rna3809, rna3809 (mRNA) Nannochloropsis gaditana

Overview
Namerna3809
Unique Namerna3809
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length696
Alignment locationCM002462.1:111198..113790 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101061g1.7801.mrna
Orig protein idgnl|cribi|Naga_101061g1.7801
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:111198..113790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101061g1gene3667Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3809rna3809-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26872.1cds3800Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3809 ID=rna3809|Name=rna3809|organism=Nannochloropsis gaditana|type=mRNA|length=696bp
CCTCCCTCCCTCCCTCTTTCCCGGCAGGTCACCCACCTCTTTGGTGTCCG
CCACTACGCGGGCGAGGTCGCTTACAACACTCAAGGCTTCTTAGACAAAA
ACCGAGACACCCTTCCCAAGGAGACTGCGGCATTGTTCCTCTCTTCGGAC
TCCTCCTTCGTGCAAAGCCTCTTCAAGGGCAGCCCTCCCACGGGGGCCGG
AGCGGCCTCCACCCCATCCTCTGCCGCCTCCTCGCCCCTCAGGCGGTCCG
CTTCACATACAGGAGCGGGAGGGAGGGGCGGAGGAGGAGGTACCCCTTCC
TCCTCTTTAACCTCCCTGTCTGTTTCCAGCCAATTTAAGCAGCAGCTCCT
AGAACTAATGTCGAAAGTCCACCGGACGCGGCCCCACTACATCCGTTGCC
TGAAACCCAACGACAAGAACGTGCCCGACACCTTCAACCGATTTCGCATC
ACGGAGCAACTGCGCTACGGTGGTGTCTTGGAGGCCGTGCGTGTGGCAAG
ATCCGGGTATCCTGTCCGCCTGGTGCACAGCGAGTTCTACGCCCGCTACC
GGTGCCTGGCCGTGGCCCTCGCCCTCCCTCCTTCCCGTTCCCCCTCCCTT
CCGCACGTGATCGACGCGGTGCGGGACCCTCTGAAGACGCGAGAATGGTG
CTGGCGGGTGTTGGATGCGATTTTGGAGAACCAGGTCGGGCGATAG
back to top

protein sequence of rna3809

>rna3809-protein ID=rna3809-protein|Name=rna3809|organism=Nannochloropsis gaditana|type=polypeptide|length=440bp
EGAGEGGAGRLGSLSTSKGRRTSALGLSHSSLQPSFATSPSLEASAEVVG
AGGGWEEGEYNDLDVSVDLVDEEQPLLSRGDRLQRRRAEVEKLVQRCQGY
RVLLQEGVGVEVMEVLLPPSPAPPSSPSHPFPPSLPPSCTFHPVKMRVEG
LLSPSRLSDPDPTSPLALPIGNEDLVKARLVWEDDKHHPSKRGSFFQSLG
WGRTRRMSSLGTTTASLGPGAQAVPDAIHLTELYGVVRGLRRIRPKAVYL
AAAAAVMAAAEGEAGGRGRDGTQPTLNPDNPPTSAKTTTRVGLALSSAGR
SERVFGRPAQVPGRPLTGRFVSGHLGGVGGGRGGGTGGGLRLGEVAAGAG
QGEAGVCPGGGGRGRRREGGRGRGALRVPGRCPSRAWRGEEGNQTDVWAL
AGHGIRRERTRGREQRAAGGGDEAGVDFERERHGVGEGAP
back to top

mRNA from alignment at CM002462.1:111198..113790+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3809 ID=rna3809|Name=rna3809|organism=Nannochloropsis gaditana|type=mRNA|length=2593bp|location=Sequence derived from alignment at CM002462.1:111198..113790+ (Nannochloropsis gaditana)
gagggggcaggggagggcggggcagggaggctcGGATCGCTTTCTACGag
caaagggaggcggacctCGGCGTTGGGACTGtcgcattcctccctccagc
cctcttTCGctacctcgccctctttgGAGGCGTCTGcagaggtggtgggg
gcggggggcgggtgggaggaaggagagtaCAACGACCTGGACGTCTCGGT
GGACCTTGTAGACGAGGAGCAGCCCCTCTTGAGTCGAGGAGACCGGCTGC
AGCGCCGGCGCGCCGAGGTCGAGAAATTGGTGCAGCGATGCCAGGGTTac
cgcgtccttctccaagagggcgtgggggtggAAGTCATggaggtcctcct
ccctccttcccctgctcctccttcctccccctcccaccccttccctccct
ccctccctccttcctgcacGTTCCACCCGGTAAAGATGCGGGTGGAAGGC
CTCctgtccccttcccgcctgtCCGACCCCGATCCTAcgtcccccctcgc
cctccccatcggCAACGAGGACCTGGTCAAGGCGCGCTTGGTgtgggagg
acgacaaaCACCACCCGAGCAAACGTGGGAGTTTCTTCCAAAGCCTCGGG
TGGGGTCGGACGCGGCGCATGAGCAGTTTGGGAACCACCACGGCATCTCT
GGGACCAGGGGCACAGGCGGTGCCCGATGCCATCCATTTGACTGAGTTGT
ACGGCGTGGTGCGGGGCTTGCGCCGTATCCGTCCCAAGGCAGTGtacttg
gcggcggcggcggctgtgatggcggccgcggagggggaggcaggggggcg
agggagggatggaacaCAGCCGACTCTTAACCCTGACAACCCTCCAACTT
CCGCAAAAACCACGACGCGGGTTGGTCTTGCGCTTTCCTCGGCGGGAAGA
TCGGAACGCGTTTTTGGACGGCCTGCGCAAGTGCCTGGGAGACCTCTTAC
AGGTCGATTTGTCTCCGGCCACcttggaggggttgggggagggagggggg
gagggacggggggaggtcTCCGTTTGGGCGAAGTTGCTGCGGGAGCGGGC
CAAGGCGAGGCCGGCGTTTgtccgggagggggaggaaggggcagaaggcg
ggaaggagggagaggacggggcgctCTACGTGTCCCTGGCCGATGCCCAA
GCCGTGCTTGgcgcggagaggagggaaatcaAACGGACGTTTGGGCTCTT
GCTGGACACGGAATTCGACGTGAACGGACTCGAGGACGAGAACAGAGGGC
TGCGGGCGGAGGTGACGAGGCTGGCGTTGACtttgaaagggaaagacacG
GAGTTGGAGAGGGCGCACCATGAGCAAAAAGGTGAGGGGTGGGGTGGCGG
ATGGCAGGACAGgactgggggagggcgggaggtgggagggttGGTCGATA
AAACCTTGATTTCAGACGTCACAGAcgtggggaggcgggaggcggagcac
GCATTGGAATAGTGATTCTGTCCGTATGGCCGGATTTCGCCGGTTGAAAC
GAGCGCTGCGCGTGCTCAcaattttttcctctcctccatttcctcatTCA
ATTTCTCCgtgtgcccctccctccctccctcctccttccttcctgccttc
ctcgtctgGTCTCCCTTGTTTCCTGCCATGCTCAGAACGTATCGCCCTGC
TGAGAAAGGTGGAAGGCTTGGAGCTACGGAATGCGGATTTGGAGCAAATC
ATGCGCAAGACGGACGAGGCGCAGGAAGCACAACACCGGGAAGAACGCAG
CTTTTTGACTCAACAGCTGGATGGACAGGTGGGAAGCCTTTCCTGAGCTT
TTCTTGttattttctttctctttcttcatttGTATCACGTCCCTCTCTGG
AGGGTTGCTCCTATAGTCTCGTTTTGAGTGGGCCATGGCCGCTTGGTTGA
CTTGTGAGGTCAAGGGCCAGGCAACATCagacttcctccctccctccctc
tcgccctccctttttggTCCCTGTCAGGTGAAAGCAaacaaggagctggt
ggaaAAATCCGTGTCCCTGCAAAAGGAGAACCATAAGCTCAAGGAAGACG
TGCGCCGCCTCTCGGATATGATCCGGGAACGAGAAGAGGAATACAACCAG
ATCTTGGCGCGTGCAGAATTCGACCgtgctctctctccccctctttcctc
ctcctccacctatGCCTTgacggccctccctcccatcccctcctccagcc
ctcctctgccgcccgTCGTTGCTTCGCccgagaaaaggaggcagggttaa
ggaatggaggagagaccGAGCCAGTGGGAAGAACGGCTGGAGTGAGGAAC
GGCGATATTGGATCTTGGGAAATCCTTCCAGGATGTCAGGCTTCGTCAGA
AATTTTGCCTAGAAAAAAAACGAGCAGCTTGAAAGTAAACGGATTGAAAC
TGGGAGGGATACGACCAGCGTAGCGTGTGTACATATACCACAGATGATGC
TCAGTGCGTCGAGGCATAGATCAAGGGAAACGGGCATTGttggaagaaaa
tgcaaCGCTTTTTCGTAGAAACTTAATGGCGGGACAAAGACATAAAGGAG
GCTTTTCGCAAAGATTGAATGTATGCTCTTATCCCTCTAAGGC
back to top

Coding sequence (CDS) from alignment at CM002462.1:111198..113790+

>rna3809 ID=rna3809|Name=rna3809|organism=Nannochloropsis gaditana|type=CDS|length=1323bp|location=Sequence derived from alignment at CM002462.1:111198..113790+ (Nannochloropsis gaditana)
gagggggcaggggagggcggggcagggaggctcGGATCGCTTTCTACGag
caaagggaggcggacctCGGCGTTGGGACTGtcgcattcctccctccagc
cctcttTCGctacctcgccctctttgGAGGCGTCTGcagaggtggtgggg
gcggggggcgggtgggaggaaggagagtaCAACGACCTGGACGTCTCGGT
GGACCTTGTAGACGAGGAGCAGCCCCTCTTGAGTCGAGGAGACCGGCTGC
AGCGCCGGCGCGCCGAGGTCGAGAAATTGGTGCAGCGATGCCAGGGTTac
cgcgtccttctccaagagggcgtgggggtggAAGTCATggaggtcctcct
ccctccttcccctgctcctccttcctccccctcccaccccttccctccct
ccctccctccttcctgcacGTTCCACCCGGTAAAGATGCGGGTGGAAGGC
CTCctgtccccttcccgcctgtCCGACCCCGATCCTAcgtcccccctcgc
cctccccatcggCAACGAGGACCTGGTCAAGGCGCGCTTGGTgtgggagg
acgacaaaCACCACCCGAGCAAACGTGGGAGTTTCTTCCAAAGCCTCGGG
TGGGGTCGGACGCGGCGCATGAGCAGTTTGGGAACCACCACGGCATCTCT
GGGACCAGGGGCACAGGCGGTGCCCGATGCCATCCATTTGACTGAGTTGT
ACGGCGTGGTGCGGGGCTTGCGCCGTATCCGTCCCAAGGCAGTGtacttg
gcggcggcggcggctgtgatggcggccgcggagggggaggcaggggggcg
agggagggatggaacaCAGCCGACTCTTAACCCTGACAACCCTCCAACTT
CCGCAAAAACCACGACGCGGGTTGGTCTTGCGCTTTCCTCGGCGGGAAGA
TCGGAACGCGTTTTTGGACGGCCTGCGCAAGTGCCTGGGAGACCTCTTAC
AGGTCGATTTGTCTCCGGCCACcttggaggggttgggggagggagggggg
gagggacggggggaggtcTCCGTTTGGGCGAAGTTGCTGCGGGAGCGGGC
CAAGGCGAGGCCGGCGTTTgtccgggagggggaggaaggggcagaaggcg
ggaaggagggagaggacggggcgctCTACGTGTCCCTGGCCGATGCCCAA
GCCGTGCTTGgcgcggagaggagggaaatcaAACGGACGTTTGGGCTCTT
GCTGGACACGGAATTCGACGTGAACGGACTCGAGGACGAGAACAGAGGGC
TGCGGGCGGAGGTGACGAGGCTGGCGTTGACtttgaaagggaaagacacG
GAGTTGGAGAGGGCGCACCATGA
back to top
Synonyms
Publications