EWM26874.1, cds3799 (CDS) Nannochloropsis gaditana

Overview
NameEWM26874.1
Unique Namecds3799
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:108395..108529 +
Alignment locationCM002462.1:108873..109082 +
Alignment locationCM002462.1:109286..109386 +
Alignment locationCM002462.1:109560..109809 +

Link to JBrowse

Properties
Property NameValue
Start range108395
Start range.
Protein idEWM26874.1
ProductMyosin head, motor domain protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101918g1.3018.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:108395..108529 +
CM002462.1supercontigCM002462.1:108873..109082 +
CM002462.1supercontigCM002462.1:109286..109386 +
CM002462.1supercontigCM002462.1:109560..109809 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0000166nucleotide binding
GO:0003774motor activity
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005856cytoskeleton
GO:0016459myosin complex
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR001609Myosin_head_motor_dom
Homology
BLAST of EWM26874.1 vs. NCBI_GenBank
Match: gi|585108980|gb|EWM26874.1| (Myosin head, motor domain protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 470.7 bits (1210), Expect = 8.336e-168
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0
Query:    1 PPSLPLSRQVTHLFGVRHYAGEVAYNTQGFLDKNRDTLPKETAALFLSSDSSFVQSLFKGSPPTGAGAASTPSSAASSPLRRSASHTGAGGRGGGGGTPSSSLTSLSVSSQFKQQLLELMSKVHRTRPHYIRCLKPNDKNVPDTFNRFRITEQLRYGGVLEAVRVARSGYPVRLVHSEFYARYRCLAVALALPPSRSPSLPHVIDAVRDPLKTREWCWRVLDAILENQVGR 231
            PPSLPLSRQVTHLFGVRHYAGEVAYNTQGFLDKNRDTLPKETAALFLSSDSSFVQSLFKGSPPTGAGAASTPSSAASSPLRRSASHTGAGGRGGGGGTPSSSLTSLSVSSQFKQQLLELMSKVHRTRPHYIRCLKPNDKNVPDTFNRFRITEQLRYGGVLEAVRVARSGYPVRLVHSEFYARYRCLAVALALPPSRSPSLPHVIDAVRDPLKTREWCWRVLDAILENQVGR
Sbjct:    1 PPSLPLSRQVTHLFGVRHYAGEVAYNTQGFLDKNRDTLPKETAALFLSSDSSFVQSLFKGSPPTGAGAASTPSSAASSPLRRSASHTGAGGRGGGGGTPSSSLTSLSVSSQFKQQLLELMSKVHRTRPHYIRCLKPNDKNVPDTFNRFRITEQLRYGGVLEAVRVARSGYPVRLVHSEFYARYRCLAVALALPPSRSPSLPHVIDAVRDPLKTREWCWRVLDAILENQVGR 231          
BLAST of EWM26874.1 vs. NCBI_GenBank
Match: gi|299117468|emb|CBN73971.1| (myosin II heavy chain [Ectocarpus siliculosus])

HSP 1 Score: 172.17 bits (435), Expect = 1.425e-45
Identity = 87/173 (50.29%), Postives = 108/173 (62.43%), Query Frame = 0
Query:   14 FGVRHYAGEVAYNTQGFLDKNRDTLPKETAALFLSSDSSFVQSLFKGSPPTGAGAASTPSSAASSPLRRSASHTGAGGRGGGGGTPSSSLTSLSVSSQFKQQLLELMSKVHRTRPHYIRCLKPNDKNVPDTFNRFRITEQLRYGGVLEAVRVARSGYPVRLVHSEFYARYRCL 186
            F ++HYAG+V YN   F DKN+D LP E+  LF SS + FV +LF    PTG   A +      SP + S S   +        +P  +    +V +QF+ QL +LM  +  TRPHYIRC+KPND   PD  +R R+ EQLRYGGVLEAVRVARSGYPVRL H +FY RYRCL
Sbjct:  583 FAIKHYAGQVRYNVHTFCDKNKDELPNESDVLFASSTNEFVVNLFS---PTGGKKARSKGKRPISPGQSSTSTNTSKK-----DSPGFAGLKPTVGTQFRGQLHDLMDMIRDTRPHYIRCIKPNDNAEPDEVSRVRVMEQLRYGGVLEAVRVARSGYPVRLPHKDFYVRYRCL 747          
BLAST of EWM26874.1 vs. NCBI_GenBank
Match: gi|299117465|emb|CBN73968.1| (myosin D [Ectocarpus siliculosus])

HSP 1 Score: 159.458 bits (402), Expect = 4.527e-41
Identity = 86/173 (49.71%), Postives = 103/173 (59.54%), Query Frame = 0
Query:   14 FGVRHYAGEVAYNTQGFLDKNRDTLPKETAALFLSSDSSFVQSLFKGSPPTGAGAASTPSSAASSPLRRSASHTGAGGRGGGGGTPSSSLTSLSVSSQFKQQLLELMSKVHRTRPHYIRCLKPNDKNVPDTFNRFRITEQLRYGGVLEAVRVARSGYPVRLVHSEFYARYRCL 186
            F V+HYAG+V Y+ + F DKN+D LPKE+  LF SS + FV +LF  +    A       +A       S         G  G  P+       V +QFK QL  LM  +  TRPHYIRC+KPND   PD  +R R+ EQLRYGGVLEAVRVARSGYPVRL H +FY RYRCL
Sbjct:  584 FAVKHYAGQVEYHVETFCDKNKDELPKESDELFASSTNDFVVNLFAPAGAKKAKTKGKKPAAPKPKKDAS---------GVAGLKPT-------VGTQFKDQLHNLMDMIKDTRPHYIRCIKPNDNAEPDEVSRVRVMEQLRYGGVLEAVRVARSGYPVRLPHKDFYTRYRCL 740          
BLAST of EWM26874.1 vs. NCBI_GenBank
Match: gi|239925819|gb|ACS35544.1| (myosin H [Phaeodactylum tricornutum])

HSP 1 Score: 146.362 bits (368), Expect = 1.448e-36
Identity = 85/183 (46.45%), Postives = 109/183 (59.56%), Query Frame = 0
Query:    9 QVTHL-FGVRHYAGEVAYNTQGFLDKNRDTLPKETAALFLSSDSSFVQSL---FKGSPPTGAGAASTPSSAASSPLRRSASHTGAGGRGGGGGTPSSSLTSLSVSSQFKQQLLELMSKVHRTRPHYIRCLKPNDKNVPDTFNRFRITEQLRYGGVLEAVRVARSGYPVRLVHSEFYARYRCLA 187
            Q  HL F V HYAG V Y  +GF +KNRD LP  T  LFLSS+S+FVQ L    + +P + A A    S+ +    +RS S  G                  +V+ QF++QL +L SK+ +T PHYIRCLKPND  +PD F+   + EQLR GG+LEAVRVAR+G+     HS+FY RYR LA
Sbjct:  752 QKAHLQFAVHHYAGPVTYTAKGFTEKNRDELPTSTRTLFLSSESTFVQQLAHILEWAPNSNASA----SAFSVRSFQRSDSTVGRP----------------TVAGQFQRQLKKLRSKIDQTSPHYIRCLKPNDCLLPDKFDVAVVAEQLRCGGILEAVRVARAGFTQHYPHSDFYRRYRVLA 914          
BLAST of EWM26874.1 vs. NCBI_GenBank
Match: gi|219129131|ref|XP_002184750.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403859|gb|EEC43809.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 145.591 bits (366), Expect = 2.420e-36
Identity = 86/183 (46.99%), Postives = 110/183 (60.11%), Query Frame = 0
Query:    9 QVTHL-FGVRHYAGEVAYNTQGFLDKNRDTLPKETAALFLSSDSSFVQSL---FKGSPPTGAGAASTPSSAASSPLRRSASHTGAGGRGGGGGTPSSSLTSLSVSSQFKQQLLELMSKVHRTRPHYIRCLKPNDKNVPDTFNRFRITEQLRYGGVLEAVRVARSGYPVRLVHSEFYARYRCLA 187
            Q  HL F V HYAG V Y  +GF +KNRD LP  T  LFLSS+S+FVQ L    + +P + A A    S+ +    +RS S  G          P+       V+ QF++QL +L SK+ +T PHYIRCLKPND  +PD F+   + EQLR GG+LEAVRVAR+G+     HS+FY RYR LA
Sbjct:  517 QKAHLQFAVHHYAGPVTYTAKGFTEKNRDELPTSTRTLFLSSESTFVQQLAHILEWAPNSNASA----SAFSVRSFQRSDSTVG---------RPT-------VAGQFQRQLKKLRSKIDQTSPHYIRCLKPNDCLLPDKFDVAVVAEQLRCGGILEAVRVARAGFTQHYPHSDFYRRYRVLA 679          
BLAST of EWM26874.1 vs. NCBI_GenBank
Match: gi|673023740|ref|XP_008865831.1| (hypothetical protein H310_03651 [Aphanomyces invadans] >gi|574479059|gb|ETW06054.1| hypothetical protein H310_03651 [Aphanomyces invadans])

