rna3796, rna3796 (mRNA) Nannochloropsis gaditana

Overview
Namerna3796
Unique Namerna3796
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length507
Alignment locationCM002462.1:75185..75831 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101541g2.2982.mrna
Orig protein idgnl|cribi|Naga_101541g2.2982
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:75185..75831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101541g2gene3654Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3796rna3796-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26885.1cds3787Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3796 ID=rna3796|Name=rna3796|organism=Nannochloropsis gaditana|type=mRNA|length=507bp
ATGGCCAATATAAGACGTTGGTTGCGGACCCAAGCAGGGCAAGGAGGCAT
AAAGGAGAAGGGCGCGTCTAGTTTTTTTTTTCCTTCTCGTCGCGAGCAGC
TTTCCCTCCCTAGCATGCCTACTCCAGCGAGTAAAAGTGAACAACATAAA
GAACGACGCCGCATTCCCAATGCCCCACAAATACCAATGCCTAAGGTCGT
TACCAAAATCTTAGCGGGGGGCGCAGACCCCAGCCTTGAGGCCGAAAAGG
CACCCGTCACGGGGGAATGGCAAAAAATTCCCCACGAAGAGGACGCCGCG
GCTTCCTCCCACTCTCCTTCCTCCTTCTTCCACGGGATATTGGTGACCTT
GTACGGAGAAATGGCGCCCAGGGACTTGGTACGCGTCTGCTGGTTCGCCG
GGACGCTCTTTTTCATCATTGGGGGCTACTGGCTCCTCCGCTCCCTCAAG
GTGAGGGGGAAGGAGGGATGGAGGGGAGGGGAGGAGGAAGGATTAGTACG
GGTCTGA
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protein sequence of rna3796

>rna3796-protein ID=rna3796-protein|Name=rna3796|organism=Nannochloropsis gaditana|type=polypeptide|length=124bp
PPLRLASSRVPLPPPALFLLPGTSHPPSLRSCFPLVLPLSPPPSLLLPLL
PIFPLPRPSRPHPPSVDLSLFLISRHFRAKAAKQRRDRNGCVWKRAKAPY
FVTSVQGGGRQVVMLNKNTFRIEL
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mRNA from alignment at CM002462.1:75185..75831+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3796 ID=rna3796|Name=rna3796|organism=Nannochloropsis gaditana|type=mRNA|length=647bp|location=Sequence derived from alignment at CM002462.1:75185..75831+ (Nannochloropsis gaditana)
CCTCCTCTGCGCTTGGCCTCATCTcgtgtccccctccctccgcccgccct
ttttctcctcccagggacttcccaccctccttctctccgctcctgcttcc
ccctcgtcctcccgctctcccctcctccatccctcctcctccccctcctc
cccatcttccctcttcctcgccccagccgaccccatcccccctccgtTGA
CCTGTCCCTATTCCTCATTTCCCGTCACTTCCGAGCAAAAGCGGCGAAGC
AACGAAGAGACAGGAATGGATGCGTATGGAAACGAGCTAAAGCGCCCTAT
TTTGTCACCTCCgtccaaggggggggacggcaaGTTGTCATGTTGAACAA
AAACACTTTCAGGATAGAACTGTAGGAAAAACTGGAATGGACAGAAACTA
GAAGTCCCAAAGCCTCTGATATATCCATGCCCTAGTTTTTGTAATTATTG
AAAGAAAAACGGGTGCCATGCCAGAGGAGTGCGGCCTGCGAAACTAGGTT
ACGACCCATGCTAGTCGAGTTTTAAGTGCAACGTAAATTTATTTTCTCTT
GATCTCGGGCACGTTGGGTATCAACAATTGTCATTTGACACGTGAATACC
CATTTACCTTTGCGTGCTGAGGGAGACCTGGCAACTAAAGCAAGGAC
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Coding sequence (CDS) from alignment at CM002462.1:75185..75831+

>rna3796 ID=rna3796|Name=rna3796|organism=Nannochloropsis gaditana|type=CDS|length=375bp|location=Sequence derived from alignment at CM002462.1:75185..75831+ (Nannochloropsis gaditana)
CCTCCTCTGCGCTTGGCCTCATCTcgtgtccccctccctccgcccgccct
ttttctcctcccagggacttcccaccctccttctctccgctcctgcttcc
ccctcgtcctcccgctctcccctcctccatccctcctcctccccctcctc
cccatcttccctcttcctcgccccagccgaccccatcccccctccgtTGA
CCTGTCCCTATTCCTCATTTCCCGTCACTTCCGAGCAAAAGCGGCGAAGC
AACGAAGAGACAGGAATGGATGCGTATGGAAACGAGCTAAAGCGCCCTAT
TTTGTCACCTCCgtccaaggggggggacggcaaGTTGTCATGTTGAACAA
AAACACTTTCAGGATAGAACTGTAG
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Synonyms
Publications