rna3793, rna3793 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3793
Unique Name	rna3793
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1877
Alignment location	CM002462.1:68757..69938 -

Link to JBrowse

Properties


Property Name	Value
Product	transmembrane protein
Orig transcript id	gnl\|cribi\|Naga_101526g1.7422.mrna
Orig protein id	gnl\|cribi\|Naga_101526g1.7422
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:68757..69938 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101526g1	gene3651	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3793	rna3793-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26889.1	cds3784	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:68757..69938-
coding sequence from alignment at CM002462.1:68757..69938-

mRNA sequence

>rna3793 ID=rna3793|Name=rna3793|organism=Nannochloropsis gaditana|type=mRNA|length=1877bp
GCACAACCCAGGATGATTCGACGCGTACCATGTTACACTGAATAGCATAA
AATAGATTGTGTGGTCGCGTTGGCATGGATTTCATGGGTGTTTTTACTCG
TTGCCGCCCTTCTAGGACACGCTTTCAGTCGCATTGGGCAAGCAGTATCT
TGTGACCAACGAAGGACTAAGAGCATGAAAATACCGGAGTTGCAGCTGCT
GGGTGACGTCCTGGCTTTTTTGAAGTCCAAGGGGTTTGTAAAGACGGCCG
CTACTTTGATCAAGGAGGGGAAGGGAAAAGGGGCGTTGTCGTTGTCGACA
GGGTCGCGTGATTTACTGGACCTGTACGTGAAGGCCGTGGGGGTTGTCCC
GCGGCCGGAAACGCCATCGTCGTCGTCGGACGATGATAGTGACAGCAGCA
GCAGCAGTGAAAGTGAGGAGAAGGGTGAAGCTAGGAAAAGGGACGTAAAA
GGGCCTATCACGCCGGCCCTGAAGAAGAGACAGGCTGCCGCGGCGTTGAC
GACTCCAGCTGCCGCCTCCTCCTCGTCCTCCTCCTCTTCGTCCTCCTCCT
CCTCCTCGTCTTCGTCCTCCGAAAGTGAAAACGAAGAGGACCGAAAGAGC
CATAAAGAGCTGTCTGAGAAGCAAAACACTCCATCCCAGATGAACGGCAC
CGCGAAGGGCGCCTCTTCTTCCTCGTCTTCCTCAAGCGAGGAGGAGGAAG
AAGAGGAAGCTGAGACAACCATTCCGACGAAGAAGCTTTCAAACACCGCG
CACTCTACCCGTCTTCGCCCCGCTTCTAAACCTCTTCCTTCCAAAACTGA
GGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCAGGAGAGTCGTCGA
GCGAGAGTGAGAGTGCGAGCGAGGAGGAGGAGAAGGCAGCTGCTCCAGCA
ACCAAGAAATCATTGCCCTCCCACAAGCGAAAAGCGGCGGACATGTCTTC
CTCCTCCTCCTCTGACTCCTCCAGTAACGAGGAGGAGGAGGAGGAGGGGA
AGGAAGAGGAGGAGGAAAGGAAGAGAAAGAATTCCCCCCCCGCAAAAGGA
GGAAAGTGGAGGGTACTGAGACGCATTTAAATGGAAAGCACCCGAAAAGC
AGCGACAGCGACAACAGTAGCGACAGCAACAGTGACAGTGAGAGCAGCGA
CGACAGTGACAGCAGCAGCGAAAGGTCAGCAACATTTTCTCCCCCCCGTC
TTGCCTCTTTCTTTCCCTCCTTCCCTCCCTCCCTCTTTCATCCCTTCCCC
TCCTCCCACTCCCTTCCCTTCAGCGAGAGCGAGGACGAGGACGCGGTCGC
TGCCCGGAAGGAAGCGGCAGAAACGGAGAGACGGCGCAAGTCGGTGGAGG
CCGCCCTCGCCTGGCAAACCGCGCAGGAGGAAAAAATGAAGGCGGGGACG
GGCGCAAGTCCAAGCACCTTAACACCCAAAAAGGGCGGGAAAGAAGGGCG
CCGGGTATCCGGGGAGGCGTTTCGGCGCGTGGACGACGAGTACTGGGGGC
AGCAGATCAAGGACGATCGACTCAAGGACAATTCATGTGAGGGCAGGCGG
GAGGGAGGGAGGGAGGGAGGAAGGTAGGGAGGGAAGGAGGAGAGCTTGTA
CTTGAAGGCATGGGACTGATGCGTCGTCCTTTTCTGTCTATATCCTGTCG
CCCTCCCTCGTTCTCCTCTCCTTGCCTCCCGCAGACGCCGGGACCTTCGG
GAGCGGCGGGTACGGGGCCAAGGCAAGCGAGAAGCTGATGACGGTCCGAG
GGAAGGATTTCCGGCACGAGAAGACGAAGAAGAAGCGGGGGAGCTACAGG
GGGGGGACGATTTCCTTGGAGAGTCACTCGATCAAGTACGACTACGGCTC
GGACGTGTAGAAGGGAGGGACGGAGGG

protein sequence of rna3793

>rna3793-protein ID=rna3793-protein|Name=rna3793|organism=Nannochloropsis gaditana|type=polypeptide|length=215bp
MGMLDGAAASSPRLARAAPSHLLVFHNMPPSCPAVELPSVSKMSSSQATT
IPRRRVLTRIPSMGGFSLPSTSFLSSSSPPCGRSSRALGRGLTFLLIGTF
LLGFVHFVKAETQETPEVGSRDGNVAFFRTQTLEEGPLAKEAGAPTTRMN
KEEGDRGVEEESLSRGFWPAFLNSLSMILVTELGDKTFFIAAVLAMRYDR
LLIFGGAICEGGGGR

mRNA from alignment at CM002462.1:68757..69938-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3793 ID=rna3793|Name=rna3793|organism=Nannochloropsis gaditana|type=mRNA|length=1182bp|location=Sequence derived from alignment at CM002462.1:68757..69938- (Nannochloropsis gaditana)
AGAGGTCAATTGCTACTATCTTGACAGAGGGCAACCAACAAAAGAAAAGG
GAAGGGCGAAACAACACAAAATAGCGGCCCAACCCATCATGGGAATGCTC
GACGGAGCAGCAGCATCATCGCCCAGACTCGCACGAGCAGCCCCGTCCCA
CTTGCTTGTTTTCCATAACATGCCGCCCTCATGCCCCGCGGTTGAGCTGC
CTTCAGTTTCCAAGGTGATCGATGAATGTGCATCATTTAAAGTGTGATGA
TCTATGGATCTGGGCTTCGAATGATTAGAAAGGTCGCTACTTACACCTTC
ATCGTGCGCCCACATATGCCCTTCTTCCAACGCCTGTCCTGGACAATAAT
TCACCCGACAGATGTCAAGCAGCCAGGCCACGACCATACCAAGAAGAAGA
GTACTGACTCGTATACCCTCCATGGGTGGATTCTCCCTTCCCTCCACCTC
CTTCCTCTCCTCCTCCTCTCCTCCTTGCGGGCGGTCGTCTCGTGCCTTGG
GGCGCGGCCTCACCTTCCTCTTGATCGGCACCTTTCTCCTGGGTTTCGTC
CATTTTGTGAAAGCCGAAACACAGGTGGATCGCGTGCTTTTGCTCGTCTC
CTTCTCTTCCTCTTTTTTTGGGGAAGGGGAAAGCGTGGACGCTTTCCCCT
GATGGCTTCATTCGTGCTTAAATGCGCCATACGGACTCTTTCCCTCATTT
ATTTTTTCGTCCTCTTCTTCATTTTTTTCCCTTCTCCTCACAGGAGACCC
CAGAAGTTGGCAGCCGCGACGGCAATGTGGCATTCTTTCGGACCCAGACG
TTGGAGGAGGGGCCCTTGGCCAAGGAAGCCGGGGCCCCGACGACGAGGAT
GAACAAGGAAGAGGGGGACAGGGGCGTGGAGGAGGAGGTAGGGCCGAGCC
AGGAGTGAGACGTGGTGGACACTGAATCGGAGGGGACTCGGGGGTTGTGG
ACCCGCAGGCCTCCTTACTACCCTCCCGCTTCCTCCTCCCTCCTTTCCTC
CTCGATCATTCCCCGTCCAGAGCCTTTCCCGGGGGTTCTGGCCCGCATTT
CTCAACTCCTTGTCGATGATCCTCGTCACGGAGCTGGGGGACAAGACCTT
CTTTATAGCCGCCGTCCTTGCCATGCGATACGACCGTCTCCTCATCTTTG
GGGGGGCCATCTGTGAGGGAGGAGGAGGGAGG

Coding sequence (CDS) from alignment at CM002462.1:68757..69938-

>rna3793 ID=rna3793|Name=rna3793|organism=Nannochloropsis gaditana|type=CDS|length=2580bp|location=Sequence derived from alignment at CM002462.1:68757..69938- (Nannochloropsis gaditana)
AGCCTTTCCCGGGGGTTCTGGCCCGCATTTCTCAACTCCTTGTCGATGAT
CCTCGTCACGGAGCTGGGGGACAAGACCTTCTTTATAGCCGCCGTCCTTG
CCATGCGATACGACCGTCTCCTCATCTTTGGGGGGGCCATCTGTGAGGGA
GGAGGAGGGAGGGAGACCCCAGAAGTTGGCAGCCGCGACGGCAATGTGGC
ATTCTTTCGGACCCAGACGTTGGAGGAGGGGCCCTTGGCCAAGGAAGCCG
GGGCCCCGACGACGAGGATGAACAAGGAAGAGGGGGACAGGGGCGTGGAG
GAGGAGATGTCAAGCAGCCAGGCCACGACCATACCAAGAAGAAGAGTACT
GACTCGTATACCCTCCATGGGTGGATTCTCCCTTCCCTCCACCTCCTTCC
TCTCCTCCTCCTCTCCTCCTTGCGGGCGGTCGTCTCGTGCCTTGGGGCGC
GGCCTCACCTTCCTCTTGATCGGCACCTTTCTCCTGGGTTTCGTCCATTT
TGTGAAAGCCGAAACACAGATGGGAATGCTCGACGGAGCAGCAGCATCAT
CGCCCAGACTCGCACGAGCAGCCCCGTCCCACTTGCTTGTTTTCCATAAC
ATGCCGCCCTCATGCCCCGCGGTTGAGCTGCCTTCAGTTTCCAAGAGCCT
TTCCCGGGGGTTCTGGCCCGCATTTCTCAACTCCTTGTCGATGATCCTCG
TCACGGAGCTGGGGGACAAGACCTTCTTTATAGCCGCCGTCCTTGCCATG
CGATACGACCGTCTCCTCATCTTTGGGGGGGCCATCTGTGAGGGAGGAGG
AGGGAGGGAGACCCCAGAAGTTGGCAGCCGCGACGGCAATGTGGCATTCT
TTCGGACCCAGACGTTGGAGGAGGGGCCCTTGGCCAAGGAAGCCGGGGCC
CCGACGACGAGGATGAACAAGGAAGAGGGGGACAGGGGCGTGGAGGAGGA
GATGTCAAGCAGCCAGGCCACGACCATACCAAGAAGAAGAGTACTGACTC
GTATACCCTCCATGGGTGGATTCTCCCTTCCCTCCACCTCCTTCCTCTCC
TCCTCCTCTCCTCCTTGCGGGCGGTCGTCTCGTGCCTTGGGGCGCGGCCT
CACCTTCCTCTTGATCGGCACCTTTCTCCTGGGTTTCGTCCATTTTGTGA
AAGCCGAAACACAGATGGGAATGCTCGACGGAGCAGCAGCATCATCGCCC
AGACTCGCACGAGCAGCCCCGTCCCACTTGCTTGTTTTCCATAACATGCC
GCCCTCATGCCCCGCGGTTGAGCTGCCTTCAGTTTCCAAGAGCCTTTCCC
GGGGGTTCTGGCCCGCATTTCTCAACTCCTTGTCGATGATCCTCGTCACG
GAGCTGGGGGACAAGACCTTCTTTATAGCCGCCGTCCTTGCCATGCGATA
CGACCGTCTCCTCATCTTTGGGGGGGCCATCTGTGAGGGAGGAGGAGGGA
GGGAGACCCCAGAAGTTGGCAGCCGCGACGGCAATGTGGCATTCTTTCGG
ACCCAGACGTTGGAGGAGGGGCCCTTGGCCAAGGAAGCCGGGGCCCCGAC
GACGAGGATGAACAAGGAAGAGGGGGACAGGGGCGTGGAGGAGGAGATGT
CAAGCAGCCAGGCCACGACCATACCAAGAAGAAGAGTACTGACTCGTATA
CCCTCCATGGGTGGATTCTCCCTTCCCTCCACCTCCTTCCTCTCCTCCTC
CTCTCCTCCTTGCGGGCGGTCGTCTCGTGCCTTGGGGCGCGGCCTCACCT
TCCTCTTGATCGGCACCTTTCTCCTGGGTTTCGTCCATTTTGTGAAAGCC
GAAACACAGATGGGAATGCTCGACGGAGCAGCAGCATCATCGCCCAGACT
CGCACGAGCAGCCCCGTCCCACTTGCTTGTTTTCCATAACATGCCGCCCT
CATGCCCCGCGGTTGAGCTGCCTTCAGTTTCCAAGAGCCTTTCCCGGGGG
TTCTGGCCCGCATTTCTCAACTCCTTGTCGATGATCCTCGTCACGGAGCT
GGGGGACAAGACCTTCTTTATAGCCGCCGTCCTTGCCATGCGATACGACC
GTCTCCTCATCTTTGGGGGGGCCATCTGTGAGGGAGGAGGAGGGAGGGAG
ACCCCAGAAGTTGGCAGCCGCGACGGCAATGTGGCATTCTTTCGGACCCA
GACGTTGGAGGAGGGGCCCTTGGCCAAGGAAGCCGGGGCCCCGACGACGA
GGATGAACAAGGAAGAGGGGGACAGGGGCGTGGAGGAGGAGATGTCAAGC
AGCCAGGCCACGACCATACCAAGAAGAAGAGTACTGACTCGTATACCCTC
CATGGGTGGATTCTCCCTTCCCTCCACCTCCTTCCTCTCCTCCTCCTCTC
CTCCTTGCGGGCGGTCGTCTCGTGCCTTGGGGCGCGGCCTCACCTTCCTC
TTGATCGGCACCTTTCTCCTGGGTTTCGTCCATTTTGTGAAAGCCGAAAC
ACAGATGGGAATGCTCGACGGAGCAGCAGCATCATCGCCCAGACTCGCAC
GAGCAGCCCCGTCCCACTTGCTTGTTTTCCATAACATGCCGCCCTCATGC
CCCGCGGTTGAGCTGCCTTCAGTTTCCAAG

Synonyms

Publications