HSP 1 Score: 145.591 bits (366), Expect = 2.592e-36
Identity = 79/184 (42.93%), Postives = 104/184 (56.52%), Query Frame = 0
Query:   14 FGVRHYAGEVAYNTQGFLDKNRDTLPKETAALFLSSDSSFVQSLFKGSPPTGAGAASTPSSAASSPLRRSASHTGAGGRGGGGGTPSSSLTSLSVSSQFKQQLLELMSKVHRTRPHYIRCLKPNDKNVPDTFNRFRITEQLRYGGVLEAVRVARSGYPVRLVHSEFYARYRCLAVALALPPSRS 197
            F V HYAG V Y+  GFLDKN+D L      L  +S+S  +  ++  +           S   ++  RR+A H              SS+ S++V+ QFK QL EL++ + +T PHY+RCLKPND N P TF+R R+ EQLR GGVLEAV+VAR+G+PVRL H EF   Y  L   L  P  R 
Sbjct:  589 FTVLHYAGPVNYSVDGFLDKNKDALLDSLVELLQNSESFILHDIYHAA-----------SKQTATTKRRAALH--------------SSIGSVNVAEQFKAQLTELVATIEKTAPHYVRCLKPNDANRPHTFDRVRMVEQLRSGGVLEAVKVARAGFPVRLTHKEFRVGYGRLVAPLTTPSIRD 747          
BLAST of EWM26874.1 vs. NCBI_GenBank
Match: gi|813125413|ref|XP_012196702.1| (hypothetical protein SPRG_02722 [Saprolegnia parasitica CBS 223.65] >gi|641538413|gb|KDO32244.1| hypothetical protein SPRG_02722 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 144.436 bits (363), Expect = 6.229e-36
Identity = 75/180 (41.67%), Postives = 103/180 (57.22%), Query Frame = 0
Query:    7 SRQVTHLFGVRHYAGEVAYNTQGFLDKNRDTLPKETAALFLSSDSSFVQSLFKGSPPTGAGAASTPSSAASSPLRRSASHTGAGGRGGGGGTPSSSLTSLSVSSQFKQQLLELMSKVHRTRPHYIRCLKPNDKNVPDTFNRFRITEQLRYGGVLEAVRVARSGYPVRLVHSEFYARYRCL 186
            + +  H+F ++HYAG VAY T GF +KN+DTL  E A L   S ++F+++L K   P        P++A  +  R+            GG     +    SV + F+ QL  LM+ +  T   Y+RCLKPNDKN    FN  RI +QL+ GGVLEAVRV R+GYPVR+ H++F  RYR L
Sbjct:  572 TEKANHIFAIQHYAGWVAYETYGFCEKNKDTLHSELALLVKHSGNAFLRTLVKDETPA-------PTTAKHNKQRQ------------GGILKKGAAAKTSVGTHFRTQLRSLMTTIQSTSCSYVRCLKPNDKNTKGLFNAQRICDQLKAGGVLEAVRVNRAGYPVRITHAQFIKRYRSL 732          
BLAST of EWM26874.1 vs. NCBI_GenBank
Match: gi|669169429|ref|XP_008620063.1| (hypothetical protein SDRG_15662 [Saprolegnia diclina VS20] >gi|530728242|gb|EQC26484.1| hypothetical protein SDRG_15662 [Saprolegnia diclina VS20])

HSP 1 Score: 141.354 bits (355), Expect = 8.063e-35
Identity = 75/180 (41.67%), Postives = 98/180 (54.44%), Query Frame = 0
Query:    7 SRQVTHLFGVRHYAGEVAYNTQGFLDKNRDTLPKETAALFLSSDSSFVQSLFKGSPPTGAGAASTPSSAASSPLRRSASHTGAGGRGGGGGTPSSSLTSLSVSSQFKQQLLELMSKVHRTRPHYIRCLKPNDKNVPDTFNRFRITEQLRYGGVLEAVRVARSGYPVRLVHSEFYARYRCL 186
            + +  H+F ++HYAG VAY T GF +KN+DTL  E   L   S ++F++ L K   P    A            +    H G   +G    T        SV + F+ QL  LMS +  T   Y+RCLKPNDKN    FN  RI +QL+ GGVLEAVRV R+GYPVR+ H++F  RYR L
Sbjct:  572 TEKANHIFAIQHYAGWVAYETYGFCEKNKDTLHSELTLLIKHSGNAFLRKLVKDETPAPVVA------------KNKQRHGGLLKKGAAAKT--------SVGTHFRTQLRSLMSTIQSTSCSYVRCLKPNDKNTKGLFNAQRICDQLKAGGVLEAVRVNRAGYPVRITHAQFIKRYRSL 731          
BLAST of EWM26874.1 vs. NCBI_GenBank
Match: gi|698824461|ref|XP_009845259.1| (hypothetical protein H257_17978 [Aphanomyces astaci] >gi|574099655|gb|ETV65258.1| hypothetical protein H257_17978 [Aphanomyces astaci])

HSP 1 Score: 141.354 bits (355), Expect = 8.902e-35
Identity = 87/207 (42.03%), Postives = 116/207 (56.04%), Query Frame = 0
Query:    9 QVTHLFGVRHYAGEVAYNTQGFLDKNRDTLPKETAALFLSSDSSFVQSLFKGSPPTGAGAASTPSSAASSPLRRSASHTGAGGRGGGGG-TPSS---SLTSLSVSSQFKQQLLELMSKVHRTRPHYIRCLKPNDKNVPDTFNRFRITEQLRYGGVLEAVRVARSGYPVRLVHSEFYARYRCLAVALALPPSRSPSLPHVIDAVRDPL 211
            +  H+F + HYAG V+Y+T GF DKN+DTL  E AAL   S   F++++        +  A +PS+A S+             RGG    +PSS   S  S SV S F++QL +LM  V  T+  Y+RCLKPNDKN P  F+  RI +QL  GGVLEAVRV R+G+PVR+ H++F  RYR        P +    L H+ D   D L
Sbjct:  588 RANHMFAIHHYAGWVSYHTFGFCDKNKDTLHAEIAALVRHSSFGFLRTI-------SSSKADSPSAARST-------------RGGILKPSPSSMAISKASASVGSTFRRQLKQLMDTVQHTQCAYVRCLKPNDKNKPTVFDFRRICDQLEAGGVLEAVRVNRAGFPVRITHAQFVKRYR--------PLTPGGMLKHIPDTCGDEL 766          
BLAST of EWM26874.1 vs. NCBI_GenBank
Match: gi|698824481|ref|XP_009845269.1| (hypothetical protein H257_17982 [Aphanomyces astaci] >gi|574099665|gb|ETV65268.1| hypothetical protein H257_17982 [Aphanomyces astaci])

HSP 1 Score: 140.969 bits (354), Expect = 1.139e-34
Identity = 87/205 (42.44%), Postives = 115/205 (56.10%), Query Frame = 0
Query:   11 THLFGVRHYAGEVAYNTQGFLDKNRDTLPKETAALFLSSDSSFVQSLFKGSPPTGAGAASTPSSAASSPLRRSASHTGAGGRGGGGG-TPSS---SLTSLSVSSQFKQQLLELMSKVHRTRPHYIRCLKPNDKNVPDTFNRFRITEQLRYGGVLEAVRVARSGYPVRLVHSEFYARYRCLAVALALPPSRSPSLPHVIDAVRDPL 211
             H+F + HYAG V+Y+T GF DKN+DTL  E AAL   S   F++++        +  A +PS+A S+             RGG    +PSS   S  S SV S F++QL +LM  V  T+  Y+RCLKPNDKN P  F+  RI +QL  GGVLEAVRV R+G+PVR+ H++F  RYR        P +    L H+ D   D L
Sbjct:  590 NHMFAIHHYAGWVSYHTFGFCDKNKDTLHAEIAALVRHSSFGFLRTI-------SSSKADSPSAARST-------------RGGILKPSPSSMAISKASASVGSTFRRQLKQLMDTVQHTQCAYVRCLKPNDKNKPTVFDFRRICDQLEAGGVLEAVRVNRAGFPVRITHAQFVKRYR--------PLTPGGMLKHIPDTCGDEL 766          
The following BLAST results are available for this feature:
BLAST of EWM26874.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108980|gb|EWM26874.1|8.336e-168100.00Myosin head, motor domain protein, partial [Nannoc... [more]
gi|299117468|emb|CBN73971.1|1.425e-4550.29myosin II heavy chain [Ectocarpus siliculosus][more]
gi|299117465|emb|CBN73968.1|4.527e-4149.71myosin D [Ectocarpus siliculosus][more]
gi|239925819|gb|ACS35544.1|1.448e-3646.45myosin H [Phaeodactylum tricornutum][more]
gi|219129131|ref|XP_002184750.1|2.420e-3646.99predicted protein, partial [Phaeodactylum tricornu... [more]
gi|673023740|ref|XP_008865831.1|2.592e-3642.93hypothetical protein H310_03651 [Aphanomyces invad... [more]
gi|813125413|ref|XP_012196702.1|6.229e-3641.67hypothetical protein SPRG_02722 [Saprolegnia paras... [more]
gi|669169429|ref|XP_008620063.1|8.063e-3541.67hypothetical protein SDRG_15662 [Saprolegnia dicli... [more]
gi|698824461|ref|XP_009845259.1|8.902e-3542.03hypothetical protein H257_17978 [Aphanomyces astac... [more]
gi|698824481|ref|XP_009845269.1|1.139e-3442.44hypothetical protein H257_17982 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3808rna3808Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications