rna38, rna38 (mRNA) Nannochloropsis gaditana

Overview
Namerna38
Unique Namerna38
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1350
Alignment locationCM002455.1:109834..111719 -

Link to JBrowse

Properties
Property NameValue
ProductGlycosyltransferase AER61, uncharacterized
Orig transcript idgnl|cribi|Naga_100568g5.697.mrna
Orig protein idgnl|cribi|Naga_100568g5.697
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:109834..111719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100568g5gene36Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna38rna38-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30639.1cds38Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna38 ID=rna38|Name=rna38|organism=Nannochloropsis gaditana|type=mRNA|length=1350bp
GGAGACTTTTCTCATCCTCGGTCGAAGATGCAGTTACATCTATATTTTCA
TAGTTTTTTTCTAGCCGGTATCATGATTGGCTTCTCGTTGCCTCAACCTG
TAGCCTGCCAAGCGCTTCAAGGAGTGGAGAATCGCGGGATGGCCGCTAAC
CGTGCCCTGCGGCCGCGATCTATCCAAGAAAACATAGTAGAGGGGGTGCA
GCAACCACAAGAAAATCTGCTGGCAATGGATGGAGAGCAAGACTTACCTA
ATGTCATCGACGCGGACCTAGACATAGGTCTCGAAGAGAAAATCTCACGA
ATTTCAATCGATGCGGATGATCATGCTGGGACGAGGCTTGTTAAAACAGA
GCAAACTGTCCAAGATGAGGCACGTCTTCGCTCTCAACACTCTTCAAATC
CACGTTTCTTGGCAGCAGCGTTAGGGAAGCAAACAAATCCCTTATCACGA
TCCTTTCCACTAGCATCAAAAGATCTGGAAATGTCGTCAACCGGCATAAA
TTCCCCCACTTTATCGTCCTCCCTCGGTTCCCCGCCTATCCCCCCTCGGC
GTCTTCAGCAAACCATCGAGCACCTGGCCAGACGCGCTCCGGATCCATTG
GAACCTAAAGTCATGCCAAGCGTCAGTAGGAAGGAAGGAAGTGCGTGGGC
GGAGACGACGCGGACAGGGAAATCTACTTTCTCACTTTTTGAGTCTGAAG
AAAAAGGCATGAAAGTAAGGGAACGGGCAATACCGACGTTCCAGAAGGCG
ATAGAAGTGGACGCTGCAGGCCAAAGCCTTCCCACTGATCTACTCTCTGA
AAGTCAATTTCTGAAAGGAAAAAGGCAAGACGGCCGCGGCTCATTGCCGA
CTTTGGGGAAAGCACTCGACTCGTTGGTGACAGGAGAGGATTTTAAGGGT
AAAGACACCGGTGTGGAATCTGATCGGGAAGGGTTACTGAAAATGCAAGC
GGGTGATAATGGACAATTTTTCCGAAACGTTGAGAAGGCGGCAACGAAAG
GATCAATGAAGGCTGGAGAGTCGGTGGAGGAAGAAAAGGATATGACGGGG
AAAAATCCGTTCATGCGTTTAAGATAGAAACCATCCATCAGTTGGAGGAG
AATGTCAGGATGCGAATGTAAGGAACTTCGTGACAGAGGCTGCTATATTT
GAAAGACAGGAGGGGGAAACGGCCAATGCGAGGCGAGGATGCAAGCCCTT
CACGAACGTAGTGGTGAGGAGGTTGGTTCATCTCAAGTCTTGAGCGTCTC
ATAAATAAAAGCCACGACAAGAAAAGAAATGTATATCATGACAAAAACAA
AGCATGAGCTTTACGATAATGTCAATATTTAATGTCGGCCTTGATAAATG
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protein sequence of rna38

>rna38-protein ID=rna38-protein|Name=rna38|organism=Nannochloropsis gaditana|type=polypeptide|length=184bp
MAAFFRRQILGAGSANAHRDTQQLLQPSTQPYILLVDRAASRLLKDNSTR
TFEEITRVLREEGGLTNLEAVRMEDIPEEGQFEKVMRASILIGVHGAALT
NMVWQPPVDSTVIEIGFQPRKPDYPNMARVVGRAYRYLAAEGVEEKIDLN
PIAWKRVYVDSRKLLAVVQDVLVERTERKEWLCC
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mRNA from alignment at CM002455.1:109834..111719-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna38 ID=rna38|Name=rna38|organism=Nannochloropsis gaditana|type=mRNA|length=1886bp|location=Sequence derived from alignment at CM002455.1:109834..111719- (Nannochloropsis gaditana)
TGCAGGCTGGTGGTTGAAGACAGGGTCGAGGGCGGGGAGGGGGAAGGCGA
AGGGCCGTGACATCCTTGCAGTTGCTGGAGTCTCGGGCCAGCCGCACAAG
CCCCTCCCTCTTGTCTCCCAGCCTTCCCGACGCTGCCTTGCTCACCCTCC
CCTGCTGCCACATGCCCTCCCTCGTCGTGACCGCAACCCCCCTTTGCCCT
TTCGCCCCCTCTCCTCAGCTCCATCCTCTTCGATGACCTCTGGATCCGTC
CCTACGGGCGCTGGCTCTACCCCGTCCACTCCTTCTTCCCCGAGGTCACC
GACTTGACCAAGCAGGTGGTCACCTACGGCCCGCACGTGGACGCCCGGTA
GGGAGGGAGGGAGGGAGGGAGGAAGAGAAAGAGGATGTGTCCGGCTTGGT
TGCGTCCCCTTGCGTTTTCTGCGCCTGGGGTGGTGCTGGTGGGAAGATTT
AACCGTGGACAACGCGGACGGACCGCCATGTTTTCTTGGTGGTCAAATTT
CTCAGCCGTCGTGTCCTGGATGATGCGGGAATGCCTGACTTGCATACACA
AGGACCGTTCCCCACCTTGTCCTCCCCTCCCCTCCCGCTGCATCCATGGC
AACTTGCCCCCAACCTCGGGTCTTGCAAGGCCCGGTTTCCCTCACGTTTC
CTCCCTGTCCTGTCCTCGTGTGACTCAGGTGGAACCAAATGGCGGCCTTC
TTCCGAAGGCAAATCCTGGGGGCGGGGTCCGCCAACGCCCATCGAGACAC
CCAGCAGCTCTTGCAGGTGGGTAGTCTCCTCACAGGCGGGAAAGGCCTGT
CAGGGTCCCAAGGACTGCTGGCTCGAGAGAGACGTGGTCCTTGACTTCCC
TCCCCCCTTCCCTCTTTCTCCCACCCCACCAAAGGAGGGTTTGTCTTGAC
CGGTGGCTTTAACTTTACAGGTCTTGTTCACGCATGTTCTTTCCCTTTAG
CCCTCCACGCAGCCGTACATACTCTTGGTGGACAGAGCAGCCTCACGTCT
CTTGAAGGACAACAGCACACGCACCTTCGAAGAGATCACGCGCGTGTTGC
GGGAAGAAGGGGGGCTGACCAATCTGGAGGCGGTCAGGATGGAGGATATA
CCAGAGGTATGGGTGGAAGGGAAGGAGGAAGAGGAAAGGAACAGAGGCTT
CGCATCCCTGGATGTGGCGTAGAAAAGGCGGGTCCCACGACGATCGCGCC
CCCTGCACGGCCTCCTCTTTTCTCACATTCCTTTCTTGTCTTTGCTTCCC
TGCCCCCGCCGCGTTGTTTTGCAGGAGGGTCAGTTTGAGAAGGTCATGCG
GGCAAGCATCCTCATCGGAGTGCACGGGGCAGCCTTGACCAACATGGTTT
GGCAGCCACCCGTCGACTCCACCGTCATTGAAATAGGTTTTCAACCAAGA
AAGGTTGGTGTGACTTGATAAAGCTGGACTTTGTGGGCGGGTGTGAATGT
TGCCATGGGTGATGGATGATCGAAAGGTAGTTTGCTCTGTATTCGCTGGG
TCCATATCACTGCTATCATTTTACCTTTTCCATTCGCACATTTCTCAGCC
GGATTATCCAAACATGGCACGAGTTGTGGGTCGTGCTTACAGATATTTGG
CAGCGGAAGGCGTGGAAGAAAAAATAGATCTTAATCCCATAGCCTGGAAA
CGAGTCTATGTTGACTCAAGGAAACTGCTTGCGGTCGTTCAGGACGTTCT
GGTGGAGCGGACGGAGCGCAAAGAGTGGTTGTGTTGTTGATTACGGTAAA
CAATAGAAATCTCTTGATGATTAAAAGAAAAAAAGAACGAAGTAAAGCTG
AAGGAGTTACACGCACGGATTGAAACAAGAAAATCCAATGGTATGCCATG
GTCGGTGCCTGTACACGGGAGGTTGTGAAATTCAAA
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Coding sequence (CDS) from alignment at CM002455.1:109834..111719-

>rna38 ID=rna38|Name=rna38|organism=Nannochloropsis gaditana|type=CDS|length=2220bp|location=Sequence derived from alignment at CM002455.1:109834..111719- (Nannochloropsis gaditana)
CCGGATTATCCAAACATGGCACGAGTTGTGGGTCGTGCTTACAGATATTT
GGCAGCGGAAGGCGTGGAAGAAAAAATAGATCTTAATCCCATAGCCTGGA
AACGAGTCTATGTTGACTCAAGGAAACTGCTTGCGGTCGTTCAGGACGTT
CTGGTGGAGCGGACGGAGCGCAAAGAGTGGTTGTGTTGTTGAGAGGGTCA
GTTTGAGAAGGTCATGCGGGCAAGCATCCTCATCGGAGTGCACGGGGCAG
CCTTGACCAACATGGTTTGGCAGCCACCCGTCGACTCCACCGTCATTGAA
ATAGGTTTTCAACCAAGAAAGCCCTCCACGCAGCCGTACATACTCTTGGT
GGACAGAGCAGCCTCACGTCTCTTGAAGGACAACAGCACACGCACCTTCG
AAGAGATCACGCGCGTGTTGCGGGAAGAAGGGGGGCTGACCAATCTGGAG
GCGGTCAGGATGGAGGATATACCAGAGATGGCGGCCTTCTTCCGAAGGCA
AATCCTGGGGGCGGGGTCCGCCAACGCCCATCGAGACACCCAGCAGCTCT
TGCAGCCGGATTATCCAAACATGGCACGAGTTGTGGGTCGTGCTTACAGA
TATTTGGCAGCGGAAGGCGTGGAAGAAAAAATAGATCTTAATCCCATAGC
CTGGAAACGAGTCTATGTTGACTCAAGGAAACTGCTTGCGGTCGTTCAGG
ACGTTCTGGTGGAGCGGACGGAGCGCAAAGAGTGGTTGTGTTGTTGAGAG
GGTCAGTTTGAGAAGGTCATGCGGGCAAGCATCCTCATCGGAGTGCACGG
GGCAGCCTTGACCAACATGGTTTGGCAGCCACCCGTCGACTCCACCGTCA
TTGAAATAGGTTTTCAACCAAGAAAGCCCTCCACGCAGCCGTACATACTC
TTGGTGGACAGAGCAGCCTCACGTCTCTTGAAGGACAACAGCACACGCAC
CTTCGAAGAGATCACGCGCGTGTTGCGGGAAGAAGGGGGGCTGACCAATC
TGGAGGCGGTCAGGATGGAGGATATACCAGAGATGGCGGCCTTCTTCCGA
AGGCAAATCCTGGGGGCGGGGTCCGCCAACGCCCATCGAGACACCCAGCA
GCTCTTGCAGCCGGATTATCCAAACATGGCACGAGTTGTGGGTCGTGCTT
ACAGATATTTGGCAGCGGAAGGCGTGGAAGAAAAAATAGATCTTAATCCC
ATAGCCTGGAAACGAGTCTATGTTGACTCAAGGAAACTGCTTGCGGTCGT
TCAGGACGTTCTGGTGGAGCGGACGGAGCGCAAAGAGTGGTTGTGTTGTT
GAGAGGGTCAGTTTGAGAAGGTCATGCGGGCAAGCATCCTCATCGGAGTG
CACGGGGCAGCCTTGACCAACATGGTTTGGCAGCCACCCGTCGACTCCAC
CGTCATTGAAATAGGTTTTCAACCAAGAAAGCCCTCCACGCAGCCGTACA
TACTCTTGGTGGACAGAGCAGCCTCACGTCTCTTGAAGGACAACAGCACA
CGCACCTTCGAAGAGATCACGCGCGTGTTGCGGGAAGAAGGGGGGCTGAC
CAATCTGGAGGCGGTCAGGATGGAGGATATACCAGAGATGGCGGCCTTCT
TCCGAAGGCAAATCCTGGGGGCGGGGTCCGCCAACGCCCATCGAGACACC
CAGCAGCTCTTGCAGCCGGATTATCCAAACATGGCACGAGTTGTGGGTCG
TGCTTACAGATATTTGGCAGCGGAAGGCGTGGAAGAAAAAATAGATCTTA
ATCCCATAGCCTGGAAACGAGTCTATGTTGACTCAAGGAAACTGCTTGCG
GTCGTTCAGGACGTTCTGGTGGAGCGGACGGAGCGCAAAGAGTGGTTGTG
TTGTTGAGAGGGTCAGTTTGAGAAGGTCATGCGGGCAAGCATCCTCATCG
GAGTGCACGGGGCAGCCTTGACCAACATGGTTTGGCAGCCACCCGTCGAC
TCCACCGTCATTGAAATAGGTTTTCAACCAAGAAAGCCCTCCACGCAGCC
GTACATACTCTTGGTGGACAGAGCAGCCTCACGTCTCTTGAAGGACAACA
GCACACGCACCTTCGAAGAGATCACGCGCGTGTTGCGGGAAGAAGGGGGG
CTGACCAATCTGGAGGCGGTCAGGATGGAGGATATACCAGAGATGGCGGC
CTTCTTCCGAAGGCAAATCCTGGGGGCGGGGTCCGCCAACGCCCATCGAG
ACACCCAGCAGCTCTTGCAG
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Synonyms
Publications