EWM26889.1, cds3784 (CDS) Nannochloropsis gaditana

Overview
NameEWM26889.1
Unique Namecds3784
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:69725..69850 -
Alignment locationCM002462.1:69365..69577 -
Alignment locationCM002462.1:69052..69195 -
Alignment locationCM002462.1:68757..68918 -

Link to JBrowse

Properties
Property NameValue
Start range68757
Start range.
Protein idEWM26889.1
Producttransmembrane protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101526g1.7422.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:69725..69850 -
CM002462.1supercontigCM002462.1:69365..69577 -
CM002462.1supercontigCM002462.1:69052..69195 -
CM002462.1supercontigCM002462.1:68757..68918 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR001727UPF0016
Homology
BLAST of EWM26889.1 vs. NCBI_GenBank
Match: gi|585109011|gb|EWM26889.1| (transmembrane protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 429.869 bits (1104), Expect = 3.243e-152
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0
Query:    1 MGMLDGAAASSPRLARAAPSHLLVFHNMPPSCPAVELPSVSKMSSSQATTIPRRRVLTRIPSMGGFSLPSTSFLSSSSPPCGRSSRALGRGLTFLLIGTFLLGFVHFVKAETQETPEVGSRDGNVAFFRTQTLEEGPLAKEAGAPTTRMNKEEGDRGVEEESLSRGFWPAFLNSLSMILVTELGDKTFFIAAVLAMRYDRLLIFGGAICEGGGGR 215
            MGMLDGAAASSPRLARAAPSHLLVFHNMPPSCPAVELPSVSKMSSSQATTIPRRRVLTRIPSMGGFSLPSTSFLSSSSPPCGRSSRALGRGLTFLLIGTFLLGFVHFVKAETQETPEVGSRDGNVAFFRTQTLEEGPLAKEAGAPTTRMNKEEGDRGVEEESLSRGFWPAFLNSLSMILVTELGDKTFFIAAVLAMRYDRLLIFGGAICEGGGGR
Sbjct:    1 MGMLDGAAASSPRLARAAPSHLLVFHNMPPSCPAVELPSVSKMSSSQATTIPRRRVLTRIPSMGGFSLPSTSFLSSSSPPCGRSSRALGRGLTFLLIGTFLLGFVHFVKAETQETPEVGSRDGNVAFFRTQTLEEGPLAKEAGAPTTRMNKEEGDRGVEEESLSRGFWPAFLNSLSMILVTELGDKTFFIAAVLAMRYDRLLIFGGAICEGGGGR 215          
BLAST of EWM26889.1 vs. NCBI_GenBank
Match: gi|325303602|tpg|DAA34276.1| (TPA_inf: membrane protein [Amblyomma variegatum])

HSP 1 Score: 67.3958 bits (163), Expect = 4.104e-11
Identity = 29/46 (63.04%), Postives = 39/46 (84.78%), Query Frame = 0
Query:  167 FWPAFLNSLSMILVTELGDKTFFIAAVLAMRYDRLLIFGGAICEGG 212
            FW  FL ++S+I+V+ELGD+TFFIAA+LAMR+ RL++FGGAI   G
Sbjct:   59 FWHGFLGAISVIIVSELGDQTFFIAAILAMRHSRLVVFGGAIAALG 104          
BLAST of EWM26889.1 vs. NCBI_GenBank
Match: gi|1036690503|ref|XP_017026218.1| (PREDICTED: uncharacterized protein LOC108077422 isoform X1 [Drosophila kikkawai] >gi|1036690514|ref|XP_017026226.1| PREDICTED: uncharacterized protein LOC108077422 isoform X1 [Drosophila kikkawai])

