EWM26880.1, cds3793 (CDS) Nannochloropsis gaditana

Overview
NameEWM26880.1
Unique Namecds3793
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:90370..90993 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26880.1
Productcytosol-type hsp70
Orig transcript idgnl|cribi|Naga_100965g2.7616.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:90370..90993 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR018181Heat_shock_70_CS
IPR013126Hsp_70_fam
Homology
BLAST of EWM26880.1 vs. NCBI_GenBank
Match: gi|585108995|gb|EWM26880.1| (cytosol-type hsp70 [Nannochloropsis gaditana])

HSP 1 Score: 421.394 bits (1082), Expect = 3.715e-149
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0
Query:    1 MCPRISTGADFDYCLANHLLATYGDITFSASSSSSSSSASTFTTSSNEDRNVKGTKEVMAFEDEEDEQPSSPSSSSPLHSCSSYTLLSIAEHLKKRISTAASSSFSCLSQGGTGSQSDSFVQNVSVSRDGFEKACKDVFARALSPVDRCLESNGMGRDEIDEVVMVGGTTRIPKIREMLRAHLNVESLNTHIDPDVTVAVGAACVVD 207
            MCPRISTGADFDYCLANHLLATYGDITFSASSSSSSSSASTFTTSSNEDRNVKGTKEVMAFEDEEDEQPSSPSSSSPLHSCSSYTLLSIAEHLKKRISTAASSSFSCLSQGGTGSQSDSFVQNVSVSRDGFEKACKDVFARALSPVDRCLESNGMGRDEIDEVVMVGGTTRIPKIREMLRAHLNVESLNTHIDPDVTVAVGAACVVD
Sbjct:    1 MCPRISTGADFDYCLANHLLATYGDITFSASSSSSSSSASTFTTSSNEDRNVKGTKEVMAFEDEEDEQPSSPSSSSPLHSCSSYTLLSIAEHLKKRISTAASSSFSCLSQGGTGSQSDSFVQNVSVSRDGFEKACKDVFARALSPVDRCLESNGMGRDEIDEVVMVGGTTRIPKIREMLRAHLNVESLNTHIDPDVTVAVGAACVVD 207          
BLAST of EWM26880.1 vs. NCBI_GenBank
Match: gi|397599086|gb|EJK57343.1| (hypothetical protein THAOC_22622 [Thalassiosira oceanica])

HSP 1 Score: 101.679 bits (252), Expect = 8.759e-25
Identity = 42/77 (54.55%), Postives = 61/77 (79.22%), Query Frame = 0
Query:  131 FEKACKDVFARALSPVDRCLESNGMGRDEIDEVVMVGGTTRIPKIREMLRAHLNVESLNTHIDPDVTVAVGAACVVD 207
            +++A + ++ R+L P+ R L+  G+GRDEIDEVVMVGGTTR+P+IRE++R  + V+ +N  IDPD+TVA GAA V+D
Sbjct:    6 YDQAVETLYERSLLPISRLLKEQGLGRDEIDEVVMVGGTTRMPQIRELVRKEMAVDKINVSIDPDLTVAYGAASVID 82          
BLAST of EWM26880.1 vs. NCBI_GenBank
Match: gi|397611305|gb|EJK61274.1| (hypothetical protein THAOC_18273 [Thalassiosira oceanica])

HSP 1 Score: 109.768 bits (273), Expect = 2.871e-24
Identity = 70/214 (32.71%), Postives = 116/214 (54.21%), Query Frame = 0
Query:    8 GADFDYCLANHLLATYGDITFSASSSSSSSSASTFTTSSNEDRNVKGTKEVMAFEDEEDEQPSSPSSSSPLHSCSSYTLLSIAEHLKKRIS-----TAASSSFSC--------LSQGGTGSQSDSFVQ-NVSVSRDGFEKACKDVFARALSPVDRCLESNGMGRDEIDEVVMVGGTTRIPKIREMLRAHLNVESLNTHIDPDVTVAVGAACVVD 207
            GADFD  +A+ LL   G      + + + ++        +E  NV          ++  E+     S  PL  C+  +L +I E +K R+S     T+   +  C        ++ G      ++ ++ ++S+S   +++A + ++ R+L P+ R L+  G+GRDEIDEVVMVGGTTR+P+IRE++R  + V+ +N  IDPD+TVA GAA V+D
Sbjct:  460 GADFDAAVAHWLLEKKGAAEIVRAMADAIATIEDSLVGVDETSNV----------EDSFEKHCPKLSQVPL--CTKSSLHTIGERMKIRLSEHPGETSYEVNEPCYRLPASLGVAPGTANELCEAIIEVSLSMSLGEYDQAVETLYERSLLPISRLLKEQGLGRDEIDEVVMVGGTTRMPQIRELVRKEMAVDKINVSIDPDLTVAYGAASVID 661          
BLAST of EWM26880.1 vs. NCBI_GenBank
Match: gi|676389739|ref|XP_009038148.1| (hypothetical protein AURANDRAFT_11914, partial [Aureococcus anophagefferens] >gi|323451026|gb|EGB06904.1| hypothetical protein AURANDRAFT_11914, partial [Aureococcus anophagefferens])

HSP 1 Score: 103.219 bits (256), Expect = 1.500e-22
Identity = 61/131 (46.56%), Postives = 83/131 (63.36%), Query Frame = 0
Query:   74 SSSPLHSCSSYTLLSIAEHLKKRISTAASSSFSCLSQGGTGSQSDSFVQ-NVSVSRDGFEKACKDVFARALSPVDRCLESNGMGRDEIDEVVMVGGTTRIPKIREMLRAHLNVESLNTHIDPDVTVAVGAA 203
            +  PL  C+ + L S+ E LK  +S AAS+  +CL+        D  V+   + +R  FEKAC  +F RA+  V R L+   +   +IDEVVMVGGT+R+P++R+ LR HL V+ LNT IDPDVTVAVGAA
Sbjct:  261 AREPL--CARHVLASMGERLKIAVSDAASADAACLAPR---ESCDDLVRVEFAYTRKRFEKACDHLFVRAIDTVARTLDEGMLTHRDIDEVVMVGGTSRVPRVRDTLRDHLRVDKLNTEIDPDVTVAVGAA 386          
BLAST of EWM26880.1 vs. NCBI_GenBank
Match: gi|219118255|ref|XP_002179906.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408959|gb|EEC48892.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 93.9745 bits (232), Expect = 2.060e-19
Identity = 51/125 (40.80%), Postives = 79/125 (63.20%), Query Frame = 0
Query:   83 SYTLLSIAEHLKKRISTAASSSFSCLSQGGTGSQSDSFVQNVSVSRDGFEKACKDVFARALSPVDRCLESNGMGRDEIDEVVMVGGTTRIPKIREMLRAHLNVESLNTHIDPDVTVAVGAACVVD 207
            S  L S+ + L   +      S S +S  G  +   +F   +S++   +E++ + ++AR++SPV R L    +  D++DEVVMVGGTTRIP+IR++++  L   S+NTHIDPD+TVA GAA V+D
Sbjct:  208 SQALQSLVQALPSNVDLEDQLSASYVSLEGFCTDLTTF--RLSLTSREYEQSVQALYARSISPVTRLLNDLNLRHDDVDEVVMVGGTTRIPQIRKLVQQALPSASVNTHIDPDITVAYGAASVID 330          
BLAST of EWM26880.1 vs. NCBI_GenBank
Match: gi|1129171093|gb|OLP81155.1| (78 kDa glucose-regulated protein-like [Symbiodinium microadriaticum])

HSP 1 Score: 95.5153 bits (236), Expect = 2.711e-19
Identity = 54/144 (37.50%), Postives = 83/144 (57.64%), Query Frame = 0
Query:   65 EDEQPSSPSSSSPLHSCSSYTLLSIAEHLKKRISTAASSSFSCLSQGGTGSQSDSFVQNVSVSRDGFEKACKDVFARALSPVDRCLESNGMGRDEIDEVVMVGGTTRIPKIREMLRAHLN-VESLNTHIDPDVTVAVGAACVVD 207
            E ++ S+ S       C S  L  +AE +K ++S A+ +   C   GG         + + V+R  FE+A  ++F RA++PV + LE   M    ID+VV+VGG +R+PK+RE+L+      + L+T IDPD+TVA GAA V+D
Sbjct:  412 ERQEASASSGGVAKERCDSSGLHILAEAVKIKLSNASEAETICRDSGGID-------RVLVVTRTEFEEAAAELFGRAMAPVQKVLEDQMMKAAHIDDVVLVGGASRMPKLRELLQEFFGPTKRLHTEIDPDITVAWGAASVLD 548          
BLAST of EWM26880.1 vs. NCBI_GenBank
Match: gi|698788482|ref|XP_009827273.1| (hypothetical protein H257_04453 [Aphanomyces astaci] >gi|574118362|gb|ETV83843.1| hypothetical protein H257_04453 [Aphanomyces astaci])

HSP 1 Score: 93.9745 bits (232), Expect = 5.046e-19
Identity = 53/136 (38.97%), Postives = 76/136 (55.88%), Query Frame = 0
Query:   69 PSSPSSSSP-LHSCSSYTLLSIAEHLKKRISTAASSSFSCLSQGGTGSQSDSFVQNVSVSRDGFEKACKDVFARALSPVDRCLESNGMGRDEIDEVVMVGGTTRIPKIREMLRAHLNVESLNTHIDPDVTVAVGAA 203
            P   +S  P +  C++  +  +AE LK+++S       SC+ Q   GS +   V  + ++R  +E  C     R ++PV   LE N M  D+IDEVV+VGG++RIP I+  L      E  N+HIDPDV VAVGAA
Sbjct:  285 PDLQTSDEPNVFPCTAAGIRGVAEQLKRQLSFDVEGEASCVVQEAVGSVAVGDVLRLRMTRSEWEALCLPTLQRTMAPVKEVLEGNMMTTDDIDEVVLVGGSSRIPWIQAQLAQMFGREP-NSHIDPDVAVAVGAA 419          
BLAST of EWM26880.1 vs. NCBI_GenBank
Match: gi|813150545|ref|XP_012200919.1| (hypothetical protein SPRG_06720 [Saprolegnia parasitica CBS 223.65] >gi|641534534|gb|KDO28481.1| hypothetical protein SPRG_06720 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 93.2041 bits (230), Expect = 9.002e-19
Identity = 62/196 (31.63%), Postives = 96/196 (48.98%), Query Frame = 0
Query:    8 GADFDYCLANHLLATYGDITFSASSSSSSSSASTFTTSSNEDRNVKGTKEVMAFEDEEDEQPSSPSSSSPLHSCSSYTLLSIAEHLKKRISTAASSSFSCLSQGGTGSQSDSFVQNVSVSRDGFEKACKDVFARALSPVDRCLESNGMGRDEIDEVVMVGGTTRIPKIREMLRAHLNVESLNTHIDPDVTVAVGAA 203
            G D D  LA HL+A + ++     ++ +    ST   +S+E                         S+ P   C+   +  +AE LK+ +S   S++ SC+ +  T   +   +  V ++R  +E     + +R L+P+   L+ NGM   +IDEVV+VGG++RIP I+  L A    E  N HIDPDV VAVGAA
Sbjct:  259 GEDLDDVLATHLVARFEELL----ATPALPPLSTLARTSDE-------------------------SAFP---CTVSGMRGVAEKLKRDLSALPSAAASCVIEASTAQHAAGSLATVEMTRQEWEALVAPMLSRTLTPIHDMLDGNGMAPTDIDEVVLVGGSSRIPWIQHALAALFGREP-NAHIDPDVAVAVGAA 421          
BLAST of EWM26880.1 vs. NCBI_GenBank
Match: gi|298707504|emb|CBJ30106.1| (Similarities to Heat shock protein 70-probable alternative splicing [Ectocarpus siliculosus])

HSP 1 Score: 93.5893 bits (231), Expect = 9.014e-19
Identity = 63/229 (27.51%), Postives = 101/229 (44.10%), Query Frame = 0
Query:    8 GADFDYCLANHLLATYGDITFSASSSSSSSSASTFTTSSNEDRNVKGTKEVMAFEDEEDEQPSSPSSSSPLHSCSSYTLLSIAEHLKKRISTAASSSFSCL-------------------SQGGTGSQSDSFVQ------------NVSVSRDGFEKACKDVFARALSPVDRCLESNGMGRDEIDEVVMVGGTTRIPKIREMLRAHLNVESLNTHIDPDVTVAVGAACV 205
            G+DFD C+A HLL    D +  A   +  + +  FTT +                                  C+ + L  ++E L++ ++   +++  C+                   S+ G    +  F              ++ ++R  +E++C  +F R ++PVDR L    +  DEIDEVVMVGG TR P++R +L +HL V+ LN  IDPDV VA GAA +
Sbjct:  257 GSDFDQCVA-HLLERKLDRSIVALEEAEDAVSCGFTTPT----------------------------------CALHNLYPLSEGLRRLLTDGETAAVECMIPPEEAQRRNLRSPKKGTPSEDGDSQDAHRFAGAEGERCKMWNSLSLELTRTEYEQSCASLFDRGVAPVDRLLHHLDLTVDEIDEVVMVGGMTRTPRVRSLLESHLGVDRLNVDIDPDVVVAYGAATI 450          
BLAST of EWM26880.1 vs. NCBI_GenBank
Match: gi|669171295|ref|XP_008620996.1| (hypothetical protein SDRG_16559 [Saprolegnia diclina VS20] >gi|530727347|gb|EQC25589.1| hypothetical protein SDRG_16559 [Saprolegnia diclina VS20])

HSP 1 Score: 92.4337 bits (228), Expect = 2.460e-18
Identity = 63/196 (32.14%), Postives = 95/196 (48.47%), Query Frame = 0
Query:    8 GADFDYCLANHLLATYGDITFSASSSSSSSSASTFTTSSNEDRNVKGTKEVMAFEDEEDEQPSSPSSSSPLHSCSSYTLLSIAEHLKKRISTAASSSFSCLSQGGTGSQSDSFVQNVSVSRDGFEKACKDVFARALSPVDRCLESNGMGRDEIDEVVMVGGTTRIPKIREMLRAHLNVESLNTHIDPDVTVAVGAA 203
            G D D  LA HL+A +  +  + +  + SS A T                             S +S+ P   C+   +  +AE LK+ +S   S++ SC+ +  T   +   +  + ++R  +E     + +R LSP+   L  NGM   ++DEVV+VGG++RIP I+E L A    E  N HIDPDV VAVGAA
Sbjct:  295 GEDLDDVLATHLVARFEALLATPALPALSSLART-----------------------------SDASAFP---CTVSGMRGVAEKLKRDLSATPSAAASCVVEAATPQHAAGDLATLEMTRVEWEALVAPLLSRTLSPIHEMLSGNGMAPSDVDEVVLVGGSSRIPWIQEALGALFGREP-NAHIDPDVAVAVGAA 457          
The following BLAST results are available for this feature:
BLAST of EWM26880.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108995|gb|EWM26880.1|3.715e-149100.00cytosol-type hsp70 [Nannochloropsis gaditana][more]
gi|397599086|gb|EJK57343.1|8.759e-2554.55hypothetical protein THAOC_22622 [Thalassiosira oc... [more]
gi|397611305|gb|EJK61274.1|2.871e-2432.71hypothetical protein THAOC_18273 [Thalassiosira oc... [more]
gi|676389739|ref|XP_009038148.1|1.500e-2246.56hypothetical protein AURANDRAFT_11914, partial [Au... [more]
gi|219118255|ref|XP_002179906.1|2.060e-1940.80predicted protein, partial [Phaeodactylum tricornu... [more]
gi|1129171093|gb|OLP81155.1|2.711e-1937.5078 kDa glucose-regulated protein-like [Symbiodiniu... [more]
gi|698788482|ref|XP_009827273.1|5.046e-1938.97hypothetical protein H257_04453 [Aphanomyces astac... [more]
gi|813150545|ref|XP_012200919.1|9.002e-1931.63hypothetical protein SPRG_06720 [Saprolegnia paras... [more]
gi|298707504|emb|CBJ30106.1|9.014e-1927.51Similarities to Heat shock protein 70-probable alt... [more]
gi|669171295|ref|XP_008620996.1|2.460e-1832.14hypothetical protein SDRG_16559 [Saprolegnia dicli... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3802rna3802Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications