rna3802, rna3802 (mRNA) Nannochloropsis gaditana

Overview
Namerna3802
Unique Namerna3802
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1376
Alignment locationCM002462.1:90277..91159 -

Link to JBrowse

Properties
Property NameValue
Productcytosol-type hsp70
Orig transcript idgnl|cribi|Naga_100965g2.7616.mrna
Orig protein idgnl|cribi|Naga_100965g2.7616
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:90277..91159 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100965g2gene3660Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26880.1cds3793Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3802rna3802-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3802 ID=rna3802|Name=rna3802|organism=Nannochloropsis gaditana|type=mRNA|length=1376bp
TTGAAGAGGCAACGGAATGCGAGGGAGAGGGGAAGGAGAGGGTCGAAAGT
GAAGGAAGGGGGGGGGGCAAAACTTGTTTGCAGACATGCAATTGAAAACG
GCGGCAGATTCGGCCGAGTGTCTAAATGTGGGTTCCAACGGCGACAACTT
GCAGGGAGGCTGGCAGCGGGCGTCAAAGGCAGCAGCTGCGGCCGCCGCAG
CCGTTTCAGGGGACTCTCTTGTGTCCATGATGGACAGCATGAGCATGGCA
CCCCGCCCTCCCTCCCTCCCTCTTTCCCTTCCTCCTGCATCATTACCTGT
CGGGCAGTCGGACATGAAGGAAGAAAGGCCGGCCCAGCAATCCCAGCCCG
CCTCGGTTTTAGTGGCGGCGGCAAAAGCATACCCGGAGCCCCCGAGGGCA
AATGGGCGCCACCCTACCGACCCGACCTACCACCATGGTCGCCACCATCC
TCCTCCCCTAGCGGGGACGTCTCCACCTCCTCCCACGGATCTCTTGCAGC
TGGGCAGCACGCCTCCCCCCGTGCCGGCCAAACTGCTGCATCCCTTCGAC
CCTCTCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCACCACCTCCAT
TCCCTCCCAGCCCCCCTTGGCTCTGACCGCCTCCGTTCCTCCACTCGCCG
CCCACGTGAGTCGGCCCATGCCTCAGAATCCTTCCTCGTTCCCCTCCTCC
CTCCCACCCTCCCTGCCAGCCGACCTGTCACACATGGGCAGAGGCATGAT
CCCGCCCATGCAACCGCGGACCATCATCCCAGCTGCTCTTGACGAGGGCT
GGGGAAGTGGAGAGCCGAGCAGCGCCTTTGACTTCATAGGGAGAGGGCGA
GGGGGAGGAGGAGGCGGTGGCGAAACGAAAGGAGGGGAGGAAGCCTTTTC
CTTCGTGAAGGAAGCGATGGACAGGAGCCGGAGTGGAGGGAGGGACGGAT
GAGGAGGGAGGTCTTGGGGCAGGAAGGGGAAAAGGATAATGTTGCTGTGC
TGGTGCATTGATGTACATGGGGAAGGCGATGGAAAGCGGGAGGTCGGTCA
GAAGCCTGTACACAGAGAAATAAAAAGTCATGTTGAGTGCTGACGACCTA
GGGGACGAGGGAGGGACTGGCCGCGTGGTGAAGGAAAAGAAGAGGGAGAG
GACGAGGGAGAGGGAGGGAAAAGAAAGGAATCGATGCCTTGGAAAAGTAA
ATTGAGCAAGAGAGGTGTGACGTCAATGGCAGTGGGCGGGACACAGGAAA
AAGGGTCAGAGGGTGGAGGAGATTCTCGATGGAAAAAGGCGCGAAAAGTC
AGACGCGTCACAAGCGCCAAGCCAACCATAAAGCACCCTGGATGCCCGCG
TGAATAATGACTGGTGTACGTGATCA
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protein sequence of rna3802

>rna3802-protein ID=rna3802-protein|Name=rna3802|organism=Nannochloropsis gaditana|type=polypeptide|length=207bp
MCPRISTGADFDYCLANHLLATYGDITFSASSSSSSSSASTFTTSSNEDR
NVKGTKEVMAFEDEEDEQPSSPSSSSPLHSCSSYTLLSIAEHLKKRISTA
ASSSFSCLSQGGTGSQSDSFVQNVSVSRDGFEKACKDVFARALSPVDRCL
ESNGMGRDEIDEVVMVGGTTRIPKIREMLRAHLNVESLNTHIDPDVTVAV
GAACVVD
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mRNA from alignment at CM002462.1:90277..91159-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3802 ID=rna3802|Name=rna3802|organism=Nannochloropsis gaditana|type=mRNA|length=883bp|location=Sequence derived from alignment at CM002462.1:90277..91159- (Nannochloropsis gaditana)
GAGGGTGGGAGGTTCCGACGTGCTTGCGAGAGGGACTTAAAGATTGTTGG
ACGCACTTTGTTGCGATACCCGTGCTCAAATCGTTTGGCTGCATTCCATG
TGAAGAGAAAAGGAGCATAGGGTGATTCAGGACTGTATCGATCTAGCCGT
GGACTGAGATAGTATTATGTGCCCTCGCATATCTACAGGCGCCGACTTTG
ATTACTGCCTGGCAAACCATCTCTTGGCAACATATGGCGATATCACTTTC
TCCGCCTCCTCCTCCTCCTCCTCCTCCTCAGCCTCTACCTTCACCACTTC
CTCCAACGAGGACAGGAACGTAAAAGGAACGAAGGAGGTGATGGCATTCG
AAGACGAGGAGGATGAGCAGCCATCTTCACCCTCGAGTTCTTCACCTCTC
CACAGCTGCTCCTCGTACACCCTCCTATCCATCGCAGAGCACTTAAAAAA
ACGCATTTCAACAGCGGCTTCCTCCTCTTTTTCCTGTCTTTCGCAAGGCG
GCACCGGGTCCCAGAGCGATTCCTTTGTACAAAACGTAAGCGTGAGCCGA
GATGGCTTTGAAAAGGCATGCAAAGACGTATTTGCCCGAGCCCTTTCTCC
CGTTGACCGTTGCTTGGAAAGCAATGGAATGGGACGGGACGAAATAGACG
AAGTGGTGATGGTAGGGGGGACGACCAGAATACCCAAAATAAGAGAAATG
CTGCGAGCGCACTTGAACGTGGAGAGTTTGAACACACACATAGATCCAGA
CGTGACGGTGGCGGTGGGGGCAGCCTGCGTGGTCGATTAATTCACAGTTG
TGCTGCAGGGAGGTCAACGGCATAAATTACTTTGCCCCCCCGAAAAAAAC
TTGCCGACAAAAACTGAATGACCAATTGACTGA
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Coding sequence (CDS) from alignment at CM002462.1:90277..91159-

>rna3802 ID=rna3802|Name=rna3802|organism=Nannochloropsis gaditana|type=CDS|length=624bp|location=Sequence derived from alignment at CM002462.1:90277..91159- (Nannochloropsis gaditana)
ATGTGCCCTCGCATATCTACAGGCGCCGACTTTGATTACTGCCTGGCAAA
CCATCTCTTGGCAACATATGGCGATATCACTTTCTCCGCCTCCTCCTCCT
CCTCCTCCTCCTCAGCCTCTACCTTCACCACTTCCTCCAACGAGGACAGG
AACGTAAAAGGAACGAAGGAGGTGATGGCATTCGAAGACGAGGAGGATGA
GCAGCCATCTTCACCCTCGAGTTCTTCACCTCTCCACAGCTGCTCCTCGT
ACACCCTCCTATCCATCGCAGAGCACTTAAAAAAACGCATTTCAACAGCG
GCTTCCTCCTCTTTTTCCTGTCTTTCGCAAGGCGGCACCGGGTCCCAGAG
CGATTCCTTTGTACAAAACGTAAGCGTGAGCCGAGATGGCTTTGAAAAGG
CATGCAAAGACGTATTTGCCCGAGCCCTTTCTCCCGTTGACCGTTGCTTG
GAAAGCAATGGAATGGGACGGGACGAAATAGACGAAGTGGTGATGGTAGG
GGGGACGACCAGAATACCCAAAATAAGAGAAATGCTGCGAGCGCACTTGA
ACGTGGAGAGTTTGAACACACACATAGATCCAGACGTGACGGTGGCGGTG
GGGGCAGCCTGCGTGGTCGATTAA
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Synonyms
Publications