rna3780, rna3780 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3780
Unique Name	rna3780
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2021
Alignment location	CM002462.1:28387..30629 +

Link to JBrowse

Properties


Property Name	Value
Product	ribosomal protein s20
Orig transcript id	gnl\|cribi\|Naga_100103g9.7044.mrna
Orig protein id	gnl\|cribi\|Naga_100103g9.7044
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002462.1	supercontig	CM002462.1:28387..30629 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100103g9	gene3639	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3780	rna3780-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26907.1	cds3771	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002462.1:28387..30629+
coding sequence from alignment at CM002462.1:28387..30629+

mRNA sequence

>rna3780 ID=rna3780|Name=rna3780|organism=Nannochloropsis gaditana|type=mRNA|length=2021bp
ATGGACATCCGGGGCTCGACCAGGCGCCTCTTCCCGGACCAGGACCTTCC
CCTAATACGCCTGCAGGATACGACTACCATTTCCCTTCTTTTCCTTCGGG
CCTCCTTTTCCCTGCCCACGGCGCCGCACCCGTACCCCCCGCTGTCGACG
GAGGGAGGGAGGGAGGAAGGCGGGCAGCTCTCGGACGTGCCGTTGGAACA
AGAAGGAGGCACGCTCTCGTACATGTGGGAGCATATGTCCTTAGATGAAA
GCGGTCAGCCAGGCCCTTCCCCCTACACAGGGTACGAGCATGGCATCTAC
CCTCCCACCTTCCCTCCCTCCCTCCCTCCCGCGGGTCCGCCCCCCCCTGC
TAGCTACTTGTACTACTACGACTCGCCCTCGCCAGGGGCGTACGGGGGGA
TGCCAATGATGTACGGTCTTGACACCTTCTCCCCGTATCAGGACGGCTAC
TACTACCTCCCTCCCTCCCTCCTTCCCTCCCTCCCGCCCTCGACGCTCTC
TCCTTCCTACCCTCCCTCCAGCTTTCCCGCCTACACCCCTGCCGCTGCCT
CTTCGCTACCTGCCTCTCCTTCGCCAGCCGGTGACCGTGGCTATAAAGGA
CCCTACCCAAGTCGACGAGCAGAGGGGAGAGAGAGGGAAGGCGGAGGACG
GCGCGGAGGGCGGGGACGAGGCGCAGCTGCGATGGGGAAAGAGTCCATCC
CAGCGACGGCAGGCAAGGAGGCAGAGGAGGAGGTGATGGAGGCGAGGATT
GAAACAGGCGTCGTTCAGATCAGCCAAAATGATTCAAAGGAGGAAGAGCC
GCAAGGGGGAGTAGGCTTCGAGGGGAAGGATGGGGAGGAAGACGAAGAGA
AAGAGGAGAACCGGGAGCAGGAGCAAGAGGGGCCGCAGGACGAGGAGCCC
GAGAAGGAGGAGGAGGCCTGGAAAACGCCGCCGCAGGTGTTGCCAACGGG
GGATCCGGTGCAGGCTCGATTTTTCGTCATCAAGTCCTTCTCCCCAACCG
ATGTGGTCCAGTCCGTACACCATTCCCTGTGGGCCTCCACGGAACCCGGA
AATGCTCGCCTAGACCGCGCCTACCGCGAGGCTGCCGTGCAGGGTATCCC
TGTCTACCTCTTCTTTTCAGTCAATGAATCGCGGCGATTCTGTGGGGTAG
CCCTCATGTCTTCGCCCGTGGACTTTAACACTTCCTTTCCCGCGTGGATG
AAGACTCAGACACATCGGTGGCGGGGAGTCTTCAATGTTAGGTGGCTCTT
GGTGAAAGATGTGCCAAATGCTGCTTTGCGGCACATTACCCTGGCCAACA
ATCAGAATAGACCCTTTCCCCGCTCCCGTGATACACAAGAGGTGCCATTC
AATGAGGGCAATGAGGCTTTGCAGATTATGAACGATCACGCCTACTATTC
GTCTATACTCGACGGACAAGACATCCTACCCGCCTCTTTTCAGGATCACT
CTTCGACCATTTCACCCGCAGGCGCTCCTGTCTATGCGTTTGCAGCAGCT
CCTCACGAGGCGCAGTATTCATCCTTTCCCGGCCAATCTTTTCAAGTCAT
ACCACCTCAACCTATTGCCTCCACTTTCCATTCACCTCCCACGCATGGCA
CTTCAAGTGTCAACGGCAACGGATATTTTCCTACAGAGTACCCTAGCTAC
CAGTACGGAAACGGCTTTTCTCCCCGCCACGTGATCGTCACAGGGGAAAA
TCATCAACCCTGGTCAAGTCAGTTTTCAAAACAGCAGGACCGTACCGGCA
GATATGAAGAGAGAGGCGAAGGCAGAGGGTGGGGAATGGGACATCGCGGA
AACGGAGGCACCCACTCAAACGTAGGGGCTCGATCACGGTAGGTGTCGCA
TAAGGAAATGCAACGGGATATTCGAGACGAGAAAGGCGATGCTCAATTCA
GGCTTTTCATTTTATATGAATGAAGACGGAGGTTTTCTCTCTTGAAAAGC
TGAACGACTAGTTTAAAGTTTGGGCAATACAAAACTTTGCCTTTGAAACT
TAGGCCTATGATATTGTCCCT

protein sequence of rna3780

>rna3780-protein ID=rna3780-protein|Name=rna3780|organism=Nannochloropsis gaditana|type=polypeptide|length=120bp
MADIVKPKVLAEEEEQIHRIRITLTSLNVKDLEKVCEALKTRAVNHSKHL
KVAGPVRLPTKKLKITTRKSPNGEGTNTWDRFQMRIHKRIIDLHTSSDAV
KSITNIVIEPGVEVEITINN

mRNA from alignment at CM002462.1:28387..30629+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3780 ID=rna3780|Name=rna3780|organism=Nannochloropsis gaditana|type=mRNA|length=2243bp|location=Sequence derived from alignment at CM002462.1:28387..30629+ (Nannochloropsis gaditana)
tcttcCTCGTTTCCGCCAGGGCCACGCATAATTGCACATGGGACATGCGA
TCAAGGCCACCTAAACGTGCCAATGCATGCCAAAGCCTCTATTACCTGGT
AGAGAGTTGCAATGGATATGGGCGCTGCTCACCCGTCGTGATGTTGTTTT
TTCCCGATGAATAAAAACCAACGGCTGCCACAGGCCCTCGGAACCATACC
ATAATTCTTTCTTCTCATCCTTCTTTTTAAACCCTCTTTGATACACACAC
GCTCTAATTGAATTTCACCGCTACTTATAGCCCCGCCGGATCAGGTGAGG
GACTCATTAGAATGATTGAGGTTTGGGCTTTGGTATAAGTAAAGAAGCCC
GTGTGCTGATGTCTAATCCTCCCACCCTACCTCCACCCATTTTCTGACCA
TCTGCAGGTTACCGCTGGTGCTTTCTCGCTTCAGGTAGGCAAAGTTTCCT
CTGTAGATGGAGCAAgcgtaggagggagggagcattTTGCAAAGCCCAGC
TCGAGGAGGGAACAATTAGGGGGATGATGTATGGGAGTACGGGGTTGGAG
AGCGAATGCTGTTTGTCCAGACGACCTAGGATTAAAAGCATTAGTTCAAG
GCAGATCGTCGCCGGTCTCAGAGGAGCATTCTGCTTCTTGTGCGGACTTC
TAACTACTTCCTGTGTCGATGAGGTCTCTGTCAGCTTCCTAGGGTTGCGG
CGCATGGCTCCATGCCCTGAATATCGTCCGTTGACTTGTTTACTCATGGA
CGCaacctcttttccttccactttCTACAGCGCCTCTTCCAGCAACTTTA
ATTTTCACACCCTACATTCCAAACATGGCCGATATTGTCAAGCCCAAAGT
CCtcgccgaggaggaggagcaggtcaGAACCGGGATGAGAATGGGTGGGC
AAGGTTGCCTTCAAGAGGAATTCTTATGTGTGCATGCATTTGCGTGGTAG
GATGTGTCGGGACGCAAAAAATTTGCGTACGGCAGATTGTGACACGCTGG
TACTCATGTCCGTATGATTATCGCATCGAATTTTCTCTGTCTCCCTTCAT
TGTCATCAGATCCACCGCATCCGCATCACGCTCACCTCGCTGAACGTGAA
GGACCTGGAAAAGGTTTGCGAGGCATTGAAGACTCGAGCTGTGAATCATA
GCAAGCACTTAAAGGTTGCTGGGCCTGTTcggtaggaggggagggagggg
gagggacaggagggaaggagggaagaaagaaagaggctgAAGGAAgttgg
aaagaaggaagcagCGGTTCTCATACTTGAGAGGGGAATCACGCGAAATC
ATAATCGTGAAAGACGTGTGCAATGCGAGGGGGAATCCAACGAGTGGAAG
CTGACGAATTTTCTCGGCACACAGACTCCCGACGAAGAAGCTGAAGATCA
CGACCCGCAAATCTCCCAACGGCGAGGGAACCAACACGTGGGACCGGTTC
CAGGTACGTGCAGGGCGGACGGCGCTAAAGGGGTCGGCCGTAGGGGTGGA
AGTGGGCGAGAGGCGCTGACACTCTTTCATCCGGGGGGCTTACGCTTTCA
ATTGGAgttgtcttctcctttcgtGGCTTTCAAGCAAGGTGCATCGCCCT
GCGTGTTATTCTTATACCTAGTTTTTCCGGTGCTGTCTTGCCACATTATG
CAGATGCGCATCCACAAACGTATTATTGACCTGCACACGTCTTCGGATGC
TGTGAAGAGCATCACGAACATCGTGATTGAGCCCGGGGTCGAAGTCGAAA
TTACCATCAACAACTGAGTTCGATCGATACTTGACGAGGAATTGGGTTCT
TAACGCTGTCTGCAAGCAATCCTCTTTGCTGGGTGgagcgaagaaagggg
gagggacacggATGAGGTCACGTTGCGTTCTTTTCGAAAAGAGCCATTAA
CCTCTACGGTCATTgcgaagaaagaaaaagtggATGGGGCGATTTTCTGA
ACGCTCTTTAACTTTCGGGAAAAACATTGTCTTGCTCGATGAGGAGCACC
TCGAGGGTCACTTAACTTTGTACCGGCCACTCTTTTTTCCCTGAAATCAA
TAATCCATCTCCCTATAGCGTCATTTCTAGAGATAGACCTTTATTGTGCC
CAGAAAACCCACAAGAGTACTATCTATATACTTCAAAGGCCTCAGCTTCC
ACTTTGTCCTTGCTGTTTACTTgcttttggaggaagagtaGTCCAAGCTG
GGAAAATACGAGTGCTGTGAGCTAATGAAGGAGAAGTATAAGT

Coding sequence (CDS) from alignment at CM002462.1:28387..30629+

>rna3780 ID=rna3780|Name=rna3780|organism=Nannochloropsis gaditana|type=CDS|length=1452bp|location=Sequence derived from alignment at CM002462.1:28387..30629+ (Nannochloropsis gaditana)
ATGGCCGATATTGTCAAGCCCAAAGTCCtcgccgaggaggaggagcagAT
CCACCGCATCCGCATCACGCTCACCTCGCTGAACGTGAAGGACCTGGAAA
AGGTTTGCGAGGCATTGAAGACTCGAGCTGTGAATCATAGCAAGCACTTA
AAGGTTGCTGGGCCTGTTcgACTCCCGACGAAGAAGCTGAAGATCACGAC
CCGCAAATCTCCCAACGGCGAGGGAACCAACACGTGGGACCGGTTCCAGA
TGCGCATCCACAAACGTATTATTGACCTGCACACGTCTTCGGATGCTGTG
AAGAGCATCACGAACATCGTGATTGAGCCCGGGGTCGAAGTCGAAATTAC
CATCAACAACTGAATGGCCGATATTGTCAAGCCCAAAGTCCtcgccgagg
aggaggagcagATCCACCGCATCCGCATCACGCTCACCTCGCTGAACGTG
AAGGACCTGGAAAAGGTTTGCGAGGCATTGAAGACTCGAGCTGTGAATCA
TAGCAAGCACTTAAAGGTTGCTGGGCCTGTTcgACTCCCGACGAAGAAGC
TGAAGATCACGACCCGCAAATCTCCCAACGGCGAGGGAACCAACACGTGG
GACCGGTTCCAGATGCGCATCCACAAACGTATTATTGACCTGCACACGTC
TTCGGATGCTGTGAAGAGCATCACGAACATCGTGATTGAGCCCGGGGTCG
AAGTCGAAATTACCATCAACAACTGAATGGCCGATATTGTCAAGCCCAAA
GTCCtcgccgaggaggaggagcagATCCACCGCATCCGCATCACGCTCAC
CTCGCTGAACGTGAAGGACCTGGAAAAGGTTTGCGAGGCATTGAAGACTC
GAGCTGTGAATCATAGCAAGCACTTAAAGGTTGCTGGGCCTGTTcgACTC
CCGACGAAGAAGCTGAAGATCACGACCCGCAAATCTCCCAACGGCGAGGG
AACCAACACGTGGGACCGGTTCCAGATGCGCATCCACAAACGTATTATTG
ACCTGCACACGTCTTCGGATGCTGTGAAGAGCATCACGAACATCGTGATT
GAGCCCGGGGTCGAAGTCGAAATTACCATCAACAACTGAATGGCCGATAT
TGTCAAGCCCAAAGTCCtcgccgaggaggaggagcagATCCACCGCATCC
GCATCACGCTCACCTCGCTGAACGTGAAGGACCTGGAAAAGGTTTGCGAG
GCATTGAAGACTCGAGCTGTGAATCATAGCAAGCACTTAAAGGTTGCTGG
GCCTGTTcgACTCCCGACGAAGAAGCTGAAGATCACGACCCGCAAATCTC
CCAACGGCGAGGGAACCAACACGTGGGACCGGTTCCAGATGCGCATCCAC
AAACGTATTATTGACCTGCACACGTCTTCGGATGCTGTGAAGAGCATCAC
GAACATCGTGATTGAGCCCGGGGTCGAAGTCGAAATTACCATCAACAACT
GA

Synonyms

Publications