HSP 1 Score: 70.8626 bits (172), Expect = 9.458e-11
Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 0
Query:  143 GAPTTRMNKEEGDRGVEEESLSRG-FWPAFLNSLSMILVTELGDKTFFIAAVLAMRYDRLLIFGGAIC 209
              PT   N  +  +   E S S+G F  AF  S+S+IL+TELGDKTFFIAA++AMR+ RL++FGGAI 
Sbjct:   69 NKPTDLSNLADKQKEATERSKSKGNFIDAFTASISVILLTELGDKTFFIAAIMAMRHPRLIVFGGAIA 136          
BLAST of EWM26889.1 vs. NCBI_GenBank
Match: gi|545713987|ref|XP_005709296.1| (hypothetical protein Gasu_01380 [Galdieria sulphuraria] >gi|452825781|gb|EME32776.1| hypothetical protein Gasu_01380 [Galdieria sulphuraria])

HSP 1 Score: 70.4774 bits (171), Expect = 9.626e-11
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 0
Query:  130 TQTLEEGPLAKEAGAPTTRMN--KEEGDRGVEEESLSRGFWPAFLNSLSMILVTELGDKTFFIAAVLAMRYDRLLIFGGAIC 209
            T+T   G LA+E     +++    E  DR        R F P+F+ SL MILVTELGDKTFFIAA++AM+  R+L+F GA+C
Sbjct:   65 TRTSVTGDLAEETTKGISKLFPFLERMDR--------RAFLPSFIQSLFMILVTELGDKTFFIAAIMAMKNSRILVFQGALC 138          
BLAST of EWM26889.1 vs. NCBI_GenBank
Match: gi|298707549|emb|CBJ30133.1| (transmembrane protein TPARL, putative [Ectocarpus siliculosus])

HSP 1 Score: 69.707 bits (169), Expect = 1.022e-10
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 0
Query:  143 GAPTTRMNKEEGDRGVEEESLSRGFWPAFLNSLSMILVTELGDKTFFIAAVLAMRYDRLLIFGGAI 208
            G+ +  MN+     G E E    GFW AF NS++MI+ TE+GDKTFFIAA++AM + RL +FGGA+
Sbjct:   25 GSSSGDMNENAVSAG-EGEPPQVGFWTAFANSVAMIIATEIGDKTFFIAAIMAMSHPRLAVFGGAV 89          
BLAST of EWM26889.1 vs. NCBI_GenBank
Match: gi|1036690536|ref|XP_017026245.1| (PREDICTED: uncharacterized protein LOC108077422 isoform X3 [Drosophila kikkawai])

HSP 1 Score: 70.0922 bits (170), Expect = 1.594e-10
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 0
Query:  145 PTTRMNKEEGDRGVEEESLSRG-FWPAFLNSLSMILVTELGDKTFFIAAVLAMRYDRLLIFGGAIC 209
            PT   N  +  +   E S S+G F  AF  S+S+IL+TELGDKTFFIAA++AMR+ RL++FGGAI 
Sbjct:   71 PTDLSNLADKQKEATERSKSKGNFIDAFTASISVILLTELGDKTFFIAAIMAMRHPRLIVFGGAIA 136          
BLAST of EWM26889.1 vs. NCBI_GenBank
Match: gi|242003375|ref|XP_002422716.1| (transmembrane protein TPARL, putative [Pediculus humanus corporis] >gi|212505538|gb|EEB09978.1| transmembrane protein TPARL, putative [Pediculus humanus corporis])

HSP 1 Score: 69.3218 bits (168), Expect = 1.737e-10
Identity = 31/43 (72.09%), Postives = 39/43 (90.70%), Query Frame = 0
Query:  166 GFWPAFLNSLSMILVTELGDKTFFIAAVLAMRYDRLLIFGGAI 208
            GF+PAF+ S S+I+V+ELGDKTFFIAA++AMRY RL +FGGAI
Sbjct:   62 GFFPAFVASFSVIIVSELGDKTFFIAAIMAMRYPRLTVFGGAI 104          
BLAST of EWM26889.1 vs. NCBI_GenBank
Match: gi|321464633|gb|EFX75640.1| (hypothetical protein DAPPUDRAFT_231233 [Daphnia pulex])

HSP 1 Score: 68.9366 bits (167), Expect = 1.948e-10
Identity = 45/115 (39.13%), Postives = 62/115 (53.91%), Query Frame = 0
Query:   94 FLLIGTFLLGFVHFVKAETQETPEVGSRDGNVAFFRTQTLEEGPLAKEAGAPTTRMNKEEGDRGVEEESLSRGFWPAFLNSLSMILVTELGDKTFFIAAVLAMRYDRLLIFGGAI 208
            FLL+       V+ V A+ +  P   S++ N       ++E G  +KE       MN               GF  AFL SLS+I+V+ELGDKTFFIAA++AMR+ RL++F GAI
Sbjct:   12 FLLLSIIFALLVYQVYADKE--PHEDSKEDN-------SIENGKNSKEIKGTEAPMN-------------DLGFAHAFLASLSVIIVSELGDKTFFIAAIMAMRHSRLVVFSGAI 104          
BLAST of EWM26889.1 vs. NCBI_GenBank
Match: gi|1036690525|ref|XP_017026236.1| (PREDICTED: transmembrane protein 165 isoform X2 [Drosophila kikkawai])

HSP 1 Score: 68.9366 bits (167), Expect = 2.373e-10
Identity = 36/69 (52.17%), Postives = 48/69 (69.57%), Query Frame = 0
Query:  141 EAGAPTTRMNKEEGDRGVEEESLSRG-FWPAFLNSLSMILVTELGDKTFFIAAVLAMRYDRLLIFGGAI 208
            +   PT   N  +  +   E S S+G F  AF  S+S+IL+TELGDKTFFIAA++AMR+ RL++FGGAI
Sbjct:   67 DLNKPTDLSNLADKQKEATERSKSKGNFIDAFTASISVILLTELGDKTFFIAAIMAMRHPRLIVFGGAI 135          
BLAST of EWM26889.1 vs. NCBI_GenBank
Match: gi|1189095606|ref|XP_020813355.1| (uncharacterized protein LOC110188119 isoform X1 [Drosophila serrata] >gi|1189095608|ref|XP_020813356.1| uncharacterized protein LOC110188119 isoform X1 [Drosophila serrata])

HSP 1 Score: 69.707 bits (169), Expect = 2.374e-10
Identity = 36/70 (51.43%), Postives = 48/70 (68.57%), Query Frame = 0
Query:  141 EAGAPTTRMNKEEGDRGVEEESLSRG-FWPAFLNSLSMILVTELGDKTFFIAAVLAMRYDRLLIFGGAIC 209
            +   PT   N  +  +   E S S+G F  AF  S+S+IL+TELGDKTFFIAA++AMR+ RL++FGGAI 
Sbjct:   67 DINKPTDLSNLADKQKESTERSKSKGTFIDAFTASISVILLTELGDKTFFIAAIMAMRHPRLIVFGGAIA 136          
The following BLAST results are available for this feature:
BLAST of EWM26889.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109011|gb|EWM26889.1|3.243e-152100.00transmembrane protein, partial [Nannochloropsis ga... [more]
gi|325303602|tpg|DAA34276.1|4.104e-1163.04TPA_inf: membrane protein [Amblyomma variegatum][more]
gi|1036690503|ref|XP_017026218.1|9.458e-1152.94PREDICTED: uncharacterized protein LOC108077422 is... [more]
gi|545713987|ref|XP_005709296.1|9.626e-1147.56hypothetical protein Gasu_01380 [Galdieria sulphur... [more]
gi|298707549|emb|CBJ30133.1|1.022e-1051.52transmembrane protein TPARL, putative [Ectocarpus ... [more]
gi|1036690536|ref|XP_017026245.1|1.594e-1054.55PREDICTED: uncharacterized protein LOC108077422 is... [more]
gi|242003375|ref|XP_002422716.1|1.737e-1072.09transmembrane protein TPARL, putative [Pediculus h... [more]
gi|321464633|gb|EFX75640.1|1.948e-1039.13hypothetical protein DAPPUDRAFT_231233 [Daphnia pu... [more]
gi|1036690525|ref|XP_017026236.1|2.373e-1052.17PREDICTED: transmembrane protein 165 isoform X2 [D... [more]
gi|1189095606|ref|XP_020813355.1|2.374e-1051.43uncharacterized protein LOC110188119 isoform X1 [D... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3793rna3793Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications