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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100103g11.7041.mrna |
| Orig protein id | gnl|cribi|Naga_100103g11.7041 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002462.1 | supercontig | CM002462.1:19967..21978 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3778 ID=rna3778|Name=rna3778|organism=Nannochloropsis gaditana|type=mRNA|length=1542bp
TGGACATGTATCCTCCGCTCACAGGCAATTTTATGCGTTCGCGGGACAGT
ATTCTTCCTCCGTTATCGTCCCTCACAGATAGCGAAATCAATGCTGACAT
GAGTGAGAGCAAGGTTTTTGAGGGGGAGGGCGGTAGTAATGAAGGGCTTC
CGGTCAATGAAGACAGTAAAAACAAAGGAGGTAGAAAAAAAACTGAGAAG
AAACATAAAGATGTACAGCAGGAGGACTTGGAGAAAGGGGAGGACAGAAG
AGATAGCAAAGAAGATACGAAATTGTATAATCTAACAGAGAAAGGCACTT
CATGTGTCTCACCATCGACTCCAACCTGCCGTCGCTTCAGGCCGTGGGGT
AGACTCAAAGCTCATTCATGGCCCGCGATGCTATCAAAGGATCAAAAGGA
AAAAGCTCTGTCAGAGAATCTGTACCAAAGAAGAGGAGAGGGTGGGAGTG
CAGATGTGGAGGAGAAAGAGGGGACTGAGGAACCACAGAGTGTTTCCCCT
TCGATCTCCCTCCTGTCCTCTTTGCACTCAAGTGTGCGGAGCATCGTCGG
ACAGATTGGTAACCACTTGTATCAGATGCCTAAGTGGAAGTATCGCTTGA
TGGTATCTTCTATTGTAGTCCTGCTCATCTCCTTCCTGCTCCTCCTCTTC
GTTTCAGTCGTCTACGGTTTCGGTATGAGCCTACCGCACATTGAGGTAGT
GGCGGTAGATGTGGTCTTGCCCCTCCCTCCAGACGGCTCGCTCCCTGTCC
GCTCTCTCATGCGCGTCAACAACCCCAACCGCTTTTCAATTTTGGTGCAT
CCCACAGACATTAGTGTTTACTCCCACCCAACCCGCTCCCCCGGGTCTTT
GCTGGGCGTTTCGACCATTCCAGAGCATCTTCTGCACGCCCGCGAGGGCG
CCCACACTACGGAGTCTGTCTTTGTCGTGCGCGACCTGGGCTCGATTGAG
GGTGGTCCAGACCTAGCCGAAGCCGTGTTGACCGGTGGGCCTACATTTTT
TTACACGAGGGCCAAGGCGGAGCTCACGGTCATGTCTTTGGGATTCATGT
CCATTGGTCGCGCCTATATTTTAGAGTGCACTGTTTTGAAATATTGGGGT
AAGGACATTCTTCTAAGCGACTGCTACGGCCGTTTCACACGCTAACGGCA
TACCTTCGCGCGATTCAACACTGCACGCCTCGACATAGACAAGCATAAGT
TGACCTTTTTTTGTCTGCAGGGAAAATAATGTATCAAATCCGTCTGGTCT
ATTTTTCCGACTTGGACTTTCCCTTCGATTTGCAGGAAATTTCAGGGGCA
TGTATTTGTAACAGAAATCATATTGGGAAAGCATCAGCATTCAATGTCTC
TATCAGAAATAGGTTACAAGACTCTTCAAAGTCGACTTGGAATACAACTC
TTTTAAATAGGTCATTTATAGAAAGGCTTTGATTAAGCATATCTTTCTTT
CTTTGATTTGAAAACGAAAATTGCGCTCAAACGTCCAGCACCCTTTTGTC
AACACCGACTACTTTCCAATCCAACCTCTGGGATGCTCGACA back to topprotein sequence of rna3778 >rna3778-protein ID=rna3778-protein|Name=rna3778|organism=Nannochloropsis gaditana|type=polypeptide|length=211bp
MLSKDQKEKALSENLYQRRGEGGSADVEEKEGTEEPQSVSPSISLLSSLH
SSVRSIVGQIGNHLYQMPKWKYRLMVSSIVVLLISFLLLLFVSVVYGFGM
SLPHIEVVAVDVVLPLPPDGSLPVRSLMRVNNPNRFSILVHPTDISVYSH
PTRSPGSLLGVSTIPEHLLHAREGAHTTESVFVVRDLGSIEVCQVRPFSF
QNFLMRVSSFY back to topmRNA from alignment at CM002462.1:19967..21978+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3778 ID=rna3778|Name=rna3778|organism=Nannochloropsis gaditana|type=mRNA|length=2012bp|location=Sequence derived from alignment at CM002462.1:19967..21978+ (Nannochloropsis gaditana)
