EWM26885.1, cds3787 (CDS) Nannochloropsis gaditana

Overview
NameEWM26885.1
Unique Namecds3787
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:75185..75559 +

Link to JBrowse

Properties
Property NameValue
Start range75185
Start range.
Protein idEWM26885.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101541g2.2982.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:75185..75559 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
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BLAST of EWM26885.1 vs. NCBI_GenBank
Match: gi|585109003|gb|EWM26885.1| (hypothetical protein Naga_101541g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 237.269 bits (604), Expect = 5.497e-79
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0 
Query:    1 PPLRLASSRVPLPPPALFLLPGTSHPPSLRSCFPLVLPLSPPPSLLLPLLPIFPLPRPSRPHPPSVDLSLFLISRHFRAKAAKQRRDRNGCVWKRAKAPYFVTSVQGGGRQVVMLNKNTFRIEL 124
            PPLRLASSRVPLPPPALFLLPGTSHPPSLRSCFPLVLPLSPPPSLLLPLLPIFPLPRPSRPHPPSVDLSLFLISRHFRAKAAKQRRDRNGCVWKRAKAPYFVTSVQGGGRQVVMLNKNTFRIEL
Sbjct:    1 PPLRLASSRVPLPPPALFLLPGTSHPPSLRSCFPLVLPLSPPPSLLLPLLPIFPLPRPSRPHPPSVDLSLFLISRHFRAKAAKQRRDRNGCVWKRAKAPYFVTSVQGGGRQVVMLNKNTFRIEL 124
The following BLAST results are available for this feature:
BLAST of EWM26885.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585109003|gb|EWM26885.1|5.497e-79100.00hypothetical protein Naga_101541g2, partial [Nanno... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3796rna3796Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications