EWM26907.1, cds3771 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26907.1 vs. NCBI_GenBank
Match: gi|585109037|gb|EWM26907.1| (ribosomal protein s20 [Nannochloropsis gaditana]) HSP 1 Score: 241.506 bits (615), Expect = 8.025e-81 Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0
Query: 1 MADIVKPKVLAEEEEQIHRIRITLTSLNVKDLEKVCEALKTRAVNHSKHLKVAGPVRLPTKKLKITTRKSPNGEGTNTWDRFQMRIHKRIIDLHTSSDAVKSITNIVIEPGVEVEITINN 120
MADIVKPKVLAEEEEQIHRIRITLTSLNVKDLEKVCEALKTRAVNHSKHLKVAGPVRLPTKKLKITTRKSPNGEGTNTWDRFQMRIHKRIIDLHTSSDAVKSITNIVIEPGVEVEITINN
Sbjct: 1 MADIVKPKVLAEEEEQIHRIRITLTSLNVKDLEKVCEALKTRAVNHSKHLKVAGPVRLPTKKLKITTRKSPNGEGTNTWDRFQMRIHKRIIDLHTSSDAVKSITNIVIEPGVEVEITINN 120
BLAST of EWM26907.1 vs. NCBI_GenBank
Match: gi|153792261|ref|NP_001093382.1| (uncharacterized protein LOC100101334 [Xenopus laevis] >gi|148921641|gb|AAI46637.1| LOC100101334 protein [Xenopus laevis]) HSP 1 Score: 210.69 bits (535), Expect = 1.238e-68 Identity = 101/120 (84.17%), Postives = 114/120 (95.00%), Query Frame = 0
Query: 1 MADIVKPKVLAEEEEQIHRIRITLTSLNVKDLEKVCEALKTRAVNHSKHLKVAGPVRLPTKKLKITTRKSPNGEGTNTWDRFQMRIHKRIIDLHTSSDAVKSITNIVIEPGVEVEITINN 120
MADIVKPK LAE+++QIHRIRITLTSLNVK+LEKVC+ LK RA++H++HLKVAGPVRLPTK LKITTRKSP GEGTNTWDR+QMRIHKRIIDLH++SDAVK IT+IVIEPGVEVEITINN
Sbjct: 1 MADIVKPKALAEDDQQIHRIRITLTSLNVKNLEKVCDVLKKRALDHNQHLKVAGPVRLPTKTLKITTRKSPCGEGTNTWDRYQMRIHKRIIDLHSASDAVKHITSIVIEPGVEVEITINN 120
BLAST of EWM26907.1 vs. NCBI_GenBank
Match: gi|298707100|emb|CBJ29892.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 166.392 bits (420), Expect = 5.317e-51 Identity = 85/120 (70.83%), Postives = 98/120 (81.67%), Query Frame = 0
Query: 1 MADIVKPKVLAEEEEQIHRIRITLTSLNVKDLEKVCEALKTRAVNHSKHLKVAGPVRLPTKKLKITTRKSPNGEGTNTWDRFQMRIHKRIIDLHTSSDAVKSITNIVIEPGVEVEITINN 120
M+ VK K L +EE ++HRIRITLTS NVK+LEKVC LK AV K LKV+GPVRLPTKKLKI TRKSP GEGTNTWDRF+MRIHKRI+DLH+ S+ VK IT+I IEPGVEVE+TI +
Sbjct: 1 MSAYVKGKGLGQEEARVHRIRITLTSKNVKNLEKVCADLKKGAVE--KKLKVSGPVRLPTKKLKIVTRKSPCGEGTNTWDRFEMRIHKRILDLHSPSEIVKEITSISIEPGVEVEVTIAD 118
BLAST of EWM26907.1 vs. NCBI_GenBank
Match: gi|953502057|emb|CEG36736.1| (40s ribosomal protein s20 [Plasmopara halstedii]) HSP 1 Score: 165.622 bits (418), Expect = 8.720e-51 Identity = 85/120 (70.83%), Postives = 99/120 (82.50%), Query Frame = 0
Query: 1 MADIVKPKVLAEEEEQIHRIRITLTSLNVKDLEKVCEALKTRAVNHSKHLKVAGPVRLPTKKLKITTRKSPNGEGTNTWDRFQMRIHKRIIDLHTSSDAVKSITNIVIEPGVEVEITINN 120
M+ + KPK + EE +IHRIRITLTS NVK+LEKVC LK AV+ K+LKV+GPVRLPTK L++TTRKSP GEGTNTWDRF+MRIHKRIIDLH SD VK IT+I IEPGVEVE+TI +
Sbjct: 1 MSLVSKPKTVEAEETRIHRIRITLTSRNVKNLEKVCADLKRGAVD--KNLKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTIAD 118
BLAST of EWM26907.1 vs. NCBI_GenBank
Match: gi|566013272|gb|ETI36183.1| (40S ribosomal protein S20 [Phytophthora parasitica P1569] >gi|567950698|gb|ETK76406.1| 40S ribosomal protein S20 [Phytophthora parasitica] >gi|568008860|gb|ETL83074.1| 40S ribosomal protein S20 [Phytophthora parasitica] >gi|568038776|gb|ETM36293.1| 40S ribosomal protein S20 [Phytophthora parasitica] >gi|570970997|gb|ETP34116.1| 40S ribosomal protein S20 [Phytophthora parasitica P10297] >gi|970659664|gb|KUF97286.1| hypothetical protein AM588_10006600 [Phytophthora nicotianae] >gi|970660657|gb|KUF98187.1| 40S ribosomal protein S20 [Phytophthora nicotianae] >gi|1214656146|gb|OWY90353.1| 40S ribosomal protein S20 [Phytophthora megakarya]) HSP 1 Score: 164.851 bits (416), Expect = 2.028e-50 Identity = 85/120 (70.83%), Postives = 99/120 (82.50%), Query Frame = 0
Query: 1 MADIVKPKVLAEEEEQIHRIRITLTSLNVKDLEKVCEALKTRAVNHSKHLKVAGPVRLPTKKLKITTRKSPNGEGTNTWDRFQMRIHKRIIDLHTSSDAVKSITNIVIEPGVEVEITINN 120
M+ + KPK + EE +IHRIRITLTS NVK+LEKVC LK AV+ K+LKV+GPVRLPTK L++TTRKSP GEGTNTWDRF+MRIHKRIIDLH SD VK IT+I IEPGVEVE+TI +
Sbjct: 1 MSLVNKPKTVEAEETRIHRIRITLTSRNVKNLEKVCADLKRGAVD--KNLKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTIAD 118
BLAST of EWM26907.1 vs. NCBI_GenBank
Match: gi|675174473|ref|XP_008896121.1| (40S ribosomal protein S20 [Phytophthora parasitica INRA-310] >gi|568103793|gb|ETN18450.1| 40S ribosomal protein S20 [Phytophthora parasitica INRA-310]) HSP 1 Score: 165.236 bits (417), Expect = 3.530e-50 Identity = 85/120 (70.83%), Postives = 99/120 (82.50%), Query Frame = 0
Query: 1 MADIVKPKVLAEEEEQIHRIRITLTSLNVKDLEKVCEALKTRAVNHSKHLKVAGPVRLPTKKLKITTRKSPNGEGTNTWDRFQMRIHKRIIDLHTSSDAVKSITNIVIEPGVEVEITINN 120
M+ + KPK + EE +IHRIRITLTS NVK+LEKVC LK AV+ K+LKV+GPVRLPTK L++TTRKSP GEGTNTWDRF+MRIHKRIIDLH SD VK IT+I IEPGVEVE+TI +
Sbjct: 28 MSLVNKPKTVEAEETRIHRIRITLTSRNVKNLEKVCADLKRGAVD--KNLKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTIAD 145
BLAST of EWM26907.1 vs. NCBI_GenBank
Match: gi|695396791|ref|XP_009521572.1| (hypothetical protein PHYSODRAFT_285181 [Phytophthora sojae] >gi|348686469|gb|EGZ26284.1| hypothetical protein PHYSODRAFT_285181 [Phytophthora sojae]) HSP 1 Score: 163.696 bits (413), Expect = 5.498e-50 Identity = 84/120 (70.00%), Postives = 99/120 (82.50%), Query Frame = 0
Query: 1 MADIVKPKVLAEEEEQIHRIRITLTSLNVKDLEKVCEALKTRAVNHSKHLKVAGPVRLPTKKLKITTRKSPNGEGTNTWDRFQMRIHKRIIDLHTSSDAVKSITNIVIEPGVEVEITINN 120
M+ + KPK + EE +IHRIRITL+S NVK+LEKVC LK AV+ K+LKV+GPVRLPTK L++TTRKSP GEGTNTWDRF+MRIHKRIIDLH SD VK IT+I IEPGVEVE+TI +
Sbjct: 1 MSLVNKPKTVEAEETRIHRIRITLSSRNVKNLEKVCADLKRGAVD--KNLKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTIAD 118
BLAST of EWM26907.1 vs. NCBI_GenBank
Match: gi|567979367|gb|ETL29846.1| (40S ribosomal protein S20 [Phytophthora parasitica] >gi|570316957|gb|ETO64905.1| 40S ribosomal protein S20 [Phytophthora parasitica P1976] >gi|570940750|gb|ETP06007.1| 40S ribosomal protein S20 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 165.236 bits (417), Expect = 6.273e-50 Identity = 85/120 (70.83%), Postives = 99/120 (82.50%), Query Frame = 0
Query: 1 MADIVKPKVLAEEEEQIHRIRITLTSLNVKDLEKVCEALKTRAVNHSKHLKVAGPVRLPTKKLKITTRKSPNGEGTNTWDRFQMRIHKRIIDLHTSSDAVKSITNIVIEPGVEVEITINN 120
M+ + KPK + EE +IHRIRITLTS NVK+LEKVC LK AV+ K+LKV+GPVRLPTK L++TTRKSP GEGTNTWDRF+MRIHKRIIDLH SD VK IT+I IEPGVEVE+TI +
Sbjct: 52 MSLVNKPKTVEAEETRIHRIRITLTSRNVKNLEKVCADLKRGAVD--KNLKVSGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHAPSDIVKQITSISIEPGVEVEVTIAD 169
BLAST of EWM26907.1 vs. NCBI_GenBank
Match: gi|673025998|ref|XP_008866960.1| (40S ribosomal protein S20 [Aphanomyces invadans] >gi|574477007|gb|ETW04004.1| 40S ribosomal protein S20 [Aphanomyces invadans]) HSP 1 Score: 161.384 bits (407), Expect = 5.536e-49 Identity = 83/115 (72.17%), Postives = 95/115 (82.61%), Query Frame = 0
Query: 6 KPKVLAEEEEQIHRIRITLTSLNVKDLEKVCEALKTRAVNHSKHLKVAGPVRLPTKKLKITTRKSPNGEGTNTWDRFQMRIHKRIIDLHTSSDAVKSITNIVIEPGVEVEITINN 120
KP EE +IHRIRITLTS NVK+LEKVC LK AV+ K+LKVAGPVRLPTK L++TTRKSP GEGTNTWDRF+MRIHKRIIDLH+ S+ VK IT+I IEPGVEVE+TI +
Sbjct: 8 KPTGFEGEESRIHRIRITLTSRNVKNLEKVCADLKKGAVD--KNLKVAGPVRLPTKILRLTTRKSPCGEGTNTWDRFEMRIHKRIIDLHSPSEIVKQITSISIEPGVEVEVTIAD 120
BLAST of EWM26907.1 vs. NCBI_GenBank
Match: gi|223999925|ref|XP_002289635.1| (RS20, ribosomal protein 20 40S small ribosomal subunit [Thalassiosira pseudonana CCMP1335] >gi|220974843|gb|EED93172.1| RS20, ribosomal protein 20 40S small ribosomal subunit, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 160.229 bits (404), Expect = 1.283e-48 Identity = 78/110 (70.91%), Postives = 93/110 (84.55%), Query Frame = 0
Query: 11 AEEEEQIHRIRITLTSLNVKDLEKVCEALKTRAVNHSKHLKVAGPVRLPTKKLKITTRKSPNGEGTNTWDRFQMRIHKRIIDLHTSSDAVKSITNIVIEPGVEVEITINN 120
A+ Q+HRIRITLTS NVK+LEKVC LK A++ K L V+GPVR+PTKKLKITTRK+P+GEGTNTWDRF+MRIHKR+IDLH SD VK IT+I IEPGVEV++TIN+
Sbjct: 16 ADAGAQVHRIRITLTSRNVKNLEKVCADLKKGALD--KKLNVSGPVRMPTKKLKITTRKAPSGEGTNTWDRFEMRIHKRLIDLHAPSDVVKQITSISIEPGVEVDVTIND 123 The following BLAST results are available for this feature:
BLAST of EWM26907.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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