ATGCTATCAAAGGAtcaaaaggaaaaagctCTGTCAGAGAATCTGTacca
aagaagaggagagggtgggagtgcagatgtggaggagaaagaggggactG
AGGAACCACAGAGTGTTTCCCCTTcgatctccctcctgtcctcttTGCAC
TCAAGTGTGCGGAGCATCGTCGGACAGATTGGTAACCACTTGTATCAGGT
ATGGCAAGAGAAAGGCAGGTTGCACATTGAATGGAAAAGGTTGCAGAGGG
GGCGTTGACCTAGTATTTTGCGAGCGTACTTGGTTTTATAATAAACCGCT
ACATACCCACAGATGCCTAAGTGGAAGTATCGCTTGATGGTATCTTCTAT
TGTAGTCCtgctcatctccttcctgctcctcctcttcgtttCAGTCGTCT
ACGGTTTCGGTATGAGCCTACCGCACATTGAGGTATTGCTGTGAGAACAT
GACAATCAAAATTCGTTTTTTAACCCCCTTGCTTAACATACGAcgttccc
tcttctcctgaTACACATACACCGGATTTGATTGACTCGTTCCCATTTGC
TATCGCAGGTAGTGGCGGTAGATGTggtcttgcccctccctccagacgGC
TCGCTCCCTGTCCGCTCTCTCATGCGCGTCAACAACCCCAACCGCTTTTC
AATTTTGGTACGGTATTTTATGGCCACTCATCCTGTTCCTCCTAGTTCAG
TAGGGGACGAAAGATTCTCTTGGATAGACTTGTCCGATAGCACTCACCAG
CTCGCAACCTAGGGTCGGGGACGCTCTCTCAACTAACCCGTTTCCGCCGT
ATGCTCGCGCCACGTGTTcggcttcctttcctcgtaTCCGGACAGGTGCA
TCCCACAGACATTAGTGTTTACTCCCACCCAACCCGCTCCCCCGGGTCTT
TGCTGGGCGTTTCGACCATTCCAGAGCATCTTCTGCACGCCCGCGAGGGC
GCCCACACTACGGAGTCTGTCTTTGTCGTGCGCGACCTGGGCTCGATTGA
GGTGTGTCAAGTCCGAccattttcttttcaaaacTTTTTGATGCGTGTGT
CCTCTTTTTATTGAGTCCATTCATGCGCTTTTGTGCAAGATATGTCCTTC
TTAACCGCCCTCGCTATCCGCAAGTCAATACGGGAGGGGAATCACTGCGT
ACGTGGAAGTCAGAGATTATAAGTATAACAAAGACATTACTGTCAAACGA
GAAATCCTTCGGATTGTCCTTTCGCATCGATGGGGAAGGTCGTCGGGTTG
ACGTCCGCTTCTCCTATCTCTCGCATCCCTCACAGGGTGGTCCAGACCTA
GCCGAAGCCGTGTTGACCGGTGGGCCTACATTTTTTTACACGAGGGCCAA
GGCGGAGCTCACGGTCATGTCTTTGGGATTCATGTCCATTGGTCGCGCCT
ATATTTTAGAGTGCACTGTTTTGAAATATTGGGGTAAGATGACATGCTGA
ATGAGAGCACATGCCAGCCAAGGATTCCTCTGTGGTCGTAACACACGACT
TCTAATGCCATACAGCTGGTAATTACTCATGCGTCTGTCATTTACATTCC
GTCTACCTGCACAATTAGGTAAGGACATTCTTCTAAGCGACTGCTACGGC
CGTTTCACACGCTAACGGCATACCTTCGCGCGATTCAACACTGCACGCCT
CGACATAGACAAGCATAAGTTGACCTTTTTTTGTCTGCAGGGAAAATAAT
GTATCAAATCCGTCTGGTCTATTTTTCCGACTTGGACTTTCCCTTCGATT
TGCAGGAAATTTCAGGGGCATGTATTTGTAACAGAAATCATATTGGGAAA
GCATCAGCATTCAATGTCTCTATCAGAAATAGGTTACAAGACTCTTCAAA
GTCGACTTGGAATACAACTCTTTTAAATAGGTCATTTATAGAAAGGCTTT
GATTAAGCAtatctttctttctttgattTGAAAACGAAAATTGCGCTCAA
ACGTCCAGCACCCTTTTGTCAACACCGACTACTTTCCAATCCAACCTCTG
GGATGCTCGACA back to topCoding sequence (CDS) from alignment at CM002462.1:19967..21978+ >rna3778 ID=rna3778|Name=rna3778|organism=Nannochloropsis gaditana|type=CDS|length=2544bp|location=Sequence derived from alignment at CM002462.1:19967..21978+ (Nannochloropsis gaditana)
ATGCTATCAAAGGAtcaaaaggaaaaagctCTGTCAGAGAATCTGTacca
aagaagaggagagggtgggagtgcagatgtggaggagaaagaggggactG
AGGAACCACAGAGTGTTTCCCCTTcgatctccctcctgtcctcttTGCAC
TCAAGTGTGCGGAGCATCGTCGGACAGATTGGTAACCACTTGTATCAGAT
GCCTAAGTGGAAGTATCGCTTGATGGTATCTTCTATTGTAGTCCtgctca
tctccttcctgctcctcctcttcgtttCAGTCGTCTACGGTTTCGGTATG
AGCCTACCGCACATTGAGGTAGTGGCGGTAGATGTggtcttgcccctccc
tccagacgGCTCGCTCCCTGTCCGCTCTCTCATGCGCGTCAACAACCCCA
ACCGCTTTTCAATTTTGGTGCATCCCACAGACATTAGTGTTTACTCCCAC
CCAACCCGCTCCCCCGGGTCTTTGCTGGGCGTTTCGACCATTCCAGAGCA
TCTTCTGCACGCCCGCGAGGGCGCCCACACTACGGAGTCTGTCTTTGTCG
TGCGCGACCTGGGCTCGATTGAGGTGTGTCAAGTCCGAccattttctttt
caaaacTTTTTGATGCGTGTGTCCTCTTTTTATTGAATGCTATCAAAGGA
tcaaaaggaaaaagctCTGTCAGAGAATCTGTaccaaagaagaggagagg
gtgggagtgcagatgtggaggagaaagaggggactGAGGAACCACAGAGT
GTTTCCCCTTcgatctccctcctgtcctcttTGCACTCAAGTGTGCGGAG
CATCGTCGGACAGATTGGTAACCACTTGTATCAGATGCCTAAGTGGAAGT
ATCGCTTGATGGTATCTTCTATTGTAGTCCtgctcatctccttcctgctc
ctcctcttcgtttCAGTCGTCTACGGTTTCGGTATGAGCCTACCGCACAT
TGAGGTAGTGGCGGTAGATGTggtcttgcccctccctccagacgGCTCGC
TCCCTGTCCGCTCTCTCATGCGCGTCAACAACCCCAACCGCTTTTCAATT
TTGGTGCATCCCACAGACATTAGTGTTTACTCCCACCCAACCCGCTCCCC
CGGGTCTTTGCTGGGCGTTTCGACCATTCCAGAGCATCTTCTGCACGCCC
GCGAGGGCGCCCACACTACGGAGTCTGTCTTTGTCGTGCGCGACCTGGGC
TCGATTGAGGTGTGTCAAGTCCGAccattttcttttcaaaacTTTTTGAT
GCGTGTGTCCTCTTTTTATTGAATGCTATCAAAGGAtcaaaaggaaaaag
ctCTGTCAGAGAATCTGTaccaaagaagaggagagggtgggagtgcagat
gtggaggagaaagaggggactGAGGAACCACAGAGTGTTTCCCCTTcgat
ctccctcctgtcctcttTGCACTCAAGTGTGCGGAGCATCGTCGGACAGA
TTGGTAACCACTTGTATCAGATGCCTAAGTGGAAGTATCGCTTGATGGTA
TCTTCTATTGTAGTCCtgctcatctccttcctgctcctcctcttcgtttC
AGTCGTCTACGGTTTCGGTATGAGCCTACCGCACATTGAGGTAGTGGCGG
TAGATGTggtcttgcccctccctccagacgGCTCGCTCCCTGTCCGCTCT
CTCATGCGCGTCAACAACCCCAACCGCTTTTCAATTTTGGTGCATCCCAC
AGACATTAGTGTTTACTCCCACCCAACCCGCTCCCCCGGGTCTTTGCTGG
GCGTTTCGACCATTCCAGAGCATCTTCTGCACGCCCGCGAGGGCGCCCAC
ACTACGGAGTCTGTCTTTGTCGTGCGCGACCTGGGCTCGATTGAGGTGTG
TCAAGTCCGAccattttcttttcaaaacTTTTTGATGCGTGTGTCCTCTT
TTTATTGAATGCTATCAAAGGAtcaaaaggaaaaagctCTGTCAGAGAAT
CTGTaccaaagaagaggagagggtgggagtgcagatgtggaggagaaaga
ggggactGAGGAACCACAGAGTGTTTCCCCTTcgatctccctcctgtcct
cttTGCACTCAAGTGTGCGGAGCATCGTCGGACAGATTGGTAACCACTTG
TATCAGATGCCTAAGTGGAAGTATCGCTTGATGGTATCTTCTATTGTAGT
CCtgctcatctccttcctgctcctcctcttcgtttCAGTCGTCTACGGTT
TCGGTATGAGCCTACCGCACATTGAGGTAGTGGCGGTAGATGTggtcttg
cccctccctccagacgGCTCGCTCCCTGTCCGCTCTCTCATGCGCGTCAA
CAACCCCAACCGCTTTTCAATTTTGGTGCATCCCACAGACATTAGTGTTT
ACTCCCACCCAACCCGCTCCCCCGGGTCTTTGCTGGGCGTTTCGACCATT
CCAGAGCATCTTCTGCACGCCCGCGAGGGCGCCCACACTACGGAGTCTGT
CTTTGTCGTGCGCGACCTGGGCTCGATTGAGGTGTGTCAAGTCCGAccat
tttcttttcaaaacTTTTTGATGCGTGTGTCCTCTTTTTATTGA back to top
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