rna3808, rna3808 (mRNA) Nannochloropsis gaditana

Overview
Namerna3808
Unique Namerna3808
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length682
Alignment locationCM002462.1:108395..109809 +

Link to JBrowse

Properties
Property NameValue
ProductMyosin head, motor domain protein
Orig transcript idgnl|cribi|Naga_101918g1.3018.mrna
Orig protein idgnl|cribi|Naga_101918g1.3018
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:108395..109809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101918g1gene3666Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3808rna3808-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26874.1cds3799Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3808 ID=rna3808|Name=rna3808|organism=Nannochloropsis gaditana|type=mRNA|length=682bp
CTTGTGCGTGTGAAAAGCGAAGTGGTACGTGTACCAATCATTTATTTCCA
TTTTTCTGTCATTCTTCTGATACGCATCAGATTAAGAGAGGCCAAGGATG
CTGAACGCAGAAGAAACTAAAACTTCCGGGGCGGCGGATGCTTCCCACGG
AGGCAAAAAGGCAAACACTACATCAACCAAGGTCAATCAAGTGAGCTGGT
TACAGCGCCTGCGGAGGGAGGGTTGCTTGCCTCTCAAAACTGTTGGGTTT
TTAACCGGCTTGGCGCTCACGGTCATCGCCTGCCTGACATTTGCTGCGAA
GTTATTGGATTTGAATGTGGTGGGCGCGATCAATCAGGTTTGGTTGGCGA
TCTTCGGGCTGATCATGATGCTTCTAGAAGCTTCTTCGAGCACCAACTTC
CTGTCCCAGCGGGTCTCGCGCTGGTTAAATGAGAATATGAAGATCCTCAC
ATACATGACTGGCCGAGGTCTATTTTATATTTTTGTTGGCACGCTCGAGC
TGGGTTTCTGGTTCTCCACCCTACACCTCGTGATTGGCATTATCCTCTGC
TCCTTGGGTGGCGTGACCATCTTCGTGGGCTGGGCGCTGGGCATGAAACT
CCGCTCCCTTCGGCGCGACATGGCCCAGGAGGATGACGCGCGCAGGGTGA
GTCAGAGAGCACCCTGACCCCCTCTCCCACCC
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protein sequence of rna3808

>rna3808-protein ID=rna3808-protein|Name=rna3808|organism=Nannochloropsis gaditana|type=polypeptide|length=231bp
PPSLPLSRQVTHLFGVRHYAGEVAYNTQGFLDKNRDTLPKETAALFLSSD
SSFVQSLFKGSPPTGAGAASTPSSAASSPLRRSASHTGAGGRGGGGGTPS
SSLTSLSVSSQFKQQLLELMSKVHRTRPHYIRCLKPNDKNVPDTFNRFRI
TEQLRYGGVLEAVRVARSGYPVRLVHSEFYARYRCLAVALALPPSRSPSL
PHVIDAVRDPLKTREWCWRVLDAILENQVGR
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mRNA from alignment at CM002462.1:108395..109809+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3808 ID=rna3808|Name=rna3808|organism=Nannochloropsis gaditana|type=mRNA|length=1415bp|location=Sequence derived from alignment at CM002462.1:108395..109809+ (Nannochloropsis gaditana)
cctccctccctccctctttcccggcAGGTCACCCACCTCTTTGGTGTCCG
CCACTACGCGGGCGAGGTCGCTTACAACACTCAAGGCTTCTTAGACAAAA
ACCGAGACACCCTTCCCAAGGAGACTGCGGCATTggtaggggaggatggg
agggagggagggagggcagggtgCGGTGTTAGGCTTGCATTGGTCGCGTG
GATCGGAGCACTGCAGAGATCCTATTGATGCATCGGCTGATGTGGTTGTG
ATCTTGCATGTATGCTTACACATGGATGTGTACTAGTTCTCGATGCAGCC
CACGACCTTTCCGGGCGCTCGTGCGACCCCTtcacccttcctccaaactc
cctccctcgccctccctcccctcttccattccttcaAATGCCATCACCGT
CTGGTTCCAATTCCCCCTGACCGTGCCAtcgccccctctctctccacttC
CACCCCATGCCTCACTCCACCCCCGCAGTTCCTCTCTTCGGACTCCTCCT
TCGTGCAAAGCCTCTTCAAGGGCAGCCCTCCCACGGGGGCCGGAGCGGCC
TCCACCCCatcctctgccgcctcctcgcccctcagGCGGTCCGCTTCACA
tacaggagcgggagggaggggcggaggaggaggtaccccttcctcctctt
taaCCTCCCTGTCTGTTTCCAGCCAATTTAAGCAGCAGGTCAGCATCctt
tctcccactcctccctcctatattcccctccccttttcctctctttcctg
ttcTGCTCTTTCTGGTTGTCCTACCTTGTCCTACCACGGACCTTCTGACT
CCTccggccctttcccttttccttccttttctccctccctccctccctcc
ctccctcccttcctcccaccgtTCACCGCCTCCTGTCTCAGCTCCTAGAA
CTAATGTCGAAAGTCCACCGGACGCGGCCCCACTACATCCGTTGCCTGAA
ACCCAACGACAAGAACGTGCCCGACACCTTCAACCGATTTCGGtagtcag
ggagggagggagggcgagagggagggaggggcggaatAGGGGAAATAATA
TTCTCTTCTCCTGGGGAAGCAGTTACCCGGGtatgccctctctcccgtcg
tgactttctcccctccctccctccctccctccctccccttctcccccctc
ctccctctcccttaGCATCACGGAGCAACTGCGCTACGGTGGTGTCTTGG
AGGCCGTGCGTGTGGCAAGATCCGGGTATCCTGTCCGCCTGGTGCACAGC
GAGTTCTACGCCCGCTACCGGTgcctggccgtggccctcgccctccctcc
ttcccgttccccctcccttccgcacGTGATCGACGCGGTGCGGGACCCTC
TGAAGACGCGAGAATGGTGCTGGCGGGTGTTGGATGCGATTTTGGAGAAC
CAGGTCGGGCGATAG
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Coding sequence (CDS) from alignment at CM002462.1:108395..109809+

>rna3808 ID=rna3808|Name=rna3808|organism=Nannochloropsis gaditana|type=CDS|length=2784bp|location=Sequence derived from alignment at CM002462.1:108395..109809+ (Nannochloropsis gaditana)
cctccctccctccctctttcccggcAGGTCACCCACCTCTTTGGTGTCCG
CCACTACGCGGGCGAGGTCGCTTACAACACTCAAGGCTTCTTAGACAAAA
ACCGAGACACCCTTCCCAAGGAGACTGCGGCATTgTTCCTCTCTTCGGAC
TCCTCCTTCGTGCAAAGCCTCTTCAAGGGCAGCCCTCCCACGGGGGCCGG
AGCGGCCTCCACCCCatcctctgccgcctcctcgcccctcagGCGGTCCG
CTTCACAtacaggagcgggagggaggggcggaggaggaggtaccccttcc
tcctctttaaCCTCCCTGTCTGTTTCCAGCCAATTTAAGCAGCAGCTCCT
AGAACTAATGTCGAAAGTCCACCGGACGCGGCCCCACTACATCCGTTGCC
TGAAACCCAACGACAAGAACGTGCCCGACACCTTCAACCGATTTCGCATC
ACGGAGCAACTGCGCTACGGTGGTGTCTTGGAGGCCGTGCGTGTGGCAAG
ATCCGGGTATCCTGTCCGCCTGGTGCACAGCGAGTTCTACGCCCGCTACC
GGTgcctggccgtggccctcgccctccctccttcccgttccccctccctt
ccgcacGTGATCGACGCGGTGCGGGACCCTCTGAAGACGCGAGAATGGTG
CTGGCGGGTGTTGGATGCGATTTTGGAGAACCAGGTCGGGCGATAGcctc
cctccctccctctttcccggcAGGTCACCCACCTCTTTGGTGTCCGCCAC
TACGCGGGCGAGGTCGCTTACAACACTCAAGGCTTCTTAGACAAAAACCG
AGACACCCTTCCCAAGGAGACTGCGGCATTgTTCCTCTCTTCGGACTCCT
CCTTCGTGCAAAGCCTCTTCAAGGGCAGCCCTCCCACGGGGGCCGGAGCG
GCCTCCACCCCatcctctgccgcctcctcgcccctcagGCGGTCCGCTTC
ACAtacaggagcgggagggaggggcggaggaggaggtaccccttcctcct
ctttaaCCTCCCTGTCTGTTTCCAGCCAATTTAAGCAGCAGCTCCTAGAA
CTAATGTCGAAAGTCCACCGGACGCGGCCCCACTACATCCGTTGCCTGAA
ACCCAACGACAAGAACGTGCCCGACACCTTCAACCGATTTCGCATCACGG
AGCAACTGCGCTACGGTGGTGTCTTGGAGGCCGTGCGTGTGGCAAGATCC
GGGTATCCTGTCCGCCTGGTGCACAGCGAGTTCTACGCCCGCTACCGGTg
cctggccgtggccctcgccctccctccttcccgttccccctcccttccgc
acGTGATCGACGCGGTGCGGGACCCTCTGAAGACGCGAGAATGGTGCTGG
CGGGTGTTGGATGCGATTTTGGAGAACCAGGTCGGGCGATAGcctccctc
cctccctctttcccggcAGGTCACCCACCTCTTTGGTGTCCGCCACTACG
CGGGCGAGGTCGCTTACAACACTCAAGGCTTCTTAGACAAAAACCGAGAC
ACCCTTCCCAAGGAGACTGCGGCATTgTTCCTCTCTTCGGACTCCTCCTT
CGTGCAAAGCCTCTTCAAGGGCAGCCCTCCCACGGGGGCCGGAGCGGCCT
CCACCCCatcctctgccgcctcctcgcccctcagGCGGTCCGCTTCACAt
acaggagcgggagggaggggcggaggaggaggtaccccttcctcctcttt
aaCCTCCCTGTCTGTTTCCAGCCAATTTAAGCAGCAGCTCCTAGAACTAA
TGTCGAAAGTCCACCGGACGCGGCCCCACTACATCCGTTGCCTGAAACCC
AACGACAAGAACGTGCCCGACACCTTCAACCGATTTCGCATCACGGAGCA
ACTGCGCTACGGTGGTGTCTTGGAGGCCGTGCGTGTGGCAAGATCCGGGT
ATCCTGTCCGCCTGGTGCACAGCGAGTTCTACGCCCGCTACCGGTgcctg
gccgtggccctcgccctccctccttcccgttccccctcccttccgcacGT
GATCGACGCGGTGCGGGACCCTCTGAAGACGCGAGAATGGTGCTGGCGGG
TGTTGGATGCGATTTTGGAGAACCAGGTCGGGCGATAGcctccctccctc
cctctttcccggcAGGTCACCCACCTCTTTGGTGTCCGCCACTACGCGGG
CGAGGTCGCTTACAACACTCAAGGCTTCTTAGACAAAAACCGAGACACCC
TTCCCAAGGAGACTGCGGCATTgTTCCTCTCTTCGGACTCCTCCTTCGTG
CAAAGCCTCTTCAAGGGCAGCCCTCCCACGGGGGCCGGAGCGGCCTCCAC
CCCatcctctgccgcctcctcgcccctcagGCGGTCCGCTTCACAtacag
gagcgggagggaggggcggaggaggaggtaccccttcctcctctttaaCC
TCCCTGTCTGTTTCCAGCCAATTTAAGCAGCAGCTCCTAGAACTAATGTC
GAAAGTCCACCGGACGCGGCCCCACTACATCCGTTGCCTGAAACCCAACG
ACAAGAACGTGCCCGACACCTTCAACCGATTTCGCATCACGGAGCAACTG
CGCTACGGTGGTGTCTTGGAGGCCGTGCGTGTGGCAAGATCCGGGTATCC
TGTCCGCCTGGTGCACAGCGAGTTCTACGCCCGCTACCGGTgcctggccg
tggccctcgccctccctccttcccgttccccctcccttccgcacGTGATC
GACGCGGTGCGGGACCCTCTGAAGACGCGAGAATGGTGCTGGCGGGTGTT
GGATGCGATTTTGGAGAACCAGGTCGGGCGATAG
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Synonyms
Publications