EWM26879.1, cds3794 (CDS) Nannochloropsis gaditana

Overview
NameEWM26879.1
Unique Namecds3794
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:93713..93895 +
Alignment locationCM002462.1:94001..94096 +
Alignment locationCM002462.1:94433..94597 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26879.1
Productnuclear pore complex protein
Orig transcript idgnl|cribi|Naga_101398g1.4397.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:93713..93895 +
CM002462.1supercontigCM002462.1:94001..94096 +
CM002462.1supercontigCM002462.1:94433..94597 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR014908Nucleoporin_Nup133/Nup155_N
Homology
BLAST of EWM26879.1 vs. NCBI_GenBank
Match: gi|585108993|gb|EWM26879.1| (nuclear pore complex protein [Nannochloropsis gaditana])

HSP 1 Score: 305.449 bits (781), Expect = 3.597e-105
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0
Query:    1 MRSGDGNGTALLSRRTLPASRGSMRDEKGPGAEEMASTEQARQAVLATIEEKMRKEGKPEDSRMNYASMSGGGVSGDMPYYIHPWKDPAFGPPVEYQSLRPFPPAILRTYSLLQAMSFQGLWTEIHRAWITVDNLLYIWDYHTEGKV 147
            MRSGDGNGTALLSRRTLPASRGSMRDEKGPGAEEMASTEQARQAVLATIEEKMRKEGKPEDSRMNYASMSGGGVSGDMPYYIHPWKDPAFGPPVEYQSLRPFPPAILRTYSLLQAMSFQGLWTEIHRAWITVDNLLYIWDYHTEGKV
Sbjct:    1 MRSGDGNGTALLSRRTLPASRGSMRDEKGPGAEEMASTEQARQAVLATIEEKMRKEGKPEDSRMNYASMSGGGVSGDMPYYIHPWKDPAFGPPVEYQSLRPFPPAILRTYSLLQAMSFQGLWTEIHRAWITVDNLLYIWDYHTEGKV 147          
BLAST of EWM26879.1 vs. NCBI_GenBank
Match: gi|298712183|emb|CBJ33055.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 67.781 bits (164), Expect = 1.793e-10
Identity = 34/103 (33.01%), Postives = 52/103 (50.49%), Query Frame = 0
Query:   42 RQAVLATIEEKMRKEGKPEDSRMNYASMSGGGVSGDMPYYIHPWKDPAFGPPVEYQSLRPFPPAILRTYSLLQAMSFQGLWTEIHRAWITVDNLLYIWDYHTE 144
            R A    +    R E  PE  +   A+   G  S    Y+  P+ +    P ++ +S    P A+ R    ++ M+F GL  EI  AW+TVDN+LY+W+YHT+
Sbjct:   16 RNANTVLLHNLRRDELSPELQKQLTAT---GMASTSQAYFCDPYTNSYLAPQIQPKSFAMLPEALSRERDRVECMTFMGLLPEIDHAWMTVDNVLYLWNYHTQ 115          
BLAST of EWM26879.1 vs. NCBI_GenBank
Match: gi|1001615611|gb|KXS19356.1| (nucleoporin-domain-containing protein [Gonapodya prolifera JEL478])

HSP 1 Score: 67.781 bits (164), Expect = 2.381e-10
Identity = 28/63 (44.44%), Postives = 41/63 (65.08%), Query Frame = 0
Query:   85 WKDPAFGPPVEYQSLRPFPPAILRTYSLLQAMSFQGLWTEIHRAWITVDNLLYIWDYHTEGKV 147
            + DP F PP + Q++ P P A+L  Y  L+  SF GL+ EI RAW+T+DN L +WDY ++  +
Sbjct:   43 YHDPPFWPPFKRQNMIPLPDALLEQYDSLRIRSFMGLFPEISRAWVTIDNRLILWDYESQSDL 105          
BLAST of EWM26879.1 vs. NCBI_GenBank
Match: gi|669140958|ref|XP_008606047.1| (hypothetical protein SDRG_02249 [Saprolegnia diclina VS20] >gi|530742106|gb|EQC40348.1| hypothetical protein SDRG_02249 [Saprolegnia diclina VS20])

HSP 1 Score: 63.1586 bits (152), Expect = 8.668e-9
Identity = 27/67 (40.30%), Postives = 39/67 (58.21%), Query Frame = 0
Query:   80 YYIHPWKDPAFGPP-VEYQSLRPFPPAILRTYSLLQAMSFQGLWTEIHRAWITVDNLLYIWDYHTEG 145
            Y+  P+   A+ P  V  Q + P+P AI   Y  + + SF GL  E+H AW++VDN L++WDY  E 
Sbjct:   46 YFFEPYTAGAWSPQLVHKQKILPYPSAIASAYDKMVSSSFSGLLQELHHAWVSVDNTLFLWDYTAEA 112          
BLAST of EWM26879.1 vs. NCBI_GenBank
Match: gi|698780561|ref|XP_009823324.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574121048|gb|ETV86525.1| hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 62.7734 bits (151), Expect = 1.047e-8
Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 0
Query:   80 YYIHPWKDPAFG---PPVEYQSLRPFPPAILRTYSLLQAMSFQGLWTEIHRAWITVDNLLYIWDY 141
            Y+  P+ + A G     V  Q L P+P AI   Y  +++ SF GL  EIH AW++VDN+L++WDY
Sbjct:   58 YFFEPYTNTAAGWQAQLVHKQKLLPYPAAITSAYDNMRSGSFSGLLQEIHHAWVSVDNVLFLWDY 122          
BLAST of EWM26879.1 vs. NCBI_GenBank
Match: gi|813165841|ref|XP_012203770.1| (hypothetical protein SPRG_20666 [Saprolegnia parasitica CBS 223.65] >gi|641531473|gb|KDO25545.1| hypothetical protein SPRG_20666 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 62.7734 bits (151), Expect = 1.288e-8
Identity = 27/68 (39.71%), Postives = 40/68 (58.82%), Query Frame = 0
Query:   80 YYIHPWKDPAFGPP-VEYQSLRPFPPAILRTYSLLQAMSFQGLWTEIHRAWITVDNLLYIWDYHTEGK 146
            Y+  P+   A+ P  V  Q +  +P AI   Y  + + SF GL  E+H AW++VDN L++WDY  +GK
Sbjct:   46 YFFEPYTAGAWSPQLVHKQKILAYPSAIASAYDKMVSSSFSGLLQELHHAWVSVDNTLFLWDYTADGK 113          
BLAST of EWM26879.1 vs. NCBI_GenBank
Match: gi|698780559|ref|XP_009823323.1| (hypothetical protein H257_01698 [Aphanomyces astaci] >gi|574121047|gb|ETV86524.1| hypothetical protein H257_01698 [Aphanomyces astaci])

HSP 1 Score: 62.7734 bits (151), Expect = 1.327e-8
Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 0
Query:   80 YYIHPWKDPAFG---PPVEYQSLRPFPPAILRTYSLLQAMSFQGLWTEIHRAWITVDNLLYIWDY 141
            Y+  P+ + A G     V  Q L P+P AI   Y  +++ SF GL  EIH AW++VDN+L++WDY
Sbjct:   58 YFFEPYTNTAAGWQAQLVHKQKLLPYPAAITSAYDNMRSGSFSGLLQEIHHAWVSVDNVLFLWDY 122          
BLAST of EWM26879.1 vs. NCBI_GenBank
Match: gi|1173947887|gb|OQR96059.1| (nuclear pore complex protein [Achlya hypogyna])

HSP 1 Score: 60.8474 bits (146), Expect = 4.726e-8
Identity = 25/69 (36.23%), Postives = 39/69 (56.52%), Query Frame = 0
Query:   80 YYIHPWKDPAFGPP-VEYQSLRPFPPAILRTYSLLQAMSFQGLWTEIHRAWITVDNLLYIWDYHTEGKV 147
            Y+  P+   A+ P  V    + P+P  I   Y  + + SF GL  E+H AW++VDN L++WDY  + +V
Sbjct:   47 YFFEPYSAGAWSPQLVHKHKILPYPSVIASAYDAMASSSFSGLLQELHHAWVSVDNTLFLWDYTRDNRV 115          
BLAST of EWM26879.1 vs. NCBI_GenBank
Match: gi|1041545595|ref|XP_017301681.1| (PREDICTED: nuclear pore complex protein Nup155 [Diaphorina citri])

HSP 1 Score: 59.6918 bits (143), Expect = 1.480e-7
Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 0
Query:  101 PFPPAILRTYSLLQAMSFQGLWTEIHRAWITVDNLLYIWDY 141
            P PP I+  +SL+Q+ S  GL+ EI+RAW+ VDN +YIWDY
Sbjct:  700 PIPPEIIENFSLIQSHSSMGLFPEINRAWLAVDNQIYIWDY 740          
BLAST of EWM26879.1 vs. NCBI_GenBank
Match: gi|673024538|ref|XP_008866230.1| (hypothetical protein H310_03929 [Aphanomyces invadans] >gi|574477796|gb|ETW04792.1| hypothetical protein H310_03929 [Aphanomyces invadans])

HSP 1 Score: 59.3066 bits (142), Expect = 1.625e-7
Identity = 27/65 (41.54%), Postives = 39/65 (60.00%), Query Frame = 0
Query:   80 YYIHPWKDPAFG---PPVEYQSLRPFPPAILRTYSLLQAMSFQGLWTEIHRAWITVDNLLYIWDY 141
            Y+  P+ + A G     V  Q L P+P AI   Y  +++ SF GL  EIH AW++VD+ L++WDY
Sbjct:   62 YFFEPYSNAAGGWQPQLVHTQKLLPYPVAITSAYENMRSGSFSGLLQEIHHAWVSVDSTLFLWDY 126          
The following BLAST results are available for this feature:
BLAST of EWM26879.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108993|gb|EWM26879.1|3.597e-105100.00nuclear pore complex protein [Nannochloropsis gadi... [more]
gi|298712183|emb|CBJ33055.1|1.793e-1033.01conserved unknown protein [Ectocarpus siliculosus][more]
gi|1001615611|gb|KXS19356.1|2.381e-1044.44nucleoporin-domain-containing protein [Gonapodya p... [more]
gi|669140958|ref|XP_008606047.1|8.668e-940.30hypothetical protein SDRG_02249 [Saprolegnia dicli... [more]
gi|698780561|ref|XP_009823324.1|1.047e-843.08hypothetical protein, variant [Aphanomyces astaci]... [more]
gi|813165841|ref|XP_012203770.1|1.288e-839.71hypothetical protein SPRG_20666 [Saprolegnia paras... [more]
gi|698780559|ref|XP_009823323.1|1.327e-843.08hypothetical protein H257_01698 [Aphanomyces astac... [more]
gi|1173947887|gb|OQR96059.1|4.726e-836.23nuclear pore complex protein [Achlya hypogyna][more]
gi|1041545595|ref|XP_017301681.1|1.480e-756.10PREDICTED: nuclear pore complex protein Nup155 [Di... [more]
gi|673024538|ref|XP_008866230.1|1.625e-741.54hypothetical protein H310_03929 [Aphanomyces invad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3803rna3803Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications