTGDGAG+LVGLP++FLRKV + +LG  LP  G++  G
Sbjct:    9 LPQKQGLYDPANEKDSCGVGFVANLKGLPSHQNVLDALQMLVNMEHRGGCGCEPNTGDGAGILVGLPENFLRKVAQEDLGVELPAKGRFGAG 100          
BLAST of EWM26870.1 vs. NCBI_GenBank
Match: gi|502875972|ref|WP_013110948.1| (glutamate synthase subunit alpha [Planctopirus limnophila] >gi|296015278|gb|ADG68517.1| Glutamate synthase (NADH) [Planctopirus limnophila DSM 3776])

HSP 1 Score: 127.872 bits (320), Expect = 1.893e-31
Identity = 55/91 (60.44%), Postives = 69/91 (75.82%), Query Frame = 0
Query:   54 PETQGLYNKANERDSCGVGLVAHLKKKASRQIVVDANEMLVRMSHRGGCGCEPNTGDGAGMLVGLPDHFLRKVVKNELGKSLPPLGKYAVG 144
            P+  GLY+ ANE DSCGVG VAH+K + S QIVVDA+ +L  MSHRG CGCE NTGDGAGML G+P  FL++VV+ +L   LPP G++ +G
Sbjct:   60 PKAHGLYDPANEHDSCGVGFVAHIKGQKSHQIVVDADRILRHMSHRGACGCEENTGDGAGMLTGIPYQFLKRVVRKDLSAELPPEGRFGIG 150          
BLAST of EWM26870.1 vs. NCBI_GenBank
Match: gi|1057559058|ref|WP_068852761.1| (glutamate synthase subunit alpha [Planctopirus sp. JC280] >gi|1055860486|gb|ODA28325.1| glutamate synthase subunit alpha [Planctopirus sp. JC280])

HSP 1 Score: 127.872 bits (320), Expect = 2.002e-31
Identity = 55/91 (60.44%), Postives = 69/91 (75.82%), Query Frame = 0
Query:   54 PETQGLYNKANERDSCGVGLVAHLKKKASRQIVVDANEMLVRMSHRGGCGCEPNTGDGAGMLVGLPDHFLRKVVKNELGKSLPPLGKYAVG 144
            P+  GLY+ ANE DSCGVG VAH+K + S QIVVDA+ +L  MSHRG CGCE NTGDGAGML G+P  FL++VV+ +L   LPP G++ +G
Sbjct:    8 PKAHGLYDPANEHDSCGVGFVAHIKGQKSHQIVVDADRILRHMSHRGACGCEENTGDGAGMLTGIPYQFLKRVVRKDLSAELPPEGRFGIG 98          
BLAST of EWM26870.1 vs. NCBI_GenBank
Match: gi|552847533|ref|XP_005851884.1| (hypothetical protein CHLNCDRAFT_33619 [Chlorella variabilis] >gi|307111548|gb|EFN59782.1| hypothetical protein CHLNCDRAFT_33619 [Chlorella variabilis])

HSP 1 Score: 127.487 bits (319), Expect = 2.803e-31
Identity = 59/94 (62.77%), Postives = 69/94 (73.40%), Query Frame = 0
Query:   51 TAFPETQGLYNKANERDSCGVGLVAHLKKKASRQIVVDANEMLVRMSHRGGCGCEPNTGDGAGMLVGLPDHFLRKVVKNELGKSLPPLGKYAVG 144
            +A PE QGL+N  N++DSCGVG VA L K+  R+ V +A EML RMSHRG CGCE NTGDGAG+LV +P  FL  VV+ E G  LPPLG YAVG
Sbjct:    8 SAIPEAQGLFNPENDKDSCGVGFVAELSKEPQRKTVTEALEMLKRMSHRGACGCEVNTGDGAGILVAIPHLFLSMVVEKECGIELPPLGDYAVG 101          
BLAST of EWM26870.1 vs. NCBI_GenBank
Match: gi|1099564770|emb|SFH85495.1| (glutamate synthase (NADPH/NADH) large chain [Planctomicrobium piriforme])

HSP 1 Score: 127.102 bits (318), Expect = 3.548e-31
Identity = 58/95 (61.05%), Postives = 68/95 (71.58%), Query Frame = 0
Query:   50 ITAFPETQGLYNKANERDSCGVGLVAHLKKKASRQIVVDANEMLVRMSHRGGCGCEPNTGDGAGMLVGLPDHFLRKVVKNELGKSLPPLGKYAVG 144
            +T FPE QGLY+   E DSCGVG VAH+K + S QI++DA+ +   M+HRG CGCE NTGDGAG+L  LPD FLRKV K ELG  LP  GKY  G
Sbjct:    4 LTGFPEDQGLYSSEFEHDSCGVGFVAHIKGQPSHQIILDADRINRHMTHRGACGCEENTGDGAGILTALPDKFLRKVAKAELGIDLPAKGKYGAG 98          
BLAST of EWM26870.1 vs. NCBI_GenBank
Match: gi|1015451240|gb|AMV33023.1| (Ferredoxin-dependent glutamate synthase 1 [Pirellula sp. SH-Sr6A])

HSP 1 Score: 126.716 bits (317), Expect = 5.646e-31
Identity = 55/92 (59.78%), Postives = 68/92 (73.91%), Query Frame = 0
Query:   53 FPETQGLYNKANERDSCGVGLVAHLKKKASRQIVVDANEMLVRMSHRGGCGCEPNTGDGAGMLVGLPDHFLRKVVKNELGKSLPPLGKYAVG 144
            FPE  GLY+   E+DSCGVG VAH+K + S QIVVDA+ +L  M HRG CGCE NTGDGAG+LVG+PD F+R++ K E    LP +G Y+VG
Sbjct:    7 FPEKNGLYDPELEKDSCGVGFVAHIKGQPSHQIVVDADTILKNMDHRGACGCEANTGDGAGILVGMPDKFVRRIAKEEFDVELPQVGFYSVG 98          
The following BLAST results are available for this feature:
BLAST of EWM26870.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108968|gb|EWM26870.1|1.700e-99100.00glutamate synthase, partial [Nannochloropsis gadit... [more]
gi|1200365489|gb|OUU84716.1|2.574e-3663.16hypothetical protein CBC36_11780, partial [Verruco... [more]
gi|1200370973|gb|OUU89956.1|6.424e-3363.16glutamate synthase large subunit [Verrucomicrobiac... [more]
gi|299470149|emb|CBN78177.1|2.944e-3267.82Glutamate synthase (NADH/NADPH-dependent), N-termi... [more]
gi|1200399475|gb|OUV17214.1|4.049e-3264.13glutamate synthase large subunit [Euryarchaeota ar... [more]
gi|502875972|ref|WP_013110948.1|1.893e-3160.44glutamate synthase subunit alpha [Planctopirus lim... [more]
gi|1057559058|ref|WP_068852761.1|2.002e-3160.44glutamate synthase subunit alpha [Planctopirus sp.... [more]
gi|552847533|ref|XP_005851884.1|2.803e-3162.77hypothetical protein CHLNCDRAFT_33619 [Chlorella v... [more]
gi|1099564770|emb|SFH85495.1|3.548e-3161.05glutamate synthase (NADPH/NADH) large chain [Planc... [more]
gi|1015451240|gb|AMV33023.1|5.646e-3159.78Ferredoxin-dependent glutamate synthase 1 [Pirellu... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3812rna3812Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications