EWM26907.1, cds3771 (CDS) Nannochloropsis gaditana

Overview
NameEWM26907.1
Unique Namecds3771
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002462.1:29211..29258 +
Alignment locationCM002462.1:29446..29567 +
Alignment locationCM002462.1:29761..29839 +
Alignment locationCM002462.1:30040..30153 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26907.1
Productribosomal protein s20
Orig transcript idgnl|cribi|Naga_100103g9.7044.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:29211..29258 +
CM002462.1supercontigCM002462.1:29446..29567 +
CM002462.1supercontigCM002462.1:29761..29839 +
CM002462.1supercontigCM002462.1:30040..30153 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0015935small ribosomal subunit
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR027486Ribosomal_S10_dom
IPR005729Ribosomal_S10_euk/arc
IPR001848Ribosomal_S10
Homology
BLAST of EWM26907.1 vs. NCBI_GenBank
Match: gi|585109037|gb|EWM26907.1| (ribosomal protein s20 [Nannochloropsis gaditana])

HSP 1 Score: 241.506 bits (615), Expect = 8.025e-81
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0
Query:    1 MADIVKPKVLAEEEEQIHRIRITLTSLNVKDLEKVCEALKTRAVNHSKHLKVAGPVRLPTKKLKITTRKSPNGEGTNTWDRFQMRIHKRIIDLHTSSDAVKSITNIVIEPGVEVEITINN 120
            MADIVKPKVLAEEEEQIHRIRITLTSLNVKDLEKVCEALKTRAVNHSKHLKVAGPVRLPTKKLKITTRKSPNGEGTNTWDRFQMRIHKRIIDLHTSSDAVKSITNIVIEPGVEVEITINN
Sbjct:    1 MADIVKPKVLAEEEEQIHRIRITLTSLNVKDLEKVCEALKTRAVNHSKHLKVAGPVRLPTKKLKITTRKSPNGEGTNTWDRFQMRIHKRIIDLHTSSDAVKSITNIVIEPGVEVEITINN 120          
BLAST of EWM26907.1 vs. NCBI_GenBank
Match: gi|153792261|ref|NP_001093382.1| (uncharacterized protein LOC100101334 [Xenopus laevis] >gi|148921641|gb|AAI46637.1| LOC100101334 protein [Xenopus laevis])

HSP 1 Score: 210.69 bits (535), Expect = 1.238e-68
Identity = 101/120 (84.17%), Postives = 114/120 (95.00%), Query Frame = 0
Query:    1 MADIVKPKVLAEEEEQIHRIRITLTSLNVKDLEKVCEALKTRAVNHSKHLKVAGPVRLPTKKLKITTRKSPNGEGTNTWDRFQMRIHKRIIDLHTSSDAVKSITNIVIEPGVEVEITINN 120
            MADIVKPK LAE+++QIHRIRITLTSLNVK+LEKVC+ LK RA++H++HLKVAGPVRLPTK LKITTRKSP GEGTNTWDR+QMRIHKRIIDLH++SDAVK IT+IVIEPGVEVEITINN
Sbjct:    1 MADIVKPKALAEDDQQIHRIRITLTSLNVKNLEKVCDVLKKRALDHNQHLKVAGPVRLPTKTLKITTRKSPCGEGTNTWDRYQMRIHKRIIDLHSASDAVKHITSIVIEPGVEVEITINN 120          
BLAST of EWM26907.1 vs. NCBI_GenBank
Match: gi|298707100|emb|CBJ29892.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 166.392 bits (420), Expect = 5.317e-51
Identity = 85/120 (70.83%), Postives = 98/120 (81.67%), Query Frame = 0
Query:    1 MADIVKPKVLAEEEEQIHRIRITLTSLNVKDLEKVCEALKTRAVNHSKHLKVAGPVRLPTKKLKITTRKSPNGEGTNTWDRFQMRIHKRIIDLHTSSDAVKSITNIVIEPGVEVEITINN 120
            M+  VK K L +EE ++HRIRITLTS NVK+LEKVC  LK  AV   K LKV+GPVRLPTKKLKI TRKSP GEGTNTWDRF+MRIHKRI+DLH+ S+ VK IT+I IEPGVEVE+TI +
Sbjct:    1 MSAYVKGKGLGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVE--KKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIAD 118          
BLAST of EWM26907.1 vs. NCBI_GenBank
Match: gi|953502057|emb|CEG36736.1| (40s ribosomal protein s20 [Plasmopara halstedii])

HSP 1 Score: 165.622 bits (418), Expect = 8.720e-51
Identity = 85/120 (70.83%), Postives = 99/120 (82.50%), Query Frame = 0
Query:    1 MADIVKPKVLAEEEEQIHRIRITLTSLNVKDLEKVCEALKTRAVNHSKHLKVAGPVRLPTKKLKITTRKSPNGEGTNTWDRFQMRIHKRIIDLHTSSDAVKSITNIVIEPGVEVEITINN 120
            M+ + KPK +  EE +IHRIRITLTS NVK+LEKVC  LK  AV+  K+LKV+GPVRLPTK L++TTRKSP GEGTNTWDRF+MRIHKRIIDLH  SD VK IT+I IEPGVEVE+TI +
Sbjct:    1 MSLVSKPKTVEAEETRIHRIRITLTSRNVKNLEKVCADLKRGAVD--KNLKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTIAD 118          
BLAST of EWM26907.1 vs. NCBI_GenBank
Match: gi|566013272|gb|ETI36183.1| (40S ribosomal protein S20 [Phytophthora parasitica P1569] >gi|567950698|gb|ETK76406.1| 40S ribosomal protein S20 [Phytophthora parasitica] >gi|568008860|gb|ETL83074.1| 40S ribosomal protein S20 [Phytophthora parasitica] >gi|568038776|gb|ETM36293.1| 40S ribosomal protein S20 [Phytophthora parasitica] >gi|570970997|gb|ETP34116.1| 40S ribosomal protein S20 [Phytophthora parasitica P10297] >gi|970659664|gb|KUF97286.1| hypothetical protein AM588_10006600 [Phytophthora nicotianae] >gi|970660657|gb|KUF98187.1| 40S ribosomal protein S20 [Phytophthora nicotianae] >gi|1214656146|gb|OWY90353.1| 40S ribosomal protein S20 [Phytophthora megakarya])

HSP 1 Score: 164.851 bits (416), Expect = 2.028e-50
Identity = 85/120 (70.83%), Postives = 99/120 (82.50%), Query Frame = 0
Query:    1 MADIVKPKVLAEEEEQIHRIRITLTSLNVKDLEKVCEALKTRAVNHSKHLKVAGPVRLPTKKLKITTRKSPNGEGTNTWDRFQMRIHKRIIDLHTSSDAVKSITNIVIEPGVEVEITINN 120
            M+ + KPK +  EE +IHRIRITLTS NVK+LEKVC  LK  AV+  K+LKV+GPVRLPTK L++TTRKSP GEGTNTWDRF+MRIHKRIIDLH  SD VK IT+I IEPGVEVE+TI +
Sbjct:    1 MSLVNKPKTVEAEETRIHRIRITLTSRNVKNLEKVCADLKRGAVD--KNLKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTIAD 118          
BLAST of EWM26907.1 vs. NCBI_GenBank
Match: gi|675174473|ref|XP_008896121.1| (40S ribosomal protein S20 [Phytophthora parasitica INRA-310] >gi|568103793|gb|ETN18450.1| 40S ribosomal protein S20 [Phytophthora parasitica INRA-310])

HSP 1 Score: 165.236 bits (417), Expect = 3.530e-50
Identity = 85/120 (70.83%), Postives = 99/120 (82.50%), Query Frame = 0
Query:    1 MADIVKPKVLAEEEEQIHRIRITLTSLNVKDLEKVCEALKTRAVNHSKHLKVAGPVRLPTKKLKITTRKSPNGEGTNTWDRFQMRIHKRIIDLHTSSDAVKSITNIVIEPGVEVEITINN 120
            M+ + KPK +  EE +IHRIRITLTS NVK+LEKVC  LK  AV+  K+LKV+GPVRLPTK L++TTRKSP GEGTNTWDRF+MRIHKRIIDLH  SD VK IT+I IEPGVEVE+TI +
Sbjct:   28 MSLVNKPKTVEAEETRIHRIRITLTSRNVKNLEKVCADLKRGAVD--KNLKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTIAD 145          
BLAST of EWM26907.1 vs. NCBI_GenBank
Match: gi|695396791|ref|XP_009521572.1| (hypothetical protein PHYSODRAFT_285181 [Phytophthora sojae] >gi|348686469|gb|EGZ26284.1| hypothetical protein PHYSODRAFT_285181 [Phytophthora sojae])

HSP 1 Score: 163.696 bits (413), Expect = 5.498e-50
Identity = 84/120 (70.00%), Postives = 99/120 (82.50%), Query Frame = 0
Query:    1 MADIVKPKVLAEEEEQIHRIRITLTSLNVKDLEKVCEALKTRAVNHSKHLKVAGPVRLPTKKLKITTRKSPNGEGTNTWDRFQMRIHKRIIDLHTSSDAVKSITNIVIEPGVEVEITINN 120
            M+ + KPK +  EE +IHRIRITL+S NVK+LEKVC  LK  AV+  K+LKV+GPVRLPTK L++TTRKSP GEGTNTWDRF+MRIHKRIIDLH  SD VK IT+I IEPGVEVE+TI +
Sbjct:    1 MSLVNKPKTVEAEETRIHRIRITLSSRNVKNLEKVCADLKRGAVD--KNLKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTIAD 118          
BLAST of EWM26907.1 vs. NCBI_GenBank
Match: gi|567979367|gb|ETL29846.1| (40S ribosomal protein S20 [Phytophthora parasitica] >gi|570316957|gb|ETO64905.1| 40S ribosomal protein S20 [Phytophthora parasitica P1976] >gi|570940750|gb|ETP06007.1| 40S ribosomal protein S20 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 165.236 bits (417), Expect = 6.273e-50
Identity = 85/120 (70.83%), Postives = 99/120 (82.50%), Query Frame = 0
Query:    1 MADIVKPKVLAEEEEQIHRIRITLTSLNVKDLEKVCEALKTRAVNHSKHLKVAGPVRLPTKKLKITTRKSPNGEGTNTWDRFQMRIHKRIIDLHTSSDAVKSITNIVIEPGVEVEITINN 120
            M+ + KPK +  EE +IHRIRITLTS NVK+LEKVC  LK  AV+  K+LKV+GPVRLPTK L++TTRKSP GEGTNTWDRF+MRIHKRIIDLH  SD VK IT+I IEPGVEVE+TI +
Sbjct:   52 MSLVNKPKTVEAEETRIHRIRITLTSRNVKNLEKVCADLKRGAVD--KNLKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTIAD 169          
BLAST of EWM26907.1 vs. NCBI_GenBank
Match: gi|673025998|ref|XP_008866960.1| (40S ribosomal protein S20 [Aphanomyces invadans] >gi|574477007|gb|ETW04004.1| 40S ribosomal protein S20 [Aphanomyces invadans])

HSP 1 Score: 161.384 bits (407), Expect = 5.536e-49
Identity = 83/115 (72.17%), Postives = 95/115 (82.61%), Query Frame = 0
Query:    6 KPKVLAEEEEQIHRIRITLTSLNVKDLEKVCEALKTRAVNHSKHLKVAGPVRLPTKKLKITTRKSPNGEGTNTWDRFQMRIHKRIIDLHTSSDAVKSITNIVIEPGVEVEITINN 120
            KP     EE +IHRIRITLTS NVK+LEKVC  LK  AV+  K+LKVAGPVRLPTK L++TTRKSP GEGTNTWDRF+MRIHKRIIDLH+ S+ VK IT+I IEPGVEVE+TI +
Sbjct:    8 KPTGFEGEESRIHRIRITLTSRNVKNLEKVCADLKKGAVD--KNLKVAGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHSPSEIVKQITSISIEPGVEVEVTIAD 120          
BLAST of EWM26907.1 vs. NCBI_GenBank
Match: gi|223999925|ref|XP_002289635.1| (RS20, ribosomal protein 20 40S small ribosomal subunit [Thalassiosira pseudonana CCMP1335] >gi|220974843|gb|EED93172.1| RS20, ribosomal protein 20 40S small ribosomal subunit, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 160.229 bits (404), Expect = 1.283e-48
Identity = 78/110 (70.91%), Postives = 93/110 (84.55%), Query Frame = 0
Query:   11 AEEEEQIHRIRITLTSLNVKDLEKVCEALKTRAVNHSKHLKVAGPVRLPTKKLKITTRKSPNGEGTNTWDRFQMRIHKRIIDLHTSSDAVKSITNIVIEPGVEVEITINN 120
            A+   Q+HRIRITLTS NVK+LEKVC  LK  A++  K L V+GPVR+PTKKLKITTRK+P+GEGTNTWDRF+MRIHKR+IDLH  SD VK IT+I IEPGVEV++TIN+
Sbjct:   16 ADAGAQVHRIRITLTSRNVKNLEKVCADLKKGALD--KKLNVSGPVRMPTKKLKITTRKAPSGEGTNTWDRFEMRIHKRLIDLHAPSDVVKQITSISIEPGVEVDVTIND 123          
The following BLAST results are available for this feature:
BLAST of EWM26907.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109037|gb|EWM26907.1|8.025e-81100.00ribosomal protein s20 [Nannochloropsis gaditana][more]
gi|153792261|ref|NP_001093382.1|1.238e-6884.17uncharacterized protein LOC100101334 [Xenopus laev... [more]
gi|298707100|emb|CBJ29892.1|5.317e-5170.83conserved unknown protein [Ectocarpus siliculosus][more]
gi|953502057|emb|CEG36736.1|8.720e-5170.8340s ribosomal protein s20 [Plasmopara halstedii][more]
gi|566013272|gb|ETI36183.1|2.028e-5070.8340S ribosomal protein S20 [Phytophthora parasitica... [more]
gi|675174473|ref|XP_008896121.1|3.530e-5070.8340S ribosomal protein S20 [Phytophthora parasitica... [more]
gi|695396791|ref|XP_009521572.1|5.498e-5070.00hypothetical protein PHYSODRAFT_285181 [Phytophtho... [more]
gi|567979367|gb|ETL29846.1|6.273e-5070.8340S ribosomal protein S20 [Phytophthora parasitica... [more]
gi|673025998|ref|XP_008866960.1|5.536e-4972.1740S ribosomal protein S20 [Aphanomyces invadans] >... [more]
gi|223999925|ref|XP_002289635.1|1.283e-4870.91RS20, ribosomal protein 20 40S small ribosomal sub... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3780rna3780Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications