rna3803, rna3803 (mRNA) Nannochloropsis gaditana

Overview
Namerna3803
Unique Namerna3803
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length883
Alignment locationCM002462.1:93677..94629 +

Link to JBrowse

Properties
Property NameValue
Productnuclear pore complex protein
Orig transcript idgnl|cribi|Naga_101398g1.4397.mrna
Orig protein idgnl|cribi|Naga_101398g1.4397
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:93677..94629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101398g1gene3661Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3803rna3803-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26879.1cds3794Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3803 ID=rna3803|Name=rna3803|organism=Nannochloropsis gaditana|type=mRNA|length=883bp
GAGGGTGGGAGGTTCCGACGTGCTTGCGAGAGGGACTTAAAGATTGTTGG
ACGCACTTTGTTGCGATACCCGTGCTCAAATCGTTTGGCTGCATTCCATG
TGAAGAGAAAAGGAGCATAGGGTGATTCAGGACTGTATCGATCTAGCCGT
GGACTGAGATAGTATTATGTGCCCTCGCATATCTACAGGCGCCGACTTTG
ATTACTGCCTGGCAAACCATCTCTTGGCAACATATGGCGATATCACTTTC
TCCGCCTCCTCCTCCTCCTCCTCCTCCTCAGCCTCTACCTTCACCACTTC
CTCCAACGAGGACAGGAACGTAAAAGGAACGAAGGAGGTGATGGCATTCG
AAGACGAGGAGGATGAGCAGCCATCTTCACCCTCGAGTTCTTCACCTCTC
CACAGCTGCTCCTCGTACACCCTCCTATCCATCGCAGAGCACTTAAAAAA
ACGCATTTCAACAGCGGCTTCCTCCTCTTTTTCCTGTCTTTCGCAAGGCG
GCACCGGGTCCCAGAGCGATTCCTTTGTACAAAACGTAAGCGTGAGCCGA
GATGGCTTTGAAAAGGCATGCAAAGACGTATTTGCCCGAGCCCTTTCTCC
CGTTGACCGTTGCTTGGAAAGCAATGGAATGGGACGGGACGAAATAGACG
AAGTGGTGATGGTAGGGGGGACGACCAGAATACCCAAAATAAGAGAAATG
CTGCGAGCGCACTTGAACGTGGAGAGTTTGAACACACACATAGATCCAGA
CGTGACGGTGGCGGTGGGGGCAGCCTGCGTGGTCGATTAATTCACAGTTG
TGCTGCAGGGAGGTCAACGGCATAAATTACTTTGCCCCCCCGAAAAAAAC
TTGCCGACAAAAACTGAATGACCAATTGACTGA
back to top

protein sequence of rna3803

>rna3803-protein ID=rna3803-protein|Name=rna3803|organism=Nannochloropsis gaditana|type=polypeptide|length=147bp
MRSGDGNGTALLSRRTLPASRGSMRDEKGPGAEEMASTEQARQAVLATIE
EKMRKEGKPEDSRMNYASMSGGGVSGDMPYYIHPWKDPAFGPPVEYQSLR
PFPPAILRTYSLLQAMSFQGLWTEIHRAWITVDNLLYIWDYHTEGKV
back to top

mRNA from alignment at CM002462.1:93677..94629+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3803 ID=rna3803|Name=rna3803|organism=Nannochloropsis gaditana|type=mRNA|length=953bp|location=Sequence derived from alignment at CM002462.1:93677..94629+ (Nannochloropsis gaditana)
GACACAGACAGGTGAGGAAACGTGGACGTCTATAGGATGAGGTCCGGGGA
CGGTAATGGCACCGCGCTGCTTTCCCGTCGAACCCTGCCAGCAAGTCGAG
GAAGCATGAGGGATGAGAAAGGTccgggggcagaggagatggCTTCGACA
GAACAAGCCCGACAAGCGGTGCTGGCGACCATTGAAGAAAAGATgcgaaa
ggaaggaaagccggAAGATGTACGTGTCGAAACagcggaaagggaagggg
aaaggtggTGGCCGGAGGGCACGTTGCTGCCTGCGCCTTTCTAATGCATC
TCTCTCATCCCATGCACGTCGCAGTCTCGCATGAATTATGCCTCGATGTc
cgggggaggagtgagTGGTGACATGCCCTATTATATTCATCCTTGGAAAG
ACCCTGCTTTTGGCCCTCCGGTACgcaaaaagggagggagtgcgggagtg
cgggagggcgggagggagggcgggcgggggataTGATAGGGTCCGCCACG
TCTTGCGACAGGAACTGAGATAAAAAAGAGTCAAAACTTCTGGAAGCTTC
CACTCCAATGTCTTTTCCTCCTACCTTCAGtctctcccatccccttccgA
GCTCTCTAGCgcctctccctgcccgccaCATCCAATATACCcgtccctcg
ccctccctccttcccttccacccaaacccctcctccccatatccctctct
tcctaaTATGCACATCtaccccccctctttcccttatctcctcccacccc
ctccaggTTGAATATCAGTCCCTCCGTCCGTTCCCCCCCGCTATCCTCCG
TAcctactccctcctccaagccatGTCCTTCCAAGgcttgtggaccgaaa
tCCACCGGGCTTGGATCACGGTCGACAACCTCCTCTACATTTGGGACTAC
CACACGGAAGGTAAGgtctaaccctaaccctacggtcttgggggggggga
tgg
back to top

Coding sequence (CDS) from alignment at CM002462.1:93677..94629+

>rna3803 ID=rna3803|Name=rna3803|organism=Nannochloropsis gaditana|type=CDS|length=1332bp|location=Sequence derived from alignment at CM002462.1:93677..94629+ (Nannochloropsis gaditana)
ATGAGGTCCGGGGACGGTAATGGCACCGCGCTGCTTTCCCGTCGAACCCT
GCCAGCAAGTCGAGGAAGCATGAGGGATGAGAAAGGTccgggggcagagg
agatggCTTCGACAGAACAAGCCCGACAAGCGGTGCTGGCGACCATTGAA
GAAAAGATgcgaaaggaaggaaagccggAAGATTCTCGCATGAATTATGC
CTCGATGTccgggggaggagtgagTGGTGACATGCCCTATTATATTCATC
CTTGGAAAGACCCTGCTTTTGGCCCTCCGgTTGAATATCAGTCCCTCCGT
CCGTTCCCCCCCGCTATCCTCCGTAcctactccctcctccaagccatGTC
CTTCCAAGgcttgtggaccgaaatCCACCGGGCTTGGATCACGGTCGACA
ACCTCCTCTACATTTGGGACTACCACACGGAAGGTAAGgtctaaATGAGG
TCCGGGGACGGTAATGGCACCGCGCTGCTTTCCCGTCGAACCCTGCCAGC
AAGTCGAGGAAGCATGAGGGATGAGAAAGGTccgggggcagaggagatgg
CTTCGACAGAACAAGCCCGACAAGCGGTGCTGGCGACCATTGAAGAAAAG
ATgcgaaaggaaggaaagccggAAGATTCTCGCATGAATTATGCCTCGAT
GTccgggggaggagtgagTGGTGACATGCCCTATTATATTCATCCTTGGA
AAGACCCTGCTTTTGGCCCTCCGgTTGAATATCAGTCCCTCCGTCCGTTC
CCCCCCGCTATCCTCCGTAcctactccctcctccaagccatGTCCTTCCA
AGgcttgtggaccgaaatCCACCGGGCTTGGATCACGGTCGACAACCTCC
TCTACATTTGGGACTACCACACGGAAGGTAAGgtctaaATGAGGTCCGGG
GACGGTAATGGCACCGCGCTGCTTTCCCGTCGAACCCTGCCAGCAAGTCG
AGGAAGCATGAGGGATGAGAAAGGTccgggggcagaggagatggCTTCGA
CAGAACAAGCCCGACAAGCGGTGCTGGCGACCATTGAAGAAAAGATgcga
aaggaaggaaagccggAAGATTCTCGCATGAATTATGCCTCGATGTccgg
gggaggagtgagTGGTGACATGCCCTATTATATTCATCCTTGGAAAGACC
CTGCTTTTGGCCCTCCGgTTGAATATCAGTCCCTCCGTCCGTTCCCCCCC
GCTATCCTCCGTAcctactccctcctccaagccatGTCCTTCCAAGgctt
gtggaccgaaatCCACCGGGCTTGGATCACGGTCGACAACCTCCTCTACA
TTTGGGACTACCACACGGAAGGTAAGgtctaa
back to top
Synonyms
Publications