Properties
Property Name | Value |
Product | hypothetical protein |
Orig transcript id | gnl|cribi|Naga_100690g1.447.mrna |
Orig protein id | gnl|cribi|Naga_100690g1.447 |
Gbkey | mRNA |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
CM002462.1 | supercontig | CM002462.1:66232..68258 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3792 ID=rna3792|Name=rna3792|organism=Nannochloropsis gaditana|type=mRNA|length=1814bp TCATGCAGCTCTTCGGGCTGCTCAATTCCCTCCTTCGCCACCACCCGGCC ACCAGCCGCAACAACCTGCACATTACTCGCTACAACGTCATGCCCCTCTC TGCGAACAGCGGCATCATCGGCTGGGTCAAAAACTGCGACACGATTCATC AACTGGTTAAGGATTACAGGGAGTCACGCCACGTGCGTCTCGACATCGAA CGTCGTCTCCTCGCACAAACAGCCCCTGACTATGATAAACTTCCCTTACT TCAAAAAGTGGAGGTGTTTAGGGAGGTGATGCTACAGACTCGAGGGATGG AGGTAGCCAAGATGCTGTGGCTCAAATCCAGCAATTCTGAAATCTGGCTG GAGCGACGCAACAATTTTACCCGATCGCTGGCCGTTATGTCTATGGCCGG CTATATCCTCGGCCTGGGAGACAGGCACCCCTCCAACCTGATGGTCGACC GAACCACCGGGCGCGTCGTGCACATCGACTTTGGCGATTGCTTTGAGGTG TCGATAACCCGGTCTGCCTACCCGGAAACCGTCCCCTTCCGTCTCACCAG GATGCTCATCAACGCCATGGAGGGTGGGGGCATCGAAGGGAGCTTCCGTC TCACATGCGAGAACGTGCTCGAAGTCCTGAGGAACAACCGCGAATCCCTC ATGGCCATGCTCGAAGCCTTTGTCCACGACCCCCTCATCACCTGGCGCCT CCTCCCGACCGAGGCCGTGGATGCCCCCTCCGTCCCCGCCTCCGACCCCG CCTTGCCCCCGTCCATCGAGGAGGAAGCGCAAGCACAGGAAAGAGAAGAA AAGCAGGGCCTCCCCACCAGGGCTTCTCGCGTGCATCTTCCTGCCCTCGG CACCTCCCTGGCCGTGATCCACGAAGAAGGGGAAATGGAACAGGCCTCAA CCTGTCACAGCCCCGTCCAGCCCTGCACTACCCCGTCGTCCGTCGCCAAA GCCTCCCGAAAGAGGACGTTGTCCAGCAAAAGCCACCAGCATCGACGGCA AAACAGTCGGAACGTTCTGATGATCGTCCAGCTCTTTTCCGGGGAGACAG AGAGCACAGGGGAGATGAATGGGGGGAGTATGGGCCACGGCAGTCCCGCA GGCGGGCATCCGCATTCTTCCACCGGCCTGAGCAGTGCGGCCGGGACAAT CGCCTCCCTCCATGCATCCGGACGACACCAGGCTTCCCCTTCTCCCCTTT GTTTCCACAAGGAAGCAGGAATCTTGAGCGCGCCAGCCTCCTCTTCGGAC GCCGCGTTCTCACCCACGGACGGGCAAACGCCCACAGAGGAGATTGAGCT CAATCAGCGGGCACTGGCCATCATGGAACGTATTCAGCAGAAGCTCCTGG GGAGGGACTATCCGTCACTTTCTTACTTGCATTTATCTGGGAACGGGCTG GAGTCTATGCCTCCGGAGACCCGCGGCGGAGGGGAGGGACTGGGGAAGGA GGAGGATCTGGCGTCGTCGGCCTCTCTGTCCTCCTCTATGGTGGGTGTGG CCCGGGTGCACTTGTCGGTCGAGGAGCAAGTGGACCGACTGATCAAGGAG GCGACCTCCGTGGAGAATCTCTGTCGCTTGTTCATGGGCTGGTGCCCTTT TTGGTAGTTCAATGGGGGGATATACTATGTTTATGTATATATATTCAGGA CGGCAAGCGGTCACATTGGGGAAGAATGTCATTGGACATGTACAGTGATA GTTTGCAGTATCATGCGAAGCGAAAAGTAAGCCGTTGGTATATGCTGTAA AAGATGAGGACTACTGTGCATCGGTTATAAAACCAAATTACATTTCTAAC AAGCTGCTTTTTTT back to topprotein sequence of rna3792 >rna3792-protein ID=rna3792-protein|Name=rna3792|organism=Nannochloropsis gaditana|type=polypeptide|length=301bp MKIPELQLLGDVLAFLKSKGFVKTAATLIKEGKGKGALSLSTGSRDLLDL YVKAVGVVPRPETPSSSSDDDSDSSSSSESEEKGEARKRDVKGPITPALK KRQAAAALTTPAAASSSSSSSSSSSSSSSSSSESENEEDRKSHKELSEKQ NTPSQMNGTAKGASSSSSSSSEEEEEEEAETTIPTKKLSNTAHSTRLRPA SKPLPSKTEASSSSSSSSSSSGESSSESESASEEEEKAAAPATKKSLPSH KRKAADMSSSSSSDSSSNEEEEEEGKEEEEERKRKNSPPAKGGKWRVLRR I back to topmRNA from alignment at CM002462.1:66232..68258+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3792 ID=rna3792|Name=rna3792|organism=Nannochloropsis gaditana|type=mRNA|length=2027bp|location=Sequence derived from alignment at CM002462.1:66232..68258+ (Nannochloropsis gaditana) GCACAACCCAGGATGATTCGACGCGTACCATGTTACACTGAATAGCATAA
AATAGATTGTGTGGTCGCGTTGGCATGGATTTCATGGGTGTTTTTACTCG
TTGCCGCCCTTCTAGGACACGCTTTCAGTCGCATTGGGCAAGCAGTATCT
TGTGACCAACGAAGGACTAAGAGCATGAAAATACCGGAGTTGCAGCTGCT
GGGTGACGTCCTGGCTTTTTTGAAGGTACGTGAAAGCCTTCAGGAACGAG
CACACGTGTGAAAACCAGGCCTGCACACGATGTGGGCGACGATTCAAAGG
GTGGATGCCGCTAGTTTCCTCTCAcggccccctctttcctccccatgaTA
TACCcaactcccccccccgcctcagTCCAAGGGGTTTGTAAAGACGGCCG
CTACTTtgatcaaggaggggaagggaaaaggggcgtTGTCGTTGTCGACA
GGGTCGCGTGATTTACTGGACCTGTACGTGAAGGCCGTGGGGGTTGTCCC
GCGGCCGGAAACgccatcgtcgtcgtcggaCGATGATAgtgacagcagca
gcagcagtgaaagtgaggagaagggtgaAGCTAGGAAAAGGGACGTAAAA
GGGCCTATCACGCCGGCCCTGAAGAAGAGACAGGCTGCCGCGGCGTTGAC
GACTCcagctgccgcctcctcctcgtcctcctcctcttcgtcctcctcct
cctcctcgtcttcgtcctccgaaAGTGAAAACGAAGAGGACCGAAAGAGC
CATAAAGAGCTGTCTGAGAAGCAAAACACTCCATCCCAGATGAACGGCAC
CGCGAAGggcgcctcttcttcctcgtcttcctcaagcgaggaggaggaag
aagaggaagctgagACAACCATTCCGACGAAGAAGCTTTCAAACACCGCG
CACTCTACCCGTCTTCGCCCCGCTTCTaaacctcttccttccaaaactga
ggcctcctcctcctcctcctcctcctcctcctcttcaggaGAGTCGTCGA
GCGAGAGTGAGAgtgcgagcgaggaggaggagaaggcagctGCTCCAGCA
ACCAAGAAATCATTGCCCTCCCACAAGCGAAAAGCGGCGGacatgtcttc
ctcctcctcctctgactCCTCCAgtaacgaggaggaggaggaggagggga
aggaagaggaggaggaaaggaagagaaagaattccccccccgcaaaagga
ggaaagtggagggtACTGAGACGCATTTAAATGGAAAGCACCCGAAAAGC
AGCGACAGCGACAACAGTAGCGACAGCAACAGTGACAGTGAGAGCAGCGA
CGACAgtgacagcagcagcgaaaGGTCAGCAAcattttctcccccccgtc
ttgcctctttctttccctccttccctccctccctctttcatcccttcccc
tcctcccactcccttcccttcagcgagagcgaggacgaggacgcggtcgC
TGCCCGGAAGGAAGCGGCAGAAACGGAGAGACGGCGCAAGTCGGTGGagg
ccgccctcgcctgGCAAACcgcgcaggaggaaaaaatgaaggcggggacg
ggcgcAAGTCCAAGCACCTTAACACCcaaaaagggcgggaaagaagggcg
ccGGGTATCCGGGGAGGCGTTTCGGCGCGTGGACGACGAGTACTGGGGGC
AGCAGATCAAGGACGATCGACTCAAGGACAATTCATGtgagggcaggcgg
gagggagggagggagggaggaaggtagggagggaaggaggagagcttgTA
CTTGAAGGCATGGGACTGATGCGTCGTCCTTTTCTGTCTATAtcctgtcg
ccctccctcgttctcctctccttgcctcccgcaGACGCCGGGACCTTCGG
GAGCGGCGGGTACGGGGCCAAGGCAAGCGAGAAGCTGATGACGGTCCGAG
GGAAGGATTTCCGGCacgagaagacgaagaagaagcgggggagcTACAGG
GGGGGGACGATTTCCTTGGAGAGTCACTCGATCAAGTACGACTACGGCTC
GGACGtgtagaagggagggacggaggg back to topCoding sequence (CDS) from alignment at CM002462.1:66232..68258+ >rna3792 ID=rna3792|Name=rna3792|organism=Nannochloropsis gaditana|type=CDS|length=1812bp|location=Sequence derived from alignment at CM002462.1:66232..68258+ (Nannochloropsis gaditana) ATGAAAATACCGGAGTTGCAGCTGCTGGGTGACGTCCTGGCTTTTTTGAA GTCCAAGGGGTTTGTAAAGACGGCCGCTACTTtgatcaaggaggggaagg gaaaaggggcgtTGTCGTTGTCGACAGGGTCGCGTGATTTACTGGACCTG TACGTGAAGGCCGTGGGGGTTGTCCCGCGGCCGGAAACgccatcgtcgtc gtcggaCGATGATAgtgacagcagcagcagcagtgaaagtgaggagaagg gtgaAGCTAGGAAAAGGGACGTAAAAGGGCCTATCACGCCGGCCCTGAAG AAGAGACAGGCTGCCGCGGCGTTGACGACTCcagctgccgcctcctcctc gtcctcctcctcttcgtcctcctcctcctcctcgtcttcgtcctccgaaA GTGAAAACGAAGAGGACCGAAAGAGCCATAAAGAGCTGTCTGAGAAGCAA AACACTCCATCCCAGATGAACGGCACCGCGAAGggcgcctcttcttcctc gtcttcctcaagcgaggaggaggaagaagaggaagctgagACAACCATTC CGACGAAGAAGCTTTCAAACACCGCGCACTCTACCCGTCTTCGCCCCGCT TCTaaacctcttccttccaaaactgaggcctcctcctcctcctcctcctc ctcctcctcttcaggaGAGTCGTCGAGCGAGAGTGAGAgtgcgagcgagg aggaggagaaggcagctGCTCCAGCAACCAAGAAATCATTGCCCTCCCAC AAGCGAAAAGCGGCGGacatgtcttcctcctcctcctctgactCCTCCAg taacgaggaggaggaggaggaggggaaggaagaggaggaggaaaggaaga gaaagaattccccccccgcaaaaggaggaaagtggagggtACTGAGACGC ATTTAAATGAAAATACCGGAGTTGCAGCTGCTGGGTGACGTCCTGGCTTT TTTGAAGTCCAAGGGGTTTGTAAAGACGGCCGCTACTTtgatcaaggagg ggaagggaaaaggggcgtTGTCGTTGTCGACAGGGTCGCGTGATTTACTG GACCTGTACGTGAAGGCCGTGGGGGTTGTCCCGCGGCCGGAAACgccatc gtcgtcgtcggaCGATGATAgtgacagcagcagcagcagtgaaagtgagg agaagggtgaAGCTAGGAAAAGGGACGTAAAAGGGCCTATCACGCCGGCC CTGAAGAAGAGACAGGCTGCCGCGGCGTTGACGACTCcagctgccgcctc ctcctcgtcctcctcctcttcgtcctcctcctcctcctcgtcttcgtcct ccgaaAGTGAAAACGAAGAGGACCGAAAGAGCCATAAAGAGCTGTCTGAG AAGCAAAACACTCCATCCCAGATGAACGGCACCGCGAAGggcgcctcttc ttcctcgtcttcctcaagcgaggaggaggaagaagaggaagctgagACAA CCATTCCGACGAAGAAGCTTTCAAACACCGCGCACTCTACCCGTCTTCGC CCCGCTTCTaaacctcttccttccaaaactgaggcctcctcctcctcctc ctcctcctcctcctcttcaggaGAGTCGTCGAGCGAGAGTGAGAgtgcga gcgaggaggaggagaaggcagctGCTCCAGCAACCAAGAAATCATTGCCC TCCCACAAGCGAAAAGCGGCGGacatgtcttcctcctcctcctctgactC CTCCAgtaacgaggaggaggaggaggaggggaaggaagaggaggaggaaa ggaagagaaagaattccccccccgcaaaaggaggaaagtggagggtACTG AGACGCATTTAA back to top
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