rna3788, rna3788 (mRNA) Nannochloropsis gaditana

Overview
Namerna3788
Unique Namerna3788
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length588
Alignment locationCM002462.1:44681..46536 +

Link to JBrowse

Properties
Property NameValue
Productfucose mutarotase-like protein
Orig transcript idgnl|cribi|Naga_100103g2.7035.mrna
Orig protein idgnl|cribi|Naga_100103g2.7035
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:44681..46536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100103g2gene3646Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3788rna3788-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26898.1cds3779Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3788 ID=rna3788|Name=rna3788|organism=Nannochloropsis gaditana|type=mRNA|length=588bp
ATATTCTTACAACTTCAGTATGACACCTGTCACTTCAAACGCAGATAAAT
TCATCGAGTTGCAGCTCACTTACTTACCCAGAAAAGACGATTTTTATCGA
CTTACAACCAGACTGCTGATCTTGGGTACACTCAAAAGATGGATGATACC
AAAATGGACATAAATATCGGGCTGCACGAGGATCTGCTCTCCCAGTACGA
CATTTTGAGCAGAGAGCTCTCGCCGCGCCTCCGACGGGGATTGAATGATG
TTTATGAGGGGCTCGAGTGGATGATTACGCTAGGCGCTTTAGGTGTAGGC
TTCTATTCAGCTTCTCGCCTCCTCTATGCTACGTACTGGGTGTTGGACTG
TCGTTCTAGGAAGTCGACGCGCTGGCGGAAGCAAGTACTTGCTCTGAGCT
TCGGCTCAGTCATGCGGCTTACAATAGAGATTTGGACCGCGATAGTACCT
GAAAGAGACACAAATCAGAGACTGAATACATTTTTATCAGTTTTTTGCTA
CGAATTCTCTGTCAGGGCTCTTATAGTCTCATTACACGTAACAAAAATCT
TTTCGCTTTGCGTGACATGTAGATCGAAGCAGACTTGA
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protein sequence of rna3788

>rna3788-protein ID=rna3788-protein|Name=rna3788|organism=Nannochloropsis gaditana|type=polypeptide|length=154bp
MTVLKRIPKVLSPRLLHVLASMGHGDEIVLADANFPAASIASHTPGGLVN
SDGNDIPTLLTAIMQLLPLDETAPPAMVMEMMPVHQALGWKTQIWDTYKE
IVSEGEGRNVALTTVERFEFYSRSKQAYAVIATGETALYGNLILKKGVIG
STGE
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mRNA from alignment at CM002462.1:44681..46536+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3788 ID=rna3788|Name=rna3788|organism=Nannochloropsis gaditana|type=mRNA|length=1856bp|location=Sequence derived from alignment at CM002462.1:44681..46536+ (Nannochloropsis gaditana)
CAagcggtggggaggttaattTTCAGGCTTGGGTATTTTCAGGTTCCCTC
TTACGACTCGTCACTTTGATGAGGAACTTTTGAATAGAAAGACACTTTCA
TCAATGATCACAACAGTGCCCTTGATACCAACCGCGTTAACACGTGTGCA
CTTGGGAGTTTTGTTCTGTTGCTGCCTTCTGCTCTTGTCTAACCATGCTG
AAAAGAATTCCTACCTTTACATGGTGCAAAGCCTGCCCATTGTGCCATCG
CGCTGATTTTGACAGTCACCAAGGATGAAATCCTGATCTTTCTTTGCACA
TCTCATCACGCGGCGTAGATTGGCGTGAAATTGCGTCTCGCTTGTCAACG
GGAAACGCTACGGTTTGAGAGCTAACTACATCGAACTTTCATTCGGTCGC
CTAAATATATGTTTCACTGCAGGAGATCTCTATGCTTTTTTCCATACTCA
CTGTCTATGAAACACACAGCTGAGTGCACTTCGGGGGACTCAAAAGATGA
CCGTACTCAAGCGCATACCCAAGGTCTTAAGCCCCCGTCTGCTACACGTG
CTGGCAAGCATGGGTCACGGTGATGAAATCGTCCTTGCAGGTGCGTCCGG
ACCGATAGAGAATTCTGATGTCGTGTGAACAAAAGATTGCttgacaagga
agaagaatgCGGGATCCAAAAGCAACTATCTTAGACATTGATGTTttcct
ttttaaaaaaaataaatCTGCTTATTTTGCTGTATGAATCTTGCTTGCAT
AATTTCTTGCGACTTACGCACGGTCTGCGTATATCATAAGGTTTTTATTT
TATTCAATCATTCTCTGTAATACTGCAGATGCCAACTTCCCTGCAGCCTC
GATTGCTTCTCATACACCCGGTGGACTCGTCAATTCAGATGGTGCGGTGT
CGAGTGATTGAGTTTCACGATATCGACAACTCTTGTACATTCAGGTTCAT
TTCCACCACTTCTTTTACATATTGGCTCCCACATTTCCCAAAGGAAATGA
CATTCCTACGTTACTGACGGCAATCATGCAGCTGTTGCCCTTGGATGAGA
CCGCACCGCCTGCTATGGTCATGGAGATGGTGAGTGTATCGATGTCCCCC
CGTTCCTGTATCCCGCGAGGACACGATCAACCTATAGTCGAGTGGCAACA
TTATTTAGCTCAAGTCATATGAGTGAGGTTTTGTTATCTTTTTTTAGGTA
TAAACTTGCTTTGTCACGTGAGCATAGTCAAAGCTCGCATTGATTTGACA
TGACTTGAGGCATTCATTATCAAATTCTCACAAAAAGCACTGACTAAACA
GATGCCTGTCCATCAAGCCCTTGGGTGGAAAACTCAAATATGGGACACGT
ACAAGGAAATCGTcagcgaaggggaaggacgcaaCGTTGCGTTGACAACG
GTAGAGAGATTTGAATTCTACTCCAGGAGCAAGCAAGCCTATGCCGTCAT
CGCGACTGGGTGAGCGACGCATGGCGAGAGGCTATGAGCTCAATTCACTG
CTCGTTCTTTCCTGCATGTGCTCATCCATACGTTCAATCCCTGTGCTTGC
TCTACGATACAGGGAAACAGCGCTTTACGGCAACCTGATTCTCAAGAAGG
GTGTCATTGGTAGCACCGGCGAATGATACTGGATCGTGCTCTCAAGAAGG
GTGTCATTGGTAGCACCGGCGAATGATACTGGATCGTGCTCTCAAGAAGG
GTGTCATTGGTAGCACCGGCGAATGATACTGGATCGCGCTTTGCGTCTCG
GACCTGCTTTGGACTTGCCCTCTTTAAAAAAGATGTCTGACATGAGTAAA
GAAGCTAAGGAGGACTGAGAATGACATAACTGGAAACAAAAAATGCGGGA
AAGTCG
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Coding sequence (CDS) from alignment at CM002462.1:44681..46536+

>rna3788 ID=rna3788|Name=rna3788|organism=Nannochloropsis gaditana|type=CDS|length=2325bp|location=Sequence derived from alignment at CM002462.1:44681..46536+ (Nannochloropsis gaditana)
ATGACCGTACTCAAGCGCATACCCAAGGTCTTAAGCCCCCGTCTGCTACA
CGTGCTGGCAAGCATGGGTCACGGTGATGAAATCGTCCTTGCAGATGCCA
ACTTCCCTGCAGCCTCGATTGCTTCTCATACACCCGGTGGACTCGTCAAT
TCAGATGGAAATGACATTCCTACGTTACTGACGGCAATCATGCAGCTGTT
GCCCTTGGATGAGACCGCACCGCCTGCTATGGTCATGGAGATGATGCCTG
TCCATCAAGCCCTTGGGTGGAAAACTCAAATATGGGACACGTACAAGGAA
ATCGTcagcgaaggggaaggacgcaaCGTTGCGTTGACAACGGTAGAGAG
ATTTGAATTCTACTCCAGGAGCAAGCAAGCCTATGCCGTCATCGCGACTG
GGGAAACAGCGCTTTACGGCAACCTGATTCTCAAGAAGGGTGTCATTGGT
AGCACCGGCGAATGAATGACCGTACTCAAGCGCATACCCAAGGTCTTAAG
CCCCCGTCTGCTACACGTGCTGGCAAGCATGGGTCACGGTGATGAAATCG
TCCTTGCAGATGCCAACTTCCCTGCAGCCTCGATTGCTTCTCATACACCC
GGTGGACTCGTCAATTCAGATGGAAATGACATTCCTACGTTACTGACGGC
AATCATGCAGCTGTTGCCCTTGGATGAGACCGCACCGCCTGCTATGGTCA
TGGAGATGATGCCTGTCCATCAAGCCCTTGGGTGGAAAACTCAAATATGG
GACACGTACAAGGAAATCGTcagcgaaggggaaggacgcaaCGTTGCGTT
GACAACGGTAGAGAGATTTGAATTCTACTCCAGGAGCAAGCAAGCCTATG
CCGTCATCGCGACTGGGGAAACAGCGCTTTACGGCAACCTGATTCTCAAG
AAGGGTGTCATTGGTAGCACCGGCGAATGAATGACCGTACTCAAGCGCAT
ACCCAAGGTCTTAAGCCCCCGTCTGCTACACGTGCTGGCAAGCATGGGTC
ACGGTGATGAAATCGTCCTTGCAGATGCCAACTTCCCTGCAGCCTCGATT
GCTTCTCATACACCCGGTGGACTCGTCAATTCAGATGGAAATGACATTCC
TACGTTACTGACGGCAATCATGCAGCTGTTGCCCTTGGATGAGACCGCAC
CGCCTGCTATGGTCATGGAGATGATGCCTGTCCATCAAGCCCTTGGGTGG
AAAACTCAAATATGGGACACGTACAAGGAAATCGTcagcgaaggggaagg
acgcaaCGTTGCGTTGACAACGGTAGAGAGATTTGAATTCTACTCCAGGA
GCAAGCAAGCCTATGCCGTCATCGCGACTGGGGAAACAGCGCTTTACGGC
AACCTGATTCTCAAGAAGGGTGTCATTGGTAGCACCGGCGAATGAATGAC
CGTACTCAAGCGCATACCCAAGGTCTTAAGCCCCCGTCTGCTACACGTGC
TGGCAAGCATGGGTCACGGTGATGAAATCGTCCTTGCAGATGCCAACTTC
CCTGCAGCCTCGATTGCTTCTCATACACCCGGTGGACTCGTCAATTCAGA
TGGAAATGACATTCCTACGTTACTGACGGCAATCATGCAGCTGTTGCCCT
TGGATGAGACCGCACCGCCTGCTATGGTCATGGAGATGATGCCTGTCCAT
CAAGCCCTTGGGTGGAAAACTCAAATATGGGACACGTACAAGGAAATCGT
cagcgaaggggaaggacgcaaCGTTGCGTTGACAACGGTAGAGAGATTTG
AATTCTACTCCAGGAGCAAGCAAGCCTATGCCGTCATCGCGACTGGGGAA
ACAGCGCTTTACGGCAACCTGATTCTCAAGAAGGGTGTCATTGGTAGCAC
CGGCGAATGAATGACCGTACTCAAGCGCATACCCAAGGTCTTAAGCCCCC
GTCTGCTACACGTGCTGGCAAGCATGGGTCACGGTGATGAAATCGTCCTT
GCAGATGCCAACTTCCCTGCAGCCTCGATTGCTTCTCATACACCCGGTGG
ACTCGTCAATTCAGATGGAAATGACATTCCTACGTTACTGACGGCAATCA
TGCAGCTGTTGCCCTTGGATGAGACCGCACCGCCTGCTATGGTCATGGAG
ATGATGCCTGTCCATCAAGCCCTTGGGTGGAAAACTCAAATATGGGACAC
GTACAAGGAAATCGTcagcgaaggggaaggacgcaaCGTTGCGTTGACAA
CGGTAGAGAGATTTGAATTCTACTCCAGGAGCAAGCAAGCCTATGCCGTC
ATCGCGACTGGGGAAACAGCGCTTTACGGCAACCTGATTCTCAAGAAGGG
TGTCATTGGTAGCACCGGCGAATGA
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Synonyms
Publications