rna3790, rna3790 (mRNA) Nannochloropsis gaditana

Overview
Namerna3790
Unique Namerna3790
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1443
Alignment locationCM002462.1:58164..59232 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100872g1.5029.mrna
Orig protein idgnl|cribi|Naga_100872g1.5029
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:58164..59232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100872g1gene3648Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3790rna3790-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26892.1cds3781Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3790 ID=rna3790|Name=rna3790|organism=Nannochloropsis gaditana|type=mRNA|length=1443bp
ATGGCCGTTGAAGCGGAAAACGTTTCTATAACCTTTACTTATACCTCTAT
ACCACACACTTTAAGCGCTCGCTTAGCTGCAGTAGATCAAACCAATATGT
ATCAAAGTACTTCGTACGCAACGCCTGTTGGAGTGTCGCATCCTGAAGGT
CAAGACGGAGGATCTCGTTATGCTACGCCAGCATCTTCCCATACGAGTTT
CCAAGGCCCCATCACCAAAGCTGCTGCTTCTTACGATATGCCTATAGCAC
ACGCTGTTGCGGCTTCGTCCCCTCCCTTTTCGATTCAACAAATTCCTCTT
GATGATTTCGCTTTGAGGAAAGTTGCATTTACAAAAAGTGGCATCTCTCT
TTGGCTCCCTAAAACTGACTTTTATCCCGGGGATACCGTAATTGGAAAGA
TGAAGGCCAAACTCACCTCAAAGAAGACAATCAGGGCAGTCAAGGCGAAG
TTGAACAGCGAAGCTGTGGCGAGTTGGACCGAATCGAGTGGTGAGCATTC
AAGCACGTATTACGCCGCTCTAGAGCTCGCACCCACGGTCGAGCTAGTCT
TGCAGGAAGGTACCCCTTCGGGAAGCACCTTCGTCTTGGAGCGTCGTCGA
GAGTATGAATGGGTGGTGCAATTCGTGCTTCCTCCTTCTTTGCCTTCGTC
TTTTCGCTTTAAGAAAGGCACTCACATACACAAAAGTGATACCCACATCG
CGCATATGCTGACATTGTCGTTGGATATTCCATATTGGCCGGATTGTAAG
CTCGAATATTTTTTAAGGGTGCACTGCACGCCTGAAGCTATCACTCCGGC
TATGCAACGCCCTGTTGAGCTCCGCGAATCTCGCCCCATCAGTTCTTGCT
GTTGTTTTTTCAGAAAGGGGGAGGCTAATCTCCAGCTTGCTGTACCTATC
ACTGTCCTACCTTTCTCGGATGGAAGCTCTGTCACCCCTACTGATTTTCC
CATTTCTGTCGGCGTGGAAAACGTGAGCAAACGGACGCTTACGGATGTGC
GCTTGGCTCTGGTGGGAGAGATCGTTCTGACGGGCAGCCGAGCCTTCTCC
ACCCATGAGGCCACTCGATCCTATCCATTCACGGTCGCCGAGCATTTGGT
GGCCTCTAAAGTCCTCCCAGGCACCAGCCTCGCCCTCCACGCCGTCACAA
CCTTCCCCACCTTGCTCTTGCAGTGGAATCCCGATTTCGACATCGCTTTC
TGCCGTTCCAGAAAGCCCAAGAAACTAAACATCGTACAAATGCCCTCATT
TGTCGCAGGGAACGTCTTTCAGATCAAATATCATTTGGAACTCACCGCCA
AAAGTGCCTGCAGCCATGTTCCGGACCTTTCTGTGCCCATTACTTTTGTT
CCTTCGCATCCGCCCTCCCATTCGTCTGGTGTCTCTCTATCGTTGGCAAC
GCAGCCTTTCCTAATACAACATGAGCGCCAGAGATGGCTGTAA
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protein sequence of rna3790

>rna3790-protein ID=rna3790-protein|Name=rna3790|organism=Nannochloropsis gaditana|type=polypeptide|length=75bp
MLDNLQLFEAKVGKLRCLEALGDYPSLLVEATRLKNTLLAAGSKPVTEEG
QPREWAGWTFQPGSALPPFAVDRDT
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mRNA from alignment at CM002462.1:58164..59232+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3790 ID=rna3790|Name=rna3790|organism=Nannochloropsis gaditana|type=mRNA|length=1069bp|location=Sequence derived from alignment at CM002462.1:58164..59232+ (Nannochloropsis gaditana)
ATGCTCGACAATTTGCAGCTCTTCGAAGCCAAGGTAGGGAGCAGGGTCGG
TGCGggtctctctctctctgttGCGTGCGGCTGGGTGTGTGGAAAGGGCC
CTCGTCGAGcccggggaaggggggggggggcctgCCGGATAGACCATGTG
GCACGCATCTGAATGTCCCGGAAATAATATAGGAAGTGCTGTCAGCCGCA
CACTATTTTTCTGAAACAGGAGCGTGTGCACATTCCACCTTTTATATCAT
GCCCCACCTCCCCGACCGattcgacccctccctccctttcttcccctctc
cctccctccctcctttcttcccaggTGGGTAAACTCCGATGCCTGGAAGC
CTTGGGCGACTACCCCAGCCTACTGGTGGAAGCCACACGTCTCAAGAATA
CCCTCCTTGCCGCCGGTTCCAAGCCCGTGACCGAGGAGGGTCAACCGCGA
GAATGGGCCGGATGGGTAGCTCAGACGCTCCTTCTGGGGACGAAGGCAGC
GTTTAACTTGGGGCAATGGGAAGACATgcgcgccttcctccacacccACG
AGCGTCACCTCTCAGAGACTCCGTGtacttccctttcctcccccagccct
tccaccctttcctccctcccgtccttctccgACGAGGATCCTCTCTATta
cttcgccctcctccacgtgaCCACCGAGTCGCCCCCGTTCCCCTTAGCCA
CGGCCGCCATTTCCGCATTGCGAGCCAAGCTTTCCATGAACCTGTCCTCT
GTCCTCACAGAGTCCTATACGCGGGCCTACCGGGGTCTGGTCACTGCCCA
GCAGCTCgtggagttggaggaggtgatggcgtTCAAACaagccgccacct
ccccccttgcccggcCAAGCACCCACGCCGgcgcctccaccccttcttcc
ctcctcccgctcctccgcgcAAAGTGGGATGCGCGTCTTGACCAGGCGGC
CTCGGACGTGAAAGTCCTCCGGcggcttctctccctgcggcccctcctct
tccctccccatcaagACCTTCCAGCCTGGCTCCGCCTTGCCTCCATTTGC
CGTCGACAGGGACACCTGA
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Coding sequence (CDS) from alignment at CM002462.1:58164..59232+

>rna3790 ID=rna3790|Name=rna3790|organism=Nannochloropsis gaditana|type=CDS|length=684bp|location=Sequence derived from alignment at CM002462.1:58164..59232+ (Nannochloropsis gaditana)
ATGCTCGACAATTTGCAGCTCTTCGAAGCCAAGgTGGGTAAACTCCGATG
CCTGGAAGCCTTGGGCGACTACCCCAGCCTACTGGTGGAAGCCACACGTC
TCAAGAATACCCTCCTTGCCGCCGGTTCCAAGCCCGTGACCGAGGAGGGT
CAACCGCGAGAATGGGCCGGATGGACCTTCCAGCCTGGCTCCGCCTTGCC
TCCATTTGCCGTCGACAGGGACACCTGAATGCTCGACAATTTGCAGCTCT
TCGAAGCCAAGgTGGGTAAACTCCGATGCCTGGAAGCCTTGGGCGACTAC
CCCAGCCTACTGGTGGAAGCCACACGTCTCAAGAATACCCTCCTTGCCGC
CGGTTCCAAGCCCGTGACCGAGGAGGGTCAACCGCGAGAATGGGCCGGAT
GGACCTTCCAGCCTGGCTCCGCCTTGCCTCCATTTGCCGTCGACAGGGAC
ACCTGAATGCTCGACAATTTGCAGCTCTTCGAAGCCAAGgTGGGTAAACT
CCGATGCCTGGAAGCCTTGGGCGACTACCCCAGCCTACTGGTGGAAGCCA
CACGTCTCAAGAATACCCTCCTTGCCGCCGGTTCCAAGCCCGTGACCGAG
GAGGGTCAACCGCGAGAATGGGCCGGATGGACCTTCCAGCCTGGCTCCGC
CTTGCCTCCATTTGCCGTCGACAGGGACACCTGA
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Synonyms
Publications