rna3797, rna3797 (mRNA) Nannochloropsis gaditana

Overview
Namerna3797
Unique Namerna3797
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length647
Alignment locationCM002462.1:76611..77450 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101541g1.2983.mrna
Orig protein idgnl|cribi|Naga_101541g1.2983
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:76611..77450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101541g1gene3655Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3797rna3797-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26886.1cds3788Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3797 ID=rna3797|Name=rna3797|organism=Nannochloropsis gaditana|type=mRNA|length=647bp
CCTCCTCTGCGCTTGGCCTCATCTCGTGTCCCCCTCCCTCCGCCCGCCCT
TTTTCTCCTCCCAGGGACTTCCCACCCTCCTTCTCTCCGCTCCTGCTTCC
CCCTCGTCCTCCCGCTCTCCCCTCCTCCATCCCTCCTCCTCCCCCTCCTC
CCCATCTTCCCTCTTCCTCGCCCCAGCCGACCCCATCCCCCCTCCGTTGA
CCTGTCCCTATTCCTCATTTCCCGTCACTTCCGAGCAAAAGCGGCGAAGC
AACGAAGAGACAGGAATGGATGCGTATGGAAACGAGCTAAAGCGCCCTAT
TTTGTCACCTCCGTCCAAGGGGGGGGACGGCAAGTTGTCATGTTGAACAA
AAACACTTTCAGGATAGAACTGTAGGAAAAACTGGAATGGACAGAAACTA
GAAGTCCCAAAGCCTCTGATATATCCATGCCCTAGTTTTTGTAATTATTG
AAAGAAAAACGGGTGCCATGCCAGAGGAGTGCGGCCTGCGAAACTAGGTT
ACGACCCATGCTAGTCGAGTTTTAAGTGCAACGTAAATTTATTTTCTCTT
GATCTCGGGCACGTTGGGTATCAACAATTGTCATTTGACACGTGAATACC
CATTTACCTTTGCGTGCTGAGGGAGACCTGGCAACTAAAGCAAGGAC
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protein sequence of rna3797

>rna3797-protein ID=rna3797-protein|Name=rna3797|organism=Nannochloropsis gaditana|type=polypeptide|length=157bp
MFPSPPTGPSILTPPGNMTSLIHEKHLDALVSFFQSWVPLADKTVYLTVP
GMDQALAPLGETLGFDIGMLKVIHVPCLSALGHPHPFAIHQRQTRFLPPA
GTVVRPRDIWKSVDPFFPVRSHLLPHHLLRPTQAHRHPSLPLHHDLHEPQ
PPLPPLR
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mRNA from alignment at CM002462.1:76611..77450+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3797 ID=rna3797|Name=rna3797|organism=Nannochloropsis gaditana|type=mRNA|length=840bp|location=Sequence derived from alignment at CM002462.1:76611..77450+ (Nannochloropsis gaditana)
AtgttcccctctccgcccacaGGGCCGTCGATCCTGACTCCTCCAGGAAA
CATGACAAGCCTTATACATGAAAAGCATTTGGATGCTCtggtctccttct
ttcaaaGCTGGGTGCCACTGGCGGACAAGACGGTGTACCTGACCGTGCCC
GGGATGGACCAGGCCCTAGCCCCGCTGGGCGAGACTTTGGGCTTCGATAT
CGGGATGCTGAAGGTAATGTGGAACCTGCTAGGATACATACGCTTTGTCC
ACTCTTCTCCCGAGGTGGCATTTTAAAAGATTAAGCAGTCTACAGTGGGG
AGCGTTGCCtgatttccccctccctttcccttctcttcttccctctccct
tttcctctcagTACGTGCTAGCCATGTTCCTTGCCTATCCGCTCTCGGGC
ATCCTCACCCTTTTGCCATCCACCAACGCCAAAcacgctttctccctcct
gctggGACTGTGGTACGCCCAAGAGATATTTGGAAATCAGGTGCGGTGGG
TCTGGGGAATTGTCGGGGCGAGGCATAGGACAGGGTGGCGCCGCgggggg
gacaagaaggggatgTGAGGGTGCGGGTGATGTGAGAGCGCAGTTTGCAA
CGAAAAATGGAGGCTTGTCACGATTCGTAAACGTTCAGGTGccgaccctt
cctcccctccctccctccctccctccctccctccctccctcttcccccct
cagTGGATCCATTCTTTCCTGTCCGCAGCCATCTCTTACCTCATCATCTG
CTTCGGCCCACGCAAGCACATCGCCACCCtagtcttcctcttcaccatGA
CCTACATGAGCCTCAGCCACCTCTACCGCCTTTACGTTGA
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Coding sequence (CDS) from alignment at CM002462.1:76611..77450+

>rna3797 ID=rna3797|Name=rna3797|organism=Nannochloropsis gaditana|type=CDS|length=1422bp|location=Sequence derived from alignment at CM002462.1:76611..77450+ (Nannochloropsis gaditana)
AtgttcccctctccgcccacaGGGCCGTCGATCCTGACTCCTCCAGGAAA
CATGACAAGCCTTATACATGAAAAGCATTTGGATGCTCtggtctccttct
ttcaaaGCTGGGTGCCACTGGCGGACAAGACGGTGTACCTGACCGTGCCC
GGGATGGACCAGGCCCTAGCCCCGCTGGGCGAGACTTTGGGCTTCGATAT
CGGGATGCTGAAGGTAATCCATGTTCCTTGCCTATCCGCTCTCGGGCATC
CTCACCCTTTTGCCATCCACCAACGCCAAAcacgctttctccctcctgct
ggGACTGTGGTACGCCCAAGAGATATTTGGAAATCAGTGGATCCATTCTT
TCCTGTCCGCAGCCATCTCTTACCTCATCATCTGCTTCGGCCCACGCAAG
CACATCGCCACCCtagtcttcctcttcaccatGACCTACATGAGCCTCAG
CCACCTCTACCGCCTTTACGTTGAAtgttcccctctccgcccacaGGGCC
GTCGATCCTGACTCCTCCAGGAAACATGACAAGCCTTATACATGAAAAGC
ATTTGGATGCTCtggtctccttctttcaaaGCTGGGTGCCACTGGCGGAC
AAGACGGTGTACCTGACCGTGCCCGGGATGGACCAGGCCCTAGCCCCGCT
GGGCGAGACTTTGGGCTTCGATATCGGGATGCTGAAGGTAATCCATGTTC
CTTGCCTATCCGCTCTCGGGCATCCTCACCCTTTTGCCATCCACCAACGC
CAAAcacgctttctccctcctgctggGACTGTGGTACGCCCAAGAGATAT
TTGGAAATCAGTGGATCCATTCTTTCCTGTCCGCAGCCATCTCTTACCTC
ATCATCTGCTTCGGCCCACGCAAGCACATCGCCACCCtagtcttcctctt
caccatGACCTACATGAGCCTCAGCCACCTCTACCGCCTTTACGTTGAAt
gttcccctctccgcccacaGGGCCGTCGATCCTGACTCCTCCAGGAAACA
TGACAAGCCTTATACATGAAAAGCATTTGGATGCTCtggtctccttcttt
caaaGCTGGGTGCCACTGGCGGACAAGACGGTGTACCTGACCGTGCCCGG
GATGGACCAGGCCCTAGCCCCGCTGGGCGAGACTTTGGGCTTCGATATCG
GGATGCTGAAGGTAATCCATGTTCCTTGCCTATCCGCTCTCGGGCATCCT
CACCCTTTTGCCATCCACCAACGCCAAAcacgctttctccctcctgctgg
GACTGTGGTACGCCCAAGAGATATTTGGAAATCAGTGGATCCATTCTTTC
CTGTCCGCAGCCATCTCTTACCTCATCATCTGCTTCGGCCCACGCAAGCA
CATCGCCACCCtagtcttcctcttcaccatGACCTACATGAGCCTCAGCC
ACCTCTACCGCCTTTACGTTGA
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Synonyms
Publications