rna3806, rna3806 (mRNA) Nannochloropsis gaditana

Overview
Namerna3806
Unique Namerna3806
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length898
Alignment locationCM002462.1:99800..100645 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100576g2.2312.mrna
Orig protein idgnl|cribi|Naga_100576g2.2312
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:99800..100645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100576g2gene3664Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3806rna3806-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26876.1cds3797Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3806 ID=rna3806|Name=rna3806|organism=Nannochloropsis gaditana|type=mRNA|length=898bp
TGTGTTTTGGCTGTGCCCCATGGGCATGTCGACGCAAGGTGTTGTGGACG
GTAGAATTCTCGCTCAACAATCGACTCCTCACATTTATCTGACACATGGC
GCGCTAATTTCGCACAGAGGCCTTCCCAGCAGCATCCTTGCGTTTGTCAT
GGTCCTCTTCGGTGGTCGCGGAGGTGGCGCCGGCCGCGGCGCTGTGTCAG
GTCCTGCTCCAAGCTCTACCCTGTCGGACCGCTTCGACCGACTGCACGTA
AAATCTACGGCCGCTTTCACGGGCGGGGGACGGGACGTTCGACGTACTCA
GGTCCAGATGACGCAGCAGCAGAAACGGAATGCCGCTCAAGCCGCATTTC
GAGGTCAGACTGTTCAGGTGGTTTTACCCAAACAGCAGTTACAACGGGGA
GGAATACGCGTGGGGGGGAGGGGCGTGGGCGGGAGTCGAGGCGTTGCAGG
TGTCGCGAGCCGAGCGGGAGGAGGGCGTGGCGGGGTACGAGGACGGGGGG
GCCGCGGGGCTGGGCGAGGGAGGGGGGGAGGGCGGGGTCGAGGGCGTGGG
GCAGGTCGAGGAGGAGGAAGGGGGGGAGGGAAGAAAGTGGGCAAGGAGGA
TTTGGACGCGGAGATGGACGAGTATCATTTCAAGGCGGGAAAAGGACCGG
ACCCCAAGATCGCGCAGGCGGAGCGGAAAAAGGCGTCATTGGACACGGAG
ATGGACTCGTATTGGGAGGCAAAGGAAAAAGCAGCGGCCGGCGCGGGGGC
TGGCACTGCCACGGAGACCGAGCGGGAGAGCATTGAGAGAGGAAGCAAGG
TGTCCCGTGGTGGGAGTGGAATTATACCACAGGAATGGTTGCTACCTGGC
GTGAGAACATCGAAGAATGATGTCCCGAGGCCCCTCTTGTCGTTGTGA
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protein sequence of rna3806

>rna3806-protein ID=rna3806-protein|Name=rna3806|organism=Nannochloropsis gaditana|type=polypeptide|length=281bp
MARCFVDCTGPAISPSPSKLVFLTIMLCFVTSFALQRHDPTLSVSCSASS
PPSSSSSPTNSAQSSPFPPPSLPRVRGPRELGRMLEEEKTRALAQEREAD
ERRFQFETEMDAEGIRRPRDRKLSFTPAPAFLSSSHVRERPGGKGSADTK
ARMNIEPMATGGMAAAEEEGELAIDRHMLRKAYEVRRAQVESLSRFQSKR
KRHGRQSGQVGAQGRIVGGDGEKKMGEGFLLMGGGRGEGRGGKGPISISQ
RHHRTYFSNAHRIRRGRHSFVYASSFRTGPL
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mRNA from alignment at CM002462.1:99800..100645+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3806 ID=rna3806|Name=rna3806|organism=Nannochloropsis gaditana|type=mRNA|length=846bp|location=Sequence derived from alignment at CM002462.1:99800..100645+ (Nannochloropsis gaditana)
ATGGCACGCTGTTTTGTGGACTGCACAGGTCCGGCaatctccccctctcc
cagcaAGCTTGTCTTCCTTACCATCATGCTCTGCTTCGTCACATCCTTCG
CCCTACAAAGGCATGACCCAACATTGTCGGTGTCCTGCTCGGcctcgtcg
ccgccgtcctcttcctcctccccaacAAACTCCGCTCAATCctccccatt
tcctcctccctctcttcctcgagTACGGGGTCCGCGTGAGTTAGGACGTA
TGttagaagaggaaaagacgcGCGCATTGGCGCAAGAACGAGAAGCAGAC
GAACGACGTTTCCAATTCGAAACAGAAATGGACGCTGAAGGCATCCGCCG
CCCGCGAGACCGCAAGCTTTCCTTTACAccggcccccgccttcctgtcct
cctcccacgtccGGGAACGACCTGGTGGGAAAGGCAGCGCAGATACAAAA
GCAAGAATGAACATAGAGCCTATGGCGACTGGTGGAATggcggcagcgga
ggaggagggagaactGGCAATTGACCGACACATGCTGCGTAAGGCATACG
AGGTCCGTCGCGCCCAGGTAGAGTCATTGAGTCGTTTTCAATCCAAACGG
AAACGACACGGACGGCAAAGTGGGCAGGTGGGTGCACAGGGAAGAATTGT
GGGAGGTGACGGCGAGAAAAAGATGGGAGAGGGGTTTCTACTCatggggg
gtgggaggggagagggaagaggtgggaagggccCAATATCAATATCTCAA
CGGCATCACCGTACCTATTTTTCCAATGCCCATCGAATAAGACGAGGACG
TCATTCGTTCGTGTACGCGTCAAGTTTCCGGACGGGGCCGCTTTGA
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Coding sequence (CDS) from alignment at CM002462.1:99800..100645+

>rna3806 ID=rna3806|Name=rna3806|organism=Nannochloropsis gaditana|type=CDS|length=846bp|location=Sequence derived from alignment at CM002462.1:99800..100645+ (Nannochloropsis gaditana)
ATGGCACGCTGTTTTGTGGACTGCACAGGTCCGGCaatctccccctctcc
cagcaAGCTTGTCTTCCTTACCATCATGCTCTGCTTCGTCACATCCTTCG
CCCTACAAAGGCATGACCCAACATTGTCGGTGTCCTGCTCGGcctcgtcg
ccgccgtcctcttcctcctccccaacAAACTCCGCTCAATCctccccatt
tcctcctccctctcttcctcgagTACGGGGTCCGCGTGAGTTAGGACGTA
TGttagaagaggaaaagacgcGCGCATTGGCGCAAGAACGAGAAGCAGAC
GAACGACGTTTCCAATTCGAAACAGAAATGGACGCTGAAGGCATCCGCCG
CCCGCGAGACCGCAAGCTTTCCTTTACAccggcccccgccttcctgtcct
cctcccacgtccGGGAACGACCTGGTGGGAAAGGCAGCGCAGATACAAAA
GCAAGAATGAACATAGAGCCTATGGCGACTGGTGGAATggcggcagcgga
ggaggagggagaactGGCAATTGACCGACACATGCTGCGTAAGGCATACG
AGGTCCGTCGCGCCCAGGTAGAGTCATTGAGTCGTTTTCAATCCAAACGG
AAACGACACGGACGGCAAAGTGGGCAGGTGGGTGCACAGGGAAGAATTGT
GGGAGGTGACGGCGAGAAAAAGATGGGAGAGGGGTTTCTACTCatggggg
gtgggaggggagagggaagaggtgggaagggccCAATATCAATATCTCAA
CGGCATCACCGTACCTATTTTTCCAATGCCCATCGAATAAGACGAGGACG
TCATTCGTTCGTGTACGCGTCAAGTTTCCGGACGGGGCCGCTTTGA
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Synonyms
Publications