EWM26879.1, cds3794 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26879.1 vs. NCBI_GenBank
Match: gi|585108993|gb|EWM26879.1| (nuclear pore complex protein [Nannochloropsis gaditana]) HSP 1 Score: 305.449 bits (781), Expect = 3.597e-105 Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0
Query: 1 MRSGDGNGTALLSRRTLPASRGSMRDEKGPGAEEMASTEQARQAVLATIEEKMRKEGKPEDSRMNYASMSGGGVSGDMPYYIHPWKDPAFGPPVEYQSLRPFPPAILRTYSLLQAMSFQGLWTEIHRAWITVDNLLYIWDYHTEGKV 147
MRSGDGNGTALLSRRTLPASRGSMRDEKGPGAEEMASTEQARQAVLATIEEKMRKEGKPEDSRMNYASMSGGGVSGDMPYYIHPWKDPAFGPPVEYQSLRPFPPAILRTYSLLQAMSFQGLWTEIHRAWITVDNLLYIWDYHTEGKV
Sbjct: 1 MRSGDGNGTALLSRRTLPASRGSMRDEKGPGAEEMASTEQARQAVLATIEEKMRKEGKPEDSRMNYASMSGGGVSGDMPYYIHPWKDPAFGPPVEYQSLRPFPPAILRTYSLLQAMSFQGLWTEIHRAWITVDNLLYIWDYHTEGKV 147
BLAST of EWM26879.1 vs. NCBI_GenBank
Match: gi|298712183|emb|CBJ33055.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 67.781 bits (164), Expect = 1.793e-10 Identity = 34/103 (33.01%), Postives = 52/103 (50.49%), Query Frame = 0
Query: 42 RQAVLATIEEKMRKEGKPEDSRMNYASMSGGGVSGDMPYYIHPWKDPAFGPPVEYQSLRPFPPAILRTYSLLQAMSFQGLWTEIHRAWITVDNLLYIWDYHTE 144
R A + R E PE + A+ G S Y+ P+ + P ++ +S P A+ R ++ M+F GL EI AW+TVDN+LY+W+YHT+
Sbjct: 16 RNANTVLLHNLRRDELSPELQKQLTAT---GMASTSQAYFCDPYTNSYLAPQIQPKSFAMLPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNYHTQ 115
BLAST of EWM26879.1 vs. NCBI_GenBank
Match: gi|1001615611|gb|KXS19356.1| (nucleoporin-domain-containing protein [Gonapodya prolifera JEL478]) HSP 1 Score: 67.781 bits (164), Expect = 2.381e-10 Identity = 28/63 (44.44%), Postives = 41/63 (65.08%), Query Frame = 0
Query: 85 WKDPAFGPPVEYQSLRPFPPAILRTYSLLQAMSFQGLWTEIHRAWITVDNLLYIWDYHTEGKV 147
+ DP F PP + Q++ P P A+L Y L+ SF GL+ EI RAW+T+DN L +WDY ++ +
Sbjct: 43 YHDPPFWPPFKRQNMIPLPDALLEQYDSLRIRSFMGLFPEISRAWVTIDNRLILWDYESQSDL 105
BLAST of EWM26879.1 vs. NCBI_GenBank
Match: gi|669140958|ref|XP_008606047.1| (hypothetical protein SDRG_02249 [Saprolegnia diclina VS20] >gi|530742106|gb|EQC40348.1| hypothetical protein SDRG_02249 [Saprolegnia diclina VS20]) HSP 1 Score: 63.1586 bits (152), Expect = 8.668e-9 Identity = 27/67 (40.30%), Postives = 39/67 (58.21%), Query Frame = 0
Query: 80 YYIHPWKDPAFGPP-VEYQSLRPFPPAILRTYSLLQAMSFQGLWTEIHRAWITVDNLLYIWDYHTEG 145
Y+ P+ A+ P V Q + P+P AI Y + + SF GL E+H AW++VDN L++WDY E
Sbjct: 46 YFFEPYTAGAWSPQLVHKQKILPYPSAIASAYDKMVSSSFSGLLQELHHAWVSVDNTLFLWDYTAEA 112
BLAST of EWM26879.1 vs. NCBI_GenBank
Match: gi|698780561|ref|XP_009823324.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574121048|gb|ETV86525.1| hypothetical protein, variant [Aphanomyces astaci]) HSP 1 Score: 62.7734 bits (151), Expect = 1.047e-8 Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 0
Query: 80 YYIHPWKDPAFG---PPVEYQSLRPFPPAILRTYSLLQAMSFQGLWTEIHRAWITVDNLLYIWDY 141
Y+ P+ + A G V Q L P+P AI Y +++ SF GL EIH AW++VDN+L++WDY
Sbjct: 58 YFFEPYTNTAAGWQAQLVHKQKLLPYPAAITSAYDNMRSGSFSGLLQEIHHAWVSVDNVLFLWDY 122
BLAST of EWM26879.1 vs. NCBI_GenBank
Match: gi|813165841|ref|XP_012203770.1| (hypothetical protein SPRG_20666 [Saprolegnia parasitica CBS 223.65] >gi|641531473|gb|KDO25545.1| hypothetical protein SPRG_20666 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 62.7734 bits (151), Expect = 1.288e-8 Identity = 27/68 (39.71%), Postives = 40/68 (58.82%), Query Frame = 0
Query: 80 YYIHPWKDPAFGPP-VEYQSLRPFPPAILRTYSLLQAMSFQGLWTEIHRAWITVDNLLYIWDYHTEGK 146
Y+ P+ A+ P V Q + +P AI Y + + SF GL E+H AW++VDN L++WDY +GK
Sbjct: 46 YFFEPYTAGAWSPQLVHKQKILAYPSAIASAYDKMVSSSFSGLLQELHHAWVSVDNTLFLWDYTADGK 113
BLAST of EWM26879.1 vs. NCBI_GenBank
Match: gi|698780559|ref|XP_009823323.1| (hypothetical protein H257_01698 [Aphanomyces astaci] >gi|574121047|gb|ETV86524.1| hypothetical protein H257_01698 [Aphanomyces astaci]) HSP 1 Score: 62.7734 bits (151), Expect = 1.327e-8 Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 0
Query: 80 YYIHPWKDPAFG---PPVEYQSLRPFPPAILRTYSLLQAMSFQGLWTEIHRAWITVDNLLYIWDY 141
Y+ P+ + A G V Q L P+P AI Y +++ SF GL EIH AW++VDN+L++WDY
Sbjct: 58 YFFEPYTNTAAGWQAQLVHKQKLLPYPAAITSAYDNMRSGSFSGLLQEIHHAWVSVDNVLFLWDY 122
BLAST of EWM26879.1 vs. NCBI_GenBank
Match: gi|1173947887|gb|OQR96059.1| (nuclear pore complex protein [Achlya hypogyna]) HSP 1 Score: 60.8474 bits (146), Expect = 4.726e-8 Identity = 25/69 (36.23%), Postives = 39/69 (56.52%), Query Frame = 0
Query: 80 YYIHPWKDPAFGPP-VEYQSLRPFPPAILRTYSLLQAMSFQGLWTEIHRAWITVDNLLYIWDYHTEGKV 147
Y+ P+ A+ P V + P+P I Y + + SF GL E+H AW++VDN L++WDY + +V
Sbjct: 47 YFFEPYSAGAWSPQLVHKHKILPYPSVIASAYDAMASSSFSGLLQELHHAWVSVDNTLFLWDYTRDNRV 115
BLAST of EWM26879.1 vs. NCBI_GenBank
Match: gi|1041545595|ref|XP_017301681.1| (PREDICTED: nuclear pore complex protein Nup155 [Diaphorina citri]) HSP 1 Score: 59.6918 bits (143), Expect = 1.480e-7 Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 0
Query: 101 PFPPAILRTYSLLQAMSFQGLWTEIHRAWITVDNLLYIWDY 141
P PP I+ +SL+Q+ S GL+ EI+RAW+ VDN +YIWDY
Sbjct: 700 PIPPEIIENFSLIQSHSSMGLFPEINRAWLAVDNQIYIWDY 740
BLAST of EWM26879.1 vs. NCBI_GenBank
Match: gi|673024538|ref|XP_008866230.1| (hypothetical protein H310_03929 [Aphanomyces invadans] >gi|574477796|gb|ETW04792.1| hypothetical protein H310_03929 [Aphanomyces invadans]) HSP 1 Score: 59.3066 bits (142), Expect = 1.625e-7 Identity = 27/65 (41.54%), Postives = 39/65 (60.00%), Query Frame = 0
Query: 80 YYIHPWKDPAFG---PPVEYQSLRPFPPAILRTYSLLQAMSFQGLWTEIHRAWITVDNLLYIWDY 141
Y+ P+ + A G V Q L P+P AI Y +++ SF GL EIH AW++VD+ L++WDY
Sbjct: 62 YFFEPYSNAAGGWQPQLVHTQKLLPYPVAITSAYENMRSGSFSGLLQEIHHAWVSVDSTLFLWDY 126 The following BLAST results are available for this feature:
BLAST of EWM26879